View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0583_low_201 (Length: 212)
Name: NF0583_low_201
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_201 |
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Alignment Details
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6191358 - 6191311
Alignment:
| Q |
1 |
aattttgatgagaccaagcaatcagaaggaaaaccaaatatacaagga |
48 |
Q |
| |
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| T |
6191358 |
aattttgatgagaccaagcaatcagaaggaaaaccaaatatacaagga |
6191311 |
T |
|
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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 37454249 - 37454305
Alignment:
| Q |
6 |
tgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgt |
62 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
37454249 |
tgatgagaccaagcaatcaaaaggaaaagcaaatatacaaggaggacaagttattgt |
37454305 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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