View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_203 (Length: 206)

Name: NF0583_low_203
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_203
NF0583_low_203
[»] chr5 (1 HSPs)
chr5 (1-126)||(32396313-32396438)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 32396438 - 32396313
Alignment:
1 aaagtaaggcttggaggcaaaacaaattttgccatacaacaatcaaatacatgtaaaattatatttgtagaaagtaaaatcaatttgtaaaaccaagcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32396438 aaagtaaggcttggaggcaaaacaaattttgccatacaacaatcaaatacatgtaaaattatatttgtagaaagtaaaatcaatttgtaaaaccaagcac 32396339  T
101 acccctatttttccccctttgcttct 126  Q
    ||||||||||| ||| ||||| ||||    
32396338 acccctattttcccctctttgtttct 32396313  T

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