View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_205 (Length: 203)

Name: NF0583_low_205
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_205
NF0583_low_205
[»] chr1 (5 HSPs)
chr1 (145-203)||(1950903-1950961)
chr1 (148-203)||(37641466-37641521)
chr1 (36-82)||(1951023-1951069)
chr1 (161-203)||(49715985-49716027)
chr1 (161-203)||(49719468-49719510)
[»] chr3 (8 HSPs)
chr3 (145-203)||(10884559-10884617)
chr3 (145-203)||(10107033-10107091)
chr3 (36-82)||(10884451-10884497)
chr3 (35-82)||(10107154-10107201)
chr3 (147-203)||(2280078-2280134)
chr3 (147-201)||(17532071-17532125)
chr3 (161-203)||(30158501-30158543)
chr3 (162-203)||(44508425-44508466)
[»] chr2 (6 HSPs)
chr2 (154-203)||(38005632-38005681)
chr2 (161-203)||(29435365-29435407)
chr2 (161-203)||(15704433-15704475)
chr2 (161-203)||(15719687-15719729)
chr2 (154-203)||(4577459-4577508)
chr2 (158-203)||(10600575-10600620)
[»] chr8 (9 HSPs)
chr8 (148-203)||(5963855-5963910)
chr8 (154-203)||(45155719-45155768)
chr8 (147-203)||(18721730-18721786)
chr8 (161-203)||(18696389-18696431)
chr8 (161-203)||(25591922-25591964)
chr8 (159-200)||(14421370-14421411)
chr8 (154-203)||(31984603-31984652)
chr8 (147-203)||(25595106-25595162)
chr8 (161-200)||(23613169-23613208)
[»] chr7 (4 HSPs)
chr7 (148-203)||(11825820-11825875)
chr7 (154-203)||(8276614-8276663)
chr7 (158-203)||(10431933-10431978)
chr7 (148-203)||(8397458-8397512)
[»] chr6 (5 HSPs)
chr6 (158-203)||(5738533-5738578)
chr6 (161-203)||(11410379-11410421)
chr6 (154-203)||(1126178-1126227)
chr6 (147-203)||(23388548-23388604)
chr6 (154-203)||(31262386-31262437)
[»] chr5 (14 HSPs)
chr5 (154-203)||(21333130-21333179)
chr5 (154-203)||(21336146-21336195)
chr5 (158-203)||(22937386-22937431)
chr5 (157-203)||(2452949-2452995)
chr5 (157-203)||(28441583-28441629)
chr5 (154-195)||(40916188-40916229)
chr5 (148-203)||(26547692-26547747)
chr5 (148-203)||(26551251-26551306)
chr5 (154-193)||(43491372-43491411)
chr5 (162-203)||(3194814-3194855)
chr5 (162-203)||(34653215-34653256)
chr5 (156-203)||(14376258-14376305)
chr5 (154-203)||(32837645-32837694)
chr5 (154-186)||(40800244-40800276)
[»] chr4 (11 HSPs)
chr4 (159-203)||(40617143-40617187)
chr4 (154-203)||(19864935-19864984)
chr4 (159-203)||(5681058-5681102)
chr4 (159-203)||(27013892-27013936)
chr4 (147-203)||(37103664-37103720)
chr4 (154-203)||(19859971-19860020)
chr4 (157-203)||(5672507-5672554)
chr4 (157-203)||(10385575-10385621)
chr4 (166-203)||(5670198-5670235)
chr4 (158-203)||(12237900-12237945)
chr4 (147-203)||(11703047-11703103)
[»] scaffold0381 (1 HSPs)
scaffold0381 (158-203)||(5848-5893)
[»] scaffold0360 (2 HSPs)
scaffold0360 (158-203)||(2092-2137)
scaffold0360 (158-200)||(5922-5963)
[»] scaffold0214 (3 HSPs)
scaffold0214 (154-203)||(13215-13264)
scaffold0214 (154-203)||(19665-19714)
scaffold0214 (154-203)||(27231-27280)
[»] scaffold0062 (2 HSPs)
scaffold0062 (161-203)||(53345-53387)
scaffold0062 (161-203)||(68244-68286)
[»] scaffold0035 (1 HSPs)
scaffold0035 (158-203)||(62145-62190)
[»] scaffold0014 (1 HSPs)
scaffold0014 (154-203)||(226961-227010)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 1950961 - 1950903
Alignment:
Q  145 ttaggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1950961 ttaggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 1950903  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 37641466 - 37641521
Alignment:
Q  148 ggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  37641466 ggagcaaagccggcaacgacagaactctatcggtttattttctttattatgttgtt 37641521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 1951069 - 1951023
Alignment:
Q  36 agagaagccacgttttcgaagaaaggaattaggcattcacgcagcac 82  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  1951069 agagaagccatgttttggaagaaaggaattaggcattcacgcagcac 1951023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 49715985 - 49716027
Alignment:
Q  161 caacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  49715985 caacgacggaactctatcggtttattttctttactatgttgtt 49716027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 49719468 - 49719510
Alignment:
Q  161 caacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  49719468 caacgacggaactctatcggtttattttctttactatgttgtt 49719510  T

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Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 10884559 - 10884617
Alignment:
Q  145 ttaggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10884559 ttaggagctaagccggcaacgacggaactttattggtttattttctttactatgttgtt 10884617  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 10107091 - 10107033
Alignment:
Q  145 ttaggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  10107091 ttagaagctaagccggcaacgacggaatcctattggtttattttctttactatgttgtt 10107033  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 10884451 - 10884497
Alignment:
Q  36 agagaagccacgttttcgaagaaaggaattaggcattcacgcagcac 82  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  10884451 agagaagccacgttttggaagaaaggaattaggcattcacgcagcac 10884497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 10107201 - 10107154
Alignment:
Q  35 cagagaagccacgttttcgaagaaaggaattaggcattcacgcagcac 82  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  10107201 cagagaagccacgttttggaagagaggaattaggcattcacgcagcac 10107154  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 2280134 - 2280078
Alignment:
Q  147 aggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||| | |||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  2280134 aggagcaacgccggcaacgacggaattctatcggtttattttctttacaatgttgtt 2280078  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 17532125 - 17532071
Alignment:
Q  147 aggagctaagccggcaacgacggaactctattggtttattttctttactatgttg 201  Q
    |||||| | |||| ||||||||||||||| | | |||||||||||||||||||||    
T  17532125 aggagcaatgccgacaacgacggaactctttcgctttattttctttactatgttg 17532071  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 30158543 - 30158501
Alignment:
Q  161 caacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||| |||||||||| ||||||||||||||| |||||||||    
T  30158543 caacgatggaactctatcggtttattttctttattatgttgtt 30158501  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 44508425 - 44508466
Alignment:
Q  162 aacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||| ||||| | |||||||||||||||||||||||    
T  44508425 aacgacggaattctatcgatttattttctttactatgttgtt 44508466  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 38005681 - 38005632
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38005681 aagccggcaacgacggaactctatcggtttattttctttactatgttgtt 38005632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 29435365 - 29435407
Alignment:
Q  161 caacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  29435365 caacgacggaactctatcggtttattttctttactatgttgtt 29435407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 15704475 - 15704433
Alignment:
Q  161 caacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  15704475 caacgacgaaactctatcggtttattttctttactatgttgtt 15704433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 15719729 - 15719687
Alignment:
Q  161 caacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  15719729 caacgacgaaactctatcggtttattttctttactatgttgtt 15719687  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 4577459 - 4577508
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||| | |||||| | |||||||||||||||||||||||    
T  4577459 aagccggcaacgacgaagctctatcgatttattttctttactatgttgtt 4577508  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 10600575 - 10600620
Alignment:
Q  158 cggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||    
T  10600575 cggcaacgacggaactttatcggtttattttctttactatattgtt 10600620  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 5963855 - 5963910
Alignment:
Q  148 ggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  5963855 ggagcaaagccggcaacgacggaactctatcggtttattttctttattatgttgtt 5963910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 45155768 - 45155719
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  45155768 aagccggcaacgacggaactctatatgtttattttctttactatgttgtt 45155719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 18721786 - 18721730
Alignment:
Q  147 aggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||| | |||| |||||||| |||||||| |||||||||||||||||||||||||    
T  18721786 aggagcaacgccgacaacgacgaaactctatcggtttattttctttactatgttgtt 18721730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 18696431 - 18696389
Alignment:
Q  161 caacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  18696431 caacgacgaaactctatcggtttattttctttactatgttgtt 18696389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 25591964 - 25591922
Alignment:
Q  161 caacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  25591964 caacgacgaaactctatcggtttattttctttactatgttgtt 25591922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 14421370 - 14421411
Alignment:
Q  159 ggcaacgacggaactctattggtttattttctttactatgtt 200  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  14421370 ggcaacgacggaattctatcggtttattttctttactatgtt 14421411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 31984603 - 31984652
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||| |||||||| | |||||| |||||||||||||||||||||||||    
T  31984603 aagccgacaacgacgaagctctatcggtttattttctttactatgttgtt 31984652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 25595162 - 25595106
Alignment:
Q  147 aggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||| | |||| |||||||| |||||||| |||||||||| ||||||||||||||    
T  25595162 aggagcaacgccgacaacgacgaaactctatcggtttattttttttactatgttgtt 25595106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 23613169 - 23613208
Alignment:
Q  161 caacgacggaactctattggtttattttctttactatgtt 200  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  23613169 caacgacgaaactctatcggtttattttctttactatgtt 23613208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 11825875 - 11825820
Alignment:
Q  148 ggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  11825875 ggagcaaagccggcaacgacggaactctatcggtttattttctttattatgttgtt 11825820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 8276614 - 8276663
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  8276614 aagccggcaacgacggaactctatcagtttattttctttattatgttgtt 8276663  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 10431933 - 10431978
Alignment:
Q  158 cggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  10431933 cggcaacgacggaactctaatggtttattttctttactaggttgtt 10431978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 8397458 - 8397512
Alignment:
Q  148 ggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  8397458 ggagcaaagccggcaacgacggaactcta-cggtttattttctttattatgttgtt 8397512  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 5738578 - 5738533
Alignment:
Q  158 cggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  5738578 cggcaacgacggaactctatcggtttattttctttactatgttgtt 5738533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 11410379 - 11410421
Alignment:
Q  161 caacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  11410379 caacgacggaactctatcggtttattttctttactatgttgtt 11410421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 1126227 - 1126178
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||||||    
T  1126227 aagccggcaacgacggaactctatcggtttattgtttttactatgttgtt 1126178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 23388604 - 23388548
Alignment:
Q  147 aggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||| | |||| |||||||| |||||||| |||||||||||||||||||||||||    
T  23388604 aggagcaacgccgacaacgacgaaactctatcggtttattttctttactatgttgtt 23388548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 31262386 - 31262437
Alignment:
Q  154 aagccggcaacgacggaactctattggtt--tattttctttactatgttgtt 203  Q
    ||||||||||||| |||||||||||||||  |||||||| ||||||||||||    
T  31262386 aagccggcaacgatggaactctattggtttatattttctctactatgttgtt 31262437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 21333179 - 21333130
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  21333179 aagccggcagcgacggaactctatcggtttattttctttactatgttgtt 21333130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 21336195 - 21336146
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  21336195 aagccggcagcgacggaactctatcggtttattttctttactatgttgtt 21336146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 22937431 - 22937386
Alignment:
Q  158 cggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  22937431 cggcaacgacggaactctatcggtttattttctttactatgttgtt 22937386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 2452949 - 2452995
Alignment:
Q  157 ccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||    
T  2452949 ccggcaacgacggaactctatggatttattttctttactatgttgtt 2452995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 28441629 - 28441583
Alignment:
Q  157 ccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  28441629 ccggcaacgacggaactctatcggtttattttctttactacgttgtt 28441583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 40916229 - 40916188
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttact 195  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  40916229 aagccgacaacgacggaactctattggtttattttctttact 40916188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 26547692 - 26547747
Alignment:
Q  148 ggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||| |||||||||||||||||||||||| |||||||| | |||| |||||||||    
T  26547692 ggagcaaagccggcaacgacggaactctatcggtttattgtttttattatgttgtt 26547747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 26551251 - 26551306
Alignment:
Q  148 ggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||| |||||||||||||||||||||||| |||||||| | |||| |||||||||    
T  26551251 ggagcaaagccggcaacgacggaactctatcggtttattgtttttattatgttgtt 26551306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 43491372 - 43491411
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttcttta 193  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  43491372 aagccggcaacgacggaactctatcggtttattttcttta 43491411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 3194814 - 3194855
Alignment:
Q  162 aacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  3194814 aacgacggaattctatcggtttattttctttactatgttgtt 3194855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 34653256 - 34653215
Alignment:
Q  162 aacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  34653256 aacgacggaattctatcggtttattttctttactatgttgtt 34653215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 14376305 - 14376258
Alignment:
Q  156 gccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||| |||||  ||||| |||||||||||||||||||||||||    
T  14376305 gccggcaacaacggatttctatcggtttattttctttactatgttgtt 14376258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 32837645 - 32837694
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||| |||||| |||   |||||||||||||||||||||||||    
T  32837645 aagccggcaactacggaattctgacggtttattttctttactatgttgtt 32837694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 40800276 - 40800244
Alignment:
Q  154 aagccggcaacgacggaactctattggtttatt 186  Q
    |||||||||||||||||||||||| ||||||||    
T  40800276 aagccggcaacgacggaactctatcggtttatt 40800244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 40617187 - 40617143
Alignment:
Q  159 ggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  40617187 ggcaacgacggaactctatcggtttattttctttactatgttgtt 40617143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 19864984 - 19864935
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| |||||    
T  19864984 aagccagcaacgacggaactctatcggtttattttctttactatcttgtt 19864935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 5681058 - 5681102
Alignment:
Q  159 ggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||    
T  5681058 ggcaacgacggaactctatcggtttattttctttactatattgtt 5681102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 27013892 - 27013936
Alignment:
Q  159 ggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||||| | |||||||||||||||||||||||    
T  27013892 ggcaacgacggaactctatcgatttattttctttactatgttgtt 27013936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 37103720 - 37103664
Alignment:
Q  147 aggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||| |||||||||||| || |||||||| ||||||||||||||| |||||||||    
T  37103720 aggagcaaagccggcaacggcgaaactctatcggtttattttctttattatgttgtt 37103664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 19860020 - 19859971
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||||||||  || ||||||||||||||||||| |||||    
T  19860020 aagccggcaacgacggaacttcatcggtttattttctttactatattgtt 19859971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 5672507 - 5672554
Alignment:
Q  157 ccggcaacga-cggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  5672507 ccggcaacgaacggaactctatcggtttattttctttgctatgttgtt 5672554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 10385575 - 10385621
Alignment:
Q  157 ccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||||||||||||||   |||||||| ||||||||||||||    
T  10385575 ccggcaacgacggaactctatgaatttattttttttactatgttgtt 10385621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 5670198 - 5670235
Alignment:
Q  166 acggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  5670198 acggaactctatcggtttattttctttgctatgttgtt 5670235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 12237900 - 12237945
Alignment:
Q  158 cggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||||||| | ||| ||||||||||||||| |||||||||    
T  12237900 cggcaacgacggaattttatcggtttattttctttattatgttgtt 12237945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 11703103 - 11703047
Alignment:
Q  147 aggagctaagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||| | |||| || ||||| || ||||| |||||||||||||||||||||||||    
T  11703103 aggagcaacgccgacatcgacgaaattctatcggtttattttctttactatgttgtt 11703047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 5893 - 5848
Alignment:
Q  158 cggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||||||||||||| | |||||||||||||||||||||||    
T  5893 cggcaacgacggaactctatcgatttattttctttactatgttgtt 5848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 2092 - 2137
Alignment:
Q  158 cggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||    
T  2092 cggcaacgacggaactctatcggtttattttctttattatgttgtt 2137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 5922 - 5963
Alignment:
Q  158 cggcaacgacggaactctattggtttattttctttactatgtt 200  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  5922 cggcaacgacggaactctatcggtttatttt-tttactatgtt 5963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 13215 - 13264
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  13215 aagccggcaacgacgaagctctatcggtttattttctttactatgttgtt 13264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 19665 - 19714
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  19665 aagccggcaacgacgaagctctatcggtttattttctttactatgttgtt 19714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 27231 - 27280
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    ||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  27231 aagccggcaacgacgaagctctatcggtttattttctttactatgttgtt 27280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 53387 - 53345
Alignment:
Q  161 caacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  53387 caacgacgaaactctatcggtttattttctttactatgttgtt 53345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 68286 - 68244
Alignment:
Q  161 caacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  68286 caacgacgaaactctatcggtttattttctttactatgttgtt 68244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 62145 - 62190
Alignment:
Q  158 cggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||||||||||||||||| || ||||||||||||| ||||||||    
T  62145 cggcaacgacggaactctatcgggttattttctttaccatgttgtt 62190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 226961 - 227010
Alignment:
Q  154 aagccggcaacgacggaactctattggtttattttctttactatgttgtt 203  Q
    |||||| |||||||| | |||||| |||||||||||||||||||||||||    
T  226961 aagccgacaacgacgaagctctatcggtttattttctttactatgttgtt 227010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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