View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_21 (Length: 565)
Name: NF0583_low_21
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 94 - 308
Target Start/End: Original strand, 28758998 - 28759213
Alignment:
| Q |
94 |
caataacaaggatgaa-ttatatatacgtaatcagaacagaaccaatcaataacaagaccataattcaaaaattcattatggaaattcttaccagaagaa |
192 |
Q |
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| T |
28758998 |
caataacaaggatgaaattatatatacgtaatcagaacagaaccaatcaataacaagaccataattcaaaaattcgttatggaaattcttaccagaagaa |
28759097 |
T |
|
| Q |
193 |
aactcactagggaggttcttgatggcattcaaaagcacattgcttgaaccttcaatttccttgcagccaggtgaataacaaggaaccaaaacagcaaaac |
292 |
Q |
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|| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28759098 |
aattcattagggaggttcttaatggcattcaaaagcacattgcttgagccttcaatctccttgcagccaggtgaataacaaggaaccaaaacagcaaaac |
28759197 |
T |
|
| Q |
293 |
tatcaccaccagaatc |
308 |
Q |
| |
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|||||||||||||||| |
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| T |
28759198 |
tatcaccaccagaatc |
28759213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 332 - 491
Target Start/End: Original strand, 28759234 - 28759393
Alignment:
| Q |
332 |
tgctttcaaaatcagaaccaagaggctccaaccacccaatagaccaatcagaatcatcagattcagaaccagacagaaaacaccaatcaccaccatcaga |
431 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28759234 |
tgctttcaaaatcagaaccaagaggctccagccacccaatagaccaatcagagtcatcagattcagaaccagacagaaaacaccaatcaccaccatcaga |
28759333 |
T |
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| Q |
432 |
tggcacaaacacaacatcatactctctatcaattgttctctcttcctttttctcctctct |
491 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28759334 |
tggaacaaacacaacatcatactctctatcaattgttctctcttcctttttctcctctct |
28759393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 339 - 477
Target Start/End: Original strand, 13756613 - 13756748
Alignment:
| Q |
339 |
aaaatcagaaccaagaggctccaaccacccaatagaccaatcagaatcatcagattcagaaccagacagaaaacaccaatcaccaccatcagatggcaca |
438 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||||| || || ||||| | | ||||||||||||||| || |
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| T |
13756613 |
aaaatcagaaccatgaggctctaaccacccaatagaccaatctgagtcatcagattcagagcctga---taaacaaccaccaccaccatcagatgatact |
13756709 |
T |
|
| Q |
439 |
aacacaacatcatactctctatcaattgttctctcttcc |
477 |
Q |
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|| |||||||||||||||||||||| | | ||||||||| |
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| T |
13756710 |
aaaacaacatcatactctctatcaactctcctctcttcc |
13756748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 27969589 - 27969538
Alignment:
| Q |
353 |
gaggctccaaccacccaatagaccaatcagaatcatcagattcagaaccaga |
404 |
Q |
| |
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|||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
27969589 |
gaggttccaaccatccaattgaccaatcagaatcatcagattcagaaccaga |
27969538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 13756522 - 13756580
Alignment:
| Q |
236 |
ttgaaccttcaatttccttgcagccaggtgaataacaaggaaccaaaacagcaaaacta |
294 |
Q |
| |
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|||| ||||||| ||||||||| || ||| |||||||||||||||||||||||||||| |
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|
| T |
13756522 |
ttgagccttcaacttccttgcaacctggtctataacaaggaaccaaaacagcaaaacta |
13756580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 46047065 - 46047109
Alignment:
| Q |
353 |
gaggctccaaccacccaatagaccaatcagaatcatcagattcag |
397 |
Q |
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| T |
46047065 |
gaggctccaaccagccaatagaccaatcagaagcaacagattcag |
46047109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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