View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0583_low_22 (Length: 564)
Name: NF0583_low_22
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 14 - 535
Target Start/End: Original strand, 32914741 - 32915262
Alignment:
| Q |
14 |
cagacacgacacaaataatttaacacggaaaatannnnnnnnaaaatgacattattaaaaaactgacatgatttattggaatcatgtattggtgtcagat |
113 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
32914741 |
cagacacgacacaaataatttgacacagaaaataatttttaaaaaatgacattattaaaaaactgacatgatttattggaatcatgtgttggtgtcggat |
32914840 |
T |
|
| Q |
114 |
atgttacatatctgacatctaaacacgcctaatccgaggattacatacatgtgcttcatagatcgctagagaccataaaccacatgtgacacttttccac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
32914841 |
atgttacatatctgacatctaaacacgcctgatccgaagattagatacatgtgcttcatagatcgctagagacaataaaccacatgtaacacttttccac |
32914940 |
T |
|
| Q |
214 |
tagcaacacaatggttagttatctcatcattatcataatgacgcgagatagtggtttccaattgtataacaacatcaaaatctgaaagcagacacagcaa |
313 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32914941 |
tagcaacacaatggctagttatctaatcattatcataatgacgcgagatagtggtttccaattgtataacaacatcaaaatctgaaagcagacacagcaa |
32915040 |
T |
|
| Q |
314 |
agtgttcattccgtcctaaacaaacaaaggaacaaaggaataaaacaaacaataataatttatacaaccacctttgtcatgttcttcggttcttttcttg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
32915041 |
agtgttcattccgtcctaaacaaacaaacaaacaaaggaacaaaacaaacaataataatttatacaaccacctttgtcatgttcttctgttcttttcctg |
32915140 |
T |
|
| Q |
414 |
ctgttagttagtatatcaccaccaccatccttccttctcttgctttgtagctcttcacaaagtacacaggttttttacatacatttgtgattttgacttt |
513 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32915141 |
ctgttaattagtatatcaccaccaccacccttccttctcttgctttgtagctcttcacaaagtacacaggttttttacatacatttgtgattttgacttt |
32915240 |
T |
|
| Q |
514 |
ttcctttacttcatggggaatc |
535 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
32915241 |
ttcctttacttcatggggaatc |
32915262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 17155541 - 17155597
Alignment:
| Q |
97 |
atgtattggtgtcagatatgttacatatctgacatctaaacacgcctaatccgagga |
153 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||||| |||||| ||||| |||||| |
|
|
| T |
17155541 |
atgtatcggtgtcagatatgatacatatccgacatcaaaacacatctaatacgagga |
17155597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 768 times since January 2019
Visitors: 3837