View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_26 (Length: 560)
Name: NF0583_low_26
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 193 - 548
Target Start/End: Complemental strand, 27221971 - 27221624
Alignment:
| Q |
193 |
gtaagatgggctccttctgttactctctcctctttaaagattcgtggaccttgagctgaagcatggtctaatattctggttggtgtgctataatatgctt |
292 |
Q |
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| T |
27221971 |
gtaagatgggctccttctgttactctctcctctttaaagattcgtggaccttgagctgaagcatggtctaatattctggttggtgtgctataatatgctt |
27221872 |
T |
|
| Q |
293 |
aaatatttcaacaagcatattatactcatgctctatttcatgttgcgtaaacttgtagcgtaatgttcctccctcctaatggtaaatgaataaattcaat |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27221871 |
gaatatttcaacaagcatattatactcatgctctatttcatgttgcgtaaacttgtagcgtaatgttcctccctcctaatggtaaatgaataaattcaat |
27221772 |
T |
|
| Q |
393 |
agcatgtacataatacacaaagataacaatacatgggcaatggtattactactatttaaactaaaatagttgaacatacacaattgtatattcaaagcat |
492 |
Q |
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| T |
27221771 |
agcatgtacataatacacaaagataacaatacatgggcaatggtat------tatttaaactgaaatagttgaacatacaaaattg--tattcaaaacgt |
27221680 |
T |
|
| Q |
493 |
aagcgatcaaactttttcttcagtccagcgacgccaaaatttactcctgtgatatt |
548 |
Q |
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| T |
27221679 |
aagcgatcaaactttttcttcagtccagcgacgccaaaatttactcctgtgatatt |
27221624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 27222111 - 27221971
Alignment:
| Q |
1 |
atcaacttctgatttatacctgtcagccttaacttttgatgcttctatctttccaatttctcaattctagaatattttgcatccttatattggtactcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27222111 |
atcaacttctgatttatacctgtcagccttaacttttgatgcttctatctttccaatttctcaattctagaatattttgcatccttatattggtactcac |
27222012 |
T |
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| Q |
101 |
ttgaagactatgcatttttcctct-ttttgtcatattcttg |
140 |
Q |
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||||||||| |||||||||||||| |||||||||||||||| |
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| T |
27222011 |
ttgaagactctgcatttttcctcttttttgtcatattcttg |
27221971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27226977 - 27226943
Alignment:
| Q |
1 |
atcaacttctgatttatacctgtcagccttaactt |
35 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
27226977 |
atcagcttctgatttatacctgtcagccttaactt |
27226943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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