View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_28 (Length: 508)

Name: NF0583_low_28
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_28
NF0583_low_28
[»] chr2 (6 HSPs)
chr2 (1-193)||(34847592-34847784)
chr2 (264-493)||(34847295-34847521)
chr2 (403-469)||(752123-752189)
chr2 (329-385)||(752201-752258)
chr2 (422-462)||(17910905-17910945)
chr2 (418-470)||(39792079-39792131)
[»] chr1 (6 HSPs)
chr1 (403-454)||(34620606-34620657)
chr1 (418-454)||(7445003-7445039)
chr1 (418-469)||(36995204-36995255)
chr1 (348-385)||(34620669-34620706)
chr1 (351-384)||(34766064-34766097)
chr1 (422-466)||(41885563-41885607)
[»] chr4 (2 HSPs)
chr4 (418-454)||(53234307-53234343)
chr4 (418-452)||(26009668-26009702)
[»] chr8 (6 HSPs)
chr8 (443-474)||(41235939-41235970)
chr8 (352-382)||(8871210-8871240)
chr8 (419-452)||(14955209-14955242)
chr8 (421-470)||(32202993-32203042)
chr8 (418-454)||(37953237-37953273)
chr8 (418-454)||(41570126-41570162)
[»] chr5 (1 HSPs)
chr5 (418-469)||(41384823-41384873)
[»] chr7 (3 HSPs)
chr7 (436-469)||(16082554-16082587)
chr7 (418-455)||(29559227-29559264)
chr7 (438-474)||(26980708-26980744)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 34847784 - 34847592
Alignment:
Q  1 tatcaaccttttgtgaacaagttatcagcagaaactgtctttaatttgtctccaaaaacatacagatgggggaatccatgtgctaccaatctaagacagc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34847784 tatcaaccttttgtgaacaagttatctgcagaaactgtctttaatttgtctccaaaaacatacagatgggggaatccatgtgctaccaatctaagacagc 34847685  T
Q  101 tttcttggtctgaagcctttcatttttctctgacagatataccaaatatggaccagcacataactttgaggttggttttcttcacatcaatta 193  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34847684 tttcttggtctgaagcctttcattttgctctgacagatataccaaatatggaccagcatataactttgaggttggttttcttcacatcaatta 34847592  T

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Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 264 - 493
Target Start/End: Complemental strand, 34847521 - 34847295
Alignment:
Q  264 aaactttagcacatttacttattagaaaatactaacaagtactcttaggacatttgatgagaaacctaaaaaagaaattatgtctgggattgatacattc 363  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||||| |||| || |||||||| ||||    
T  34847521 aaactttagcacatttacttattagaaaatgctaacaagtgctcttaggatatttgatgagaagcctaaaaaagaaataatgtatgagattgatatattc 34847422  T
Q  364 aacacattgaaacttaaaaaagnnnnnnnnnnnnnnnnnacataaaactaactgattatttctattttagaatccttaacaagtgccctaatgacacttg 463  Q
    ||||||||||||| | ||||||                 |||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||    
T  34847421 aacacattgaaacctgaaaaag---tattttttttttttacataaaacttattgattatttctattttagaatctttaacaagtgccctaatgacacttg 34847325  T
Q  464 ttagcatttccattacttatatactacccc 493  Q
    ||||||||||| ||||||||||||||||||    
T  34847324 ttagcatttccgttacttatatactacccc 34847295  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 752189 - 752123
Alignment:
Q  403 acataaaactaactgattatttctattttagaatccttaacaagtgccctaatgacacttgttagca 469  Q
    |||||||||||||  ||||||||||||||||||| ||||||||||||||||| |  |||||||||||    
T  752189 acataaaactaaccaattatttctattttagaattcttaacaagtgccctaagggtacttgttagca 752123  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 752258 - 752201
Alignment:
Q  329 ctaaaaaagaaattatgtct-gggattgatacattcaacacattgaaacttaaaaaag 385  Q
    ||||| |||||||| ||||| ||||||||| |||||||||||||||||||| ||||||    
T  752258 ctaaagaagaaattttgtcttgggattgatgcattcaacacattgaaacttgaaaaag 752201  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 17910945 - 17910905
Alignment:
Q  422 tttctattttagaatccttaacaagtgccctaatgacactt 462  Q
    |||||||||||||||| ||||||||| | ||||||||||||    
T  17910945 tttctattttagaatctttaacaagttctctaatgacactt 17910905  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 470
Target Start/End: Original strand, 39792079 - 39792131
Alignment:
Q  418 attatttctattttagaatccttaacaagtgccctaatgacacttgttagcat 470  Q
    ||||||||| |||| |||| ||||||||||| ||||| |||| ||||||||||    
T  39792079 attatttctttttttgaattcttaacaagtgtcctaaagacatttgttagcat 39792131  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Complemental strand, 34620657 - 34620606
Alignment:
Q  403 acataaaactaactgattatttctattttagaatccttaacaagtgccctaa 454  Q
    |||||||||| ||  |||||||||||||||||||||||||||||||||||||    
T  34620657 acataaaacttaccaattatttctattttagaatccttaacaagtgccctaa 34620606  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 7445003 - 7445039
Alignment:
Q  418 attatttctattttagaatccttaacaagtgccctaa 454  Q
    |||||||||||||||||||| ||||||||||||||||    
T  7445003 attatttctattttagaatctttaacaagtgccctaa 7445039  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 36995255 - 36995204
Alignment:
Q  418 attatttctattttagaatccttaacaagtgccctaatgacacttgttagca 469  Q
    |||||||| ||||| | |||||||||||||||||||| | ||||||||||||    
T  36995255 attatttccatttttgtatccttaacaagtgccctaagggcacttgttagca 36995204  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 385
Target Start/End: Complemental strand, 34620706 - 34620669
Alignment:
Q  348 tgggattgatacattcaacacattgaaacttaaaaaag 385  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  34620706 tgggattgatgcattcaacacattgaaacttgaaaaag 34620669  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 34766097 - 34766064
Alignment:
Q  351 gattgatacattcaacacattgaaacttaaaaaa 384  Q
    |||||||| |||||||||||||||||||||||||    
T  34766097 gattgatatattcaacacattgaaacttaaaaaa 34766064  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 466
Target Start/End: Original strand, 41885563 - 41885607
Alignment:
Q  422 tttctattttagaatccttaacaagtgccctaatgacacttgtta 466  Q
    |||||||| | |||||||||||||||||||||| |||||| ||||    
T  41885563 tttctattcttgaatccttaacaagtgccctaaggacactcgtta 41885607  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 53234307 - 53234343
Alignment:
Q  418 attatttctattttagaatccttaacaagtgccctaa 454  Q
    |||||||||||||||||||||||||||||||| ||||    
T  53234307 attatttctattttagaatccttaacaagtgcgctaa 53234343  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 452
Target Start/End: Complemental strand, 26009702 - 26009668
Alignment:
Q  418 attatttctattttagaatccttaacaagtgccct 452  Q
    |||||||||||||||||||||||||||| ||||||    
T  26009702 attatttctattttagaatccttaacaaatgccct 26009668  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 474
Target Start/End: Original strand, 41235939 - 41235970
Alignment:
Q  443 caagtgccctaatgacacttgttagcatttcc 474  Q
    ||||||||||||||||||||||||||||||||    
T  41235939 caagtgccctaatgacacttgttagcatttcc 41235970  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 382
Target Start/End: Original strand, 8871210 - 8871240
Alignment:
Q  352 attgatacattcaacacattgaaacttaaaa 382  Q
    |||||||||||||||||||||||||||||||    
T  8871210 attgatacattcaacacattgaaacttaaaa 8871240  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 452
Target Start/End: Complemental strand, 14955242 - 14955209
Alignment:
Q  419 ttatttctattttagaatccttaacaagtgccct 452  Q
    ||||||||||||| ||||||||||||||||||||    
T  14955242 ttatttctatttttgaatccttaacaagtgccct 14955209  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 470
Target Start/End: Complemental strand, 32203042 - 32202993
Alignment:
Q  421 atttctattttagaatccttaacaagtgccctaatgacacttgttagcat 470  Q
    ||||||| ||| |||||||||||||||||||||| | |||||| ||||||    
T  32203042 atttctaattttgaatccttaacaagtgccctaagggcacttgctagcat 32202993  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 37953273 - 37953237
Alignment:
Q  418 attatttctattttagaatccttaacaagtgccctaa 454  Q
    |||||||||||||| |||||||||||||||| |||||    
T  37953273 attatttctatttttgaatccttaacaagtgtcctaa 37953237  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 41570126 - 41570162
Alignment:
Q  418 attatttctattttagaatccttaacaagtgccctaa 454  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  41570126 attatttctattttggaaaccttaacaagtgccctaa 41570162  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 469
Target Start/End: Original strand, 41384823 - 41384873
Alignment:
Q  418 attatttctattttagaatccttaacaagtgccctaatgacacttgttagca 469  Q
    |||||||||||||| ||||||||||||| || ||||| ||||||||||||||    
T  41384823 attatttctatttttgaatccttaacaaatgtcctaa-gacacttgttagca 41384873  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 16082554 - 16082587
Alignment:
Q  436 tccttaacaagtgccctaatgacacttgttagca 469  Q
    ||||||||||||||||| ||||||||||||||||    
T  16082554 tccttaacaagtgcccttatgacacttgttagca 16082587  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 455
Target Start/End: Original strand, 29559227 - 29559264
Alignment:
Q  418 attatttctattttagaatccttaacaagtgccctaat 455  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  29559227 attatttatatttttgaatccttaacaagtgccctaat 29559264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 26980708 - 26980744
Alignment:
Q  438 cttaacaagtgccctaatgacacttgttagcatttcc 474  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  26980708 cttaacaattgctctaatgacacttgttagcatttcc 26980744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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