View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_29 (Length: 503)
Name: NF0583_low_29
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 30 - 424
Target Start/End: Complemental strand, 2135952 - 2135563
Alignment:
| Q |
30 |
gtaagtccatcaccgcagcctccgcaggggatacacatgcttccatcagccttagacatcgccaatctgcttgctgccaaattttggagcccatatcttg |
129 |
Q |
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| T |
2135952 |
gtaagtccatcaccgcagcctccgcaggggatacacatgct-----cagccttagacatcgccaatctgcttgctgccaaattttggagcccatatcttg |
2135858 |
T |
|
| Q |
130 |
tcatacgtgcctccacatgtgtgacacctttccagtgcgtaaggtgccatgcgtcacatacccttggccattttttacgtcgctccttctagtgtgtttg |
229 |
Q |
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| T |
2135857 |
tcatacgtgcctccacatgtgtgacacctttccagtgcgtaaggcgccatgcgccacatacccttggccattttttacgtacctccttctagtgtgtttg |
2135758 |
T |
|
| Q |
230 |
ccgacatccccattttcattgatgatttcttgagatgttcttgaatgactttatgaaggatcgtaattataatcactcaacctatccttgaatgcattaa |
329 |
Q |
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| T |
2135757 |
ccgacatccccattttcattgatgatttcttgagatgttcttgaatgactttatgatggatcgtaattataatcactcaacctatccttgaatgcattaa |
2135658 |
T |
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| Q |
330 |
gtaattatacaatttctacactaacagctacctaaagaacctatccccttcccaataaagacagactcctttggattcatttagttcatattacc |
424 |
Q |
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| T |
2135657 |
gtaattatacaatttctacattaacagctacctaaagaacctatccccttcccaataaagataggctcctttggattcatttagttcatattacc |
2135563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 421
Target Start/End: Original strand, 2082796 - 2082890
Alignment:
| Q |
328 |
aagtaattatacaatttctacactaacagctacctaaagaacctatccccttccc-aataaagacagactcctttggattcatttagttcatatt |
421 |
Q |
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||||||||||| |||||||| ||| ||| |||||| ||||| ||||||||||| || ||||| || | |||||||||||||||||||||||| |
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| T |
2082796 |
aagtaattatatggtttctacattaagagcaacctaaggaacccatccccttcccaaaaaaagaaaggtttctttggattcatttagttcatatt |
2082890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 2135533 - 2135497
Alignment:
| Q |
454 |
aaacaatttaggcgcatatattattgctttgcaacag |
490 |
Q |
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| T |
2135533 |
aaacaatttaggcgcatatgttattgctttgcaacag |
2135497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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