View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_30 (Length: 501)

Name: NF0583_low_30
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_30
NF0583_low_30
[»] chr8 (7 HSPs)
chr8 (35-472)||(6290061-6290498)
chr8 (394-472)||(6353512-6353590)
chr8 (345-422)||(6275619-6275696)
chr8 (370-422)||(6322505-6322557)
chr8 (373-445)||(6425181-6425253)
chr8 (365-422)||(6333067-6333124)
chr8 (373-422)||(7460563-7460612)
[»] chr4 (1 HSPs)
chr4 (135-216)||(4734034-4734115)
[»] chr3 (1 HSPs)
chr3 (183-229)||(11021770-11021816)
[»] chr1 (1 HSPs)
chr1 (137-229)||(14932079-14932175)


Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 35 - 472
Target Start/End: Original strand, 6290061 - 6290498
Alignment:
Q  35 agagaaaaatgaagtaaaaattgtgttattctattaagtttcttacaatggagatgaactctatttataagctaatttctaacatagcatctctaacaaa 134  Q
    ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6290061 agagaaaaatgaagtaaaaattgtgttattcaattcagtttgttacaatggagatgaactctatttataagctaatttctaacatagcatctctaacaaa 6290160  T
Q  135 cttaacagctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgttcctcaagtaatcttccttcttctaccattcttaacaatcat 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  6290161 cttaacagctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgctcctcaagtaatcttccttcttcttccattcttaacaatcat 6290260  T
Q  235 aacatacactatacttttataaatatcaaggcgacattaattaagtcttattgaaatacactagggatcactttcgtttgtgaagtaataccttaaaaaa 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6290261 aacatacactatacttttataaatatcaaggcgacattaattaagtcttattgaaatacaccagggatcactttcgtttgtgaagtaataccttaaaaaa 6290360  T
Q  335 taatatacccaagtgtttaaaaagagtataaaagtttataacctttcttagctggttccctgccggttcttccccttcgagggtaagggaaattgctcga 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6290361 taatatacccaagtgtttaaaaagagtataaaagtttataacctttcttagctggttccctgccggttcttccccttcgagggtaagggaaattgctcga 6290460  T
Q  435 tcccccaagaatttgacgcgccaactgaggtttcgagt 472  Q
    |||||||||||||||||||||||| |||||||||||||    
T  6290461 tcccccaagaatttgacgcgccaattgaggtttcgagt 6290498  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 6353512 - 6353590
Alignment:
Q  394 ctgccggttcttccccttcgagggtaagggaaattgctcgatcccccaagaatttgacgcgccaactgaggtttcgagt 472  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||    
T  6353512 ctgccagttcttccccttcgagggtaagggaaatcgcttgatcccccaagaatttgacgcgccaattgaggtttcgagt 6353590  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 345 - 422
Target Start/End: Original strand, 6275619 - 6275696
Alignment:
Q  345 aagtgtttaaaaagagtataaaagtttataacctttcttagctggttccctgccggttcttccccttcgagggtaagg 422  Q
    ||||||||||| | | ||||||||  ||||||||||||||||||||| |||||||||||| || ||||||||||||||    
T  6275619 aagtgtttaaataaaatataaaagcatataacctttcttagctggtttcctgccggttctccctcttcgagggtaagg 6275696  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 6322505 - 6322557
Alignment:
Q  370 ttataacctttcttagctggttccctgccggttcttccccttcgagggtaagg 422  Q
    ||||||||||| |||||||||| |||||||||||| |||||||||||||||||    
T  6322505 ttataaccttttttagctggtttcctgccggttctgccccttcgagggtaagg 6322557  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 445
Target Start/End: Original strand, 6425181 - 6425253
Alignment:
Q  373 taacctttcttagctggttccctgccggttcttccccttcgagggtaagggaaattgctcgatcccccaagaa 445  Q
    |||||||| ||||||||||  ||||| ||||| ||||||||||||||||| ||  |||||||||| |||||||    
T  6425181 taaccttttttagctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaa 6425253  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 6333067 - 6333124
Alignment:
Q  365 aaagtttataacctttcttagctggttccctgccggttcttccccttcgagggtaagg 422  Q
    ||||||||| |||||| |||||  ||| |||||||||||| |||||||||||||||||    
T  6333067 aaagtttatcaccttttttagcatgtttcctgccggttctcccccttcgagggtaagg 6333124  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 7460563 - 7460612
Alignment:
Q  373 taacctttcttagctggttccctgccggttcttccccttcgagggtaagg 422  Q
    |||||||| |||| |||||  |||||||||||||||||||||||||||||    
T  7460563 taaccttttttagatggttttctgccggttcttccccttcgagggtaagg 7460612  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 4734115 - 4734034
Alignment:
Q  135 cttaacagctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgttcctcaagtaatcttccttcttct 216  Q
    |||||||| || |||||||||||| |||||| ||||||||||  ||||||| |||||||||||| |||||||  ||||||||    
T  4734115 cttaacagttgcacaagcttatgttgcaagtgagttagagttgtaagtggtagcttgttcctcatgtaatctctcttcttct 4734034  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 11021770 - 11021816
Alignment:
Q  183 ggttgcttgttcctcaagtaatcttccttcttctaccattcttaaca 229  Q
    |||| |||| ||||||||||||||||| |||||| ||||||||||||    
T  11021770 ggttacttgctcctcaagtaatcttccatcttcttccattcttaaca 11021816  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 14932079 - 14932175
Alignment:
Q  137 taacagctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgttcctcaagta--atcttc--cttcttctaccattcttaaca 229  Q
    |||||| |||||| |||||||||||||||||||| ||||||   | | |  |||||||||||||||  ||||||  |||||||| ||||||||||||    
T  14932079 taacagttgtacatgcttatgtggcaagttagttcgagttatgggagataacttgttcctcaagtaatatcttcttcttcttcttccattcttaaca 14932175  T

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