View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0583_low_32 (Length: 480)
Name: NF0583_low_32
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_32 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 28 - 474
Target Start/End: Original strand, 27994481 - 27994927
Alignment:
| Q |
28 |
caacccaaaagctaaatattttcaatgctgatcttagcaacccaaagagttttaatgcagcaattgaagggtgcattggagtattccacacagctactcc |
127 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27994481 |
caacccaaaagttaaatattttcaatgctgatcttagcaacccaaagagttttaatgcagcaattgaagggtgcattggagtattccacacagctactcc |
27994580 |
T |
|
| Q |
128 |
aattgattttgaactggaagaacctgaggaaatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacattg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27994581 |
aattgattttgaactggaagaacctgaggaaatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacattg |
27994680 |
T |
|
| Q |
228 |
aagagagttatttacacctctagtgcttctgctgtgtatacgcaagataaagaagaagatacaatggatgaaagttattggagtgatgtgaatattctta |
327 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27994681 |
aaaagagttatttacacctctagtgcttctgctgtgtatacgcaagataaagaagaagatacaatggatgaaagttattggagtgatgtgaatattctta |
27994780 |
T |
|
| Q |
328 |
gaactttgaagccatttgcttggtcatatggtgtttctaagacactagctgagaaagctgttcttgaatttggagaacaacatgggttggatattgtgac |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27994781 |
gaactttgaagccatttgcttggtcatatggtgtttctaagacactagctgagaaagctgttcttgaatttggagaacaacatgggttggatattgtgac |
27994880 |
T |
|
| Q |
428 |
tcttgtaccaccttttgttgtaggacctttcatttgtcctatgctac |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
27994881 |
tcttgtaccaccttttgttgtaggacctttcatttgtcctaagctac |
27994927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 33 - 474
Target Start/End: Original strand, 27985304 - 27985745
Alignment:
| Q |
33 |
caaaagctaaatattttcaatgctgatcttagcaacccaaagagttttaatgcagcaattgaagggtgcattggagtattccacacagctactccaattg |
132 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27985304 |
caaaagctacaaattttcaatgctgatcttagcaaccctgaaagtttcaatgcagcaattgaagggtgcattggagtattccacacagctactccagttg |
27985403 |
T |
|
| Q |
133 |
attttgaactggaagaacctgaggaaatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacattgaagag |
232 |
Q |
| |
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||||||||||| ||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
27985404 |
attttgaactgaaagaaccagaggaaattgtgataaaaagaaccattgatggggcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaag |
27985503 |
T |
|
| Q |
233 |
agttatttacacctctagtgcttctgctgtgtatacgcaagataaagaagaagatacaatggatgaaagttattggagtgatgtgaatattcttagaact |
332 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| | |||| | ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27985504 |
agttgtttacacctcaagtgcttctgctgtgtgcatgcaaaacaaagaagtagaggtaatggatgaaagttattggagtgatgtgaataatcttagaact |
27985603 |
T |
|
| Q |
333 |
ttgaagccatttgcttggtcatatggtgtttctaagacactagctgagaaagctgttcttgaatttggagaacaacatgggttggatattgtgactcttg |
432 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
27985604 |
ttgaaaccttttgcttggtcatatgctgtttctaaaaccctagctgagaaagctgttcttgaatttggagaacaacatggtttggatattgtgactcttc |
27985703 |
T |
|
| Q |
433 |
taccaccttttgttgtaggacctttcatttgtcctatgctac |
474 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| ||||| |
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|
| T |
27985704 |
tacccacttttgttgttggacctttcatttgtcctaagctac |
27985745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 45 - 468
Target Start/End: Original strand, 27959008 - 27959431
Alignment:
| Q |
45 |
attttcaatgctgatcttagcaacccaaagagttttaatgcagcaattgaagggtgcattggagtattccacacagctactccaattgattttgaactgg |
144 |
Q |
| |
|
|||||||| ||||||||| |||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
27959008 |
attttcaacgctgatctttgcaacccagaaagtttcgatgcagcaattgaagggtgcattggaatattccacacagctactccaattgattttgaagaga |
27959107 |
T |
|
| Q |
145 |
aagaacctgaggaaatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacattgaagagagttatttacac |
244 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
27959108 |
acgaacgggaggaaatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacac |
27959207 |
T |
|
| Q |
245 |
ctctagtgcttctgctgtgtatacgcaagataaagaagaagatacaatggatgaaagttattggagtgatgtgaatattcttagaactttgaagccattt |
344 |
Q |
| |
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|| ||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
27959208 |
ttcaagtgcttctgctgtgtatatgcaagacaaagaagaagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagcctttt |
27959307 |
T |
|
| Q |
345 |
gcttggtcatatggtgtttctaagacactagctgagaaagctgttcttgaatttggagaacaacatgggttggatattgtgactcttgtaccaccttttg |
444 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |
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| T |
27959308 |
gcttggtcatatgctgtttctaaaaccctagctgagaaagctgttcttgaatttggagaacaacatggtttggatattgtaactcttgtaccaagttttg |
27959407 |
T |
|
| Q |
445 |
ttgtaggacctttcatttgtccta |
468 |
Q |
| |
|
|||| ||||| || ||||| |||| |
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|
| T |
27959408 |
ttgttggaccctttatttgcccta |
27959431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 31 - 466
Target Start/End: Original strand, 28013162 - 28013597
Alignment:
| Q |
31 |
cccaaaagctaaatattttcaatgctgatcttagcaacccaaagagttttaatgcagcaattgaagggtgcattggagtattccacacagctactccaat |
130 |
Q |
| |
|
||||||||||||| | |||| ||||||||| || | |||| | ||||| ||||||||||||||||| ||||||||| |||||||||| ||||||||||| |
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|
| T |
28013162 |
cccaaaagctaaaattcttcagtgctgatctaagtatcccagaaagtttcaatgcagcaattgaaggatgcattggaatattccacactgctactccaat |
28013261 |
T |
|
| Q |
131 |
tgattttgaactggaagaacctgaggaaatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacattgaag |
230 |
Q |
| |
|
|||||| ||| || | ||| | || |||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28013262 |
tgatttggaaatgaatgaatcagaagaaacagtgacaaaaagaacaattgatggaacattaggaattctaaaagcatgcaaaaattcaaagaccgtgaag |
28013361 |
T |
|
| Q |
231 |
agagttatttacacctctagtgcttctgctgtgtatacgcaagataaagaagaagatacaatggatgaaagttattggagtgatgtgaatattcttagaa |
330 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| |||||||||||| || ||| ||||||||| |||||||||||||||| ||| |||||||| |
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|
| T |
28013362 |
agagttatttacacttcaagtgcttctgctgtgtattggcaagataaagatgatgatgtaatggatgagagttattggagtgatgaaaatcttcttagag |
28013461 |
T |
|
| Q |
331 |
ctttgaagccatttgcttggtcatatggtgtttctaagacactagctgagaaagctgttcttgaatttggagaacaacatgggttggatattgtgactct |
430 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| || | || ||||||||||||||||||||||||||||||||||| || ||| |||||||| | |
|
|
| T |
28013462 |
atttgaaaccatttgcttggtcatattcaatttctaaaactatggcagagaaagctgttcttgaatttggagaacaacatggtttagatgttgtgactat |
28013561 |
T |
|
| Q |
431 |
tgtaccaccttttgttgtaggacctttcatttgtcc |
466 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||| |
|
|
| T |
28013562 |
aataccaacttttgttcttggaccattcatttgtcc |
28013597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 53 - 468
Target Start/End: Original strand, 28005245 - 28005660
Alignment:
| Q |
53 |
tgctgatcttagcaacccaaagagttttaatgcagcaattgaagggtgcattggagtattccacacagctactccaattgattttgaactggaagaacct |
152 |
Q |
| |
|
||||||||| || | |||| | ||||| |||||||||||||||||||| || |||||||||| || | |||||| ||| | ||| || | ||| | |
|
|
| T |
28005245 |
tgctgatctaagtatcccagaaagtttcaatgcagcaattgaagggtgttcaggcatattccacactgcaagtccaatggatatggaaatgaacgaatca |
28005344 |
T |
|
| Q |
153 |
gaggaaatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacattgaagagagttatttacacctctagtg |
252 |
Q |
| |
|
|| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| |
|
|
| T |
28005345 |
gaagaaacagtgacaaaaagaacaattgatggagcattaggaattctaaaagcatgcaaaaattcaaagaccgtgaagagagttatttacacttcaagtg |
28005444 |
T |
|
| Q |
253 |
cttctgctgtgtatacgcaagataaagaagaagatacaatggatgaaagttattggagtgatgtgaatattcttagaactttgaagccatttgcttggtc |
352 |
Q |
| |
|
|||| || |||||| |||||||||||| || || ||||||||| |||||||||||||||| |||||||||||| |||||| ||||||| |||||| |
|
|
| T |
28005445 |
cttcagcagtgtattggcaagataaagatgacaatgtaatggatgagagttattggagtgatgaaaatattcttagagatttgaaaccatttggttggtc |
28005544 |
T |
|
| Q |
353 |
atatggtgtttctaagacactagctgagaaagctgttcttgaatttggagaacaacatgggttggatattgtgactcttgtaccaccttttgttgtagga |
452 |
Q |
| |
|
||| ||||||| ||| | || ||||| | |||||| || ||||||||||||| ||| || ||| |||||||| | ||||| |||| ||||| ||| |
|
|
| T |
28005545 |
gtattcaatttctaaaacaatggcagagaaggttgttctagagtttggagaacaacttggtttagatgttgtgactataataccaactttagttgttgga |
28005644 |
T |
|
| Q |
453 |
cctttcatttgtccta |
468 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
28005645 |
tccttcatttgtccta |
28005660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 147 - 412
Target Start/End: Original strand, 27944561 - 27944826
Alignment:
| Q |
147 |
gaacctgaggaaatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacattgaagagagttatttacacct |
246 |
Q |
| |
|
||||| || |||||||||||||||||||| | || || |||||||| ||| |||||||||| |||||||||||| |||||||| |||| ||||| | |
|
|
| T |
27944561 |
gaaccagaagaaatagtgacaaaaagaacagtcgacggcgcattaggcattttaaaagcatgtgtgaattcaaagacagtgaagagatttatatacactt |
27944660 |
T |
|
| Q |
247 |
ctagtgcttctgctgtgtatacgcaa-gataaagaagaagatacaatggatgaaagttattggagtgatgtgaatattcttagaactttgaagccatttg |
345 |
Q |
| |
|
| |||| ||||||||| | | ||| | ||||| ||||| ||||||| ||| ||||||||||||| || | ||||||| | | || ||||||| |
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|
| T |
27944661 |
caagtggttctgctgtttc-attcaatggaaaagacaaagatgtgttggatgagagtgattggagtgatgttgatttgcttagaagtgttaaaccatttg |
27944759 |
T |
|
| Q |
346 |
cttggtcatatggtgtttctaagacactagctgagaaagctgttcttgaatttggagaacaacatgg |
412 |
Q |
| |
|
|||| |||| ||||||||||||| | |||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
27944760 |
gttggaattatgctgtttctaagacattggctgagaaagctgttcttgaatttggtgaacaaaatgg |
27944826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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