View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_35 (Length: 474)
Name: NF0583_low_35
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 30 - 463
Target Start/End: Complemental strand, 34848095 - 34847662
Alignment:
| Q |
30 |
ccaaatcatccagcttttcagaattctagatggaaatggattttgaacctccctttttaaagatatacaacactctattggnnnnnnntcttggagataa |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34848095 |
ccaaatcatccagcttttcagaattctagatggaaatggattttgaacctccctttttaaagatatacaacactctattggaaaaaaatcttggagataa |
34847996 |
T |
|
| Q |
130 |
ttcagaaaatgatttgtactctaaggtagagggaagtgaggaactacctttgattgatcttgagaagttaaatcttgaagatcctaaaagagaagagtgc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34847995 |
ttcagaaaatgatttgtactctaaggtagagggaagtgaggaactacctttgattgatcttgagaagttaaatcttgaagatcctaaaagagaagagtgc |
34847896 |
T |
|
| Q |
230 |
atgaaagaaataagtgaagctgctagtaaatggggtttctttcagattattaatcatggaatttcaaatgagattttggacaagatgatatatgagcaaa |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||| |
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| T |
34847895 |
atgaaagaaataagtgaagctgctagtaaatggggtttctttcagattattaatcatggaatttcaaatgagattctgaacaagatgatatctgagcaaa |
34847796 |
T |
|
| Q |
330 |
agaaattgttctatcaaccttttgtgaacaagttatcagcagaaactgtctttaatttgtctccaaaaacatacagatgggggaatccatgtgctaccaa |
429 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34847795 |
agaaattgttctatcaaccttttgtgaacaagttatctgcagaaactgtctttaatttgtctccaaaaacatacagatgggggaatccatgtgctaccaa |
34847696 |
T |
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| Q |
430 |
tctaagacagctttcttggtctgaagcctttcat |
463 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34847695 |
tctaagacagctttcttggtctgaagcctttcat |
34847662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 34818680 - 34818729
Alignment:
| Q |
218 |
agagaagagtgcatgaaagaaataagtgaagctgctagtaaatggggttt |
267 |
Q |
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|||||||| |||||||||||||| | |||||||||||| ||||||||||| |
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| T |
34818680 |
agagaagaatgcatgaaagaaatcactgaagctgctagaaaatggggttt |
34818729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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