View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0583_low_37 (Length: 463)
Name: NF0583_low_37
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_37 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 109 - 463
Target Start/End: Original strand, 38815928 - 38816282
Alignment:
| Q |
109 |
acttaggccatgtctcttggtcatgcgggactaaacccgacctctcaagtccaacacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgcc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38815928 |
acttaggccatgtctcttggtcatgcgggactaaacccgacctctcaagtccaacacaatgaaggtgttggaagcgacaatgagggaaaacccaaatgcc |
38816027 |
T |
|
| Q |
209 |
gcaattaaggtggttagaggcagaccacaattaaagtagaatttcccaacaacagtaaaattaattttaaaaattacacttctataactaggtttacatt |
308 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816028 |
gcaattaaggtggttagaggcagtccacaattaaagtagaatttcccaacaacagtaaaattaattttaaaaattacacttctataactaggtttacatt |
38816127 |
T |
|
| Q |
309 |
tctatcttatccaattcccttcacagaatcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacatcaa |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38816128 |
tctatcttatccaattcccttcacagaatcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaa |
38816227 |
T |
|
| Q |
409 |
tttctcacctacccaaagaaacctcatacaactatatacccttctctaacagaca |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816228 |
tttctcacctacccaaagaaacctcatacaactatatacccttctctaacagaca |
38816282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 38815691 - 38815781
Alignment:
| Q |
23 |
atcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcgcactgtccaaacttacaagcactactactta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38815691 |
atcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcgcactgtccaaacttacaagcactactactta |
38815781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 38821542 - 38821591
Alignment:
| Q |
263 |
gtaaaattaattttaaaaattacacttctataactaggtttacatttcta |
312 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
38821542 |
gtaaaattaattttaaaaaaggcacttctataactaggtctatatttcta |
38821591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 5424847 - 5424925
Alignment:
| Q |
135 |
gggactaaacccgacctctcaagtccaacacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgccgcaatt |
214 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||| || |||||| |||||||| ||| ||||||||| |
|
|
| T |
5424847 |
gggactaaacccaccctctcaaaggcaacacaatgaaggtgttggaggctgcaatgaaggaaaacc-aaaggccgcaatt |
5424925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 7252292 - 7252252
Alignment:
| Q |
25 |
catcttagagtttgggttgagtctaattcaaccctacaaaa |
65 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
7252292 |
catcttagaatttgggttgagcctaactcaaccctacaaaa |
7252252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 2115576 - 2115530
Alignment:
| Q |
26 |
atcttagagtttgggttgagtctaattcaaccctacaaaatcggctt |
72 |
Q |
| |
|
|||||| | |||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
2115576 |
atcttaaaatttgggttgagtctaattgaaccctacaaaaccggctt |
2115530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 21048692 - 21048749
Alignment:
| Q |
25 |
catcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcg |
82 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||| || ||||| ||||||| ||||||| |
|
|
| T |
21048692 |
catcttagaatttgggttgagcctaactcaaccttataaaattggcttgtaaggtgcg |
21048749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 22867069 - 22866994
Alignment:
| Q |
163 |
cacaatgaaggtgttggaagcgacaatgagggaaaacctaaatgccgcaattaaggtggttagaggcagaccacaat |
239 |
Q |
| |
|
||||| ||||||||||||||| |||||| || |||| |||| ||||||||||||| | ||| ||||||||||||| |
|
|
| T |
22867069 |
cacaacgaaggtgttggaagctgcaatgaaggcaaac-taaaggccgcaattaaggcgactaggggcagaccacaat |
22866994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 77 times since January 2019
Visitors: 3831