View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_38 (Length: 461)
Name: NF0583_low_38
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_38 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 461
Target Start/End: Original strand, 1814731 - 1815184
Alignment:
| Q |
10 |
aagaatatataact--actaatataataattttggtccatttatgatagactaaactatatttggttcatcaatagaccgatgagagtattcaaatagaa |
107 |
Q |
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| T |
1814731 |
aagaatatataactgtactaatataataattttggtccatttatgatagactaaactatatttggttcatcaatagaccgatgagagtattcaaatagaa |
1814830 |
T |
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| Q |
108 |
tatatagaactgttgcattatgcgttgattctatgatattcataatcttatagctaggtagttaggcctttaggcggcctctgtttgtgtgggtcatgtc |
207 |
Q |
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| T |
1814831 |
tatatagaactgttgcattatgtgttgattctatgatattcataatcttatagctaggtagttaggcctttaggcggcctctgtttgcgtcggtcatgtc |
1814930 |
T |
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| Q |
208 |
ttcaactagatcagtgcaggaacaaaggagacggtgagtggctgatcagatgactgcgcgaagggaaggtcgcatggaagtcagttcgcggctgtttgga |
307 |
Q |
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| T |
1814931 |
ttcaactagatcagtgcaggaacaaaggagacggtgaatggctgatcagatgactgcacgaagggaaggtcgcatggaagtcggttcgcggctgtttgga |
1815030 |
T |
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| Q |
308 |
cgcggaagcgtgtttgaagggcacaacggcaatggaggggcgcaaagaggagggcgcggaaacaacgtttttgcagaaaacacagcggctgtggtggcag |
407 |
Q |
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| T |
1815031 |
cgtggaagcgtgtttgaagggcacaatggcaatggagcggagcaaagaggagggcgcggaaacaacgtttttgcagaaaacacagcggctgtggtggcgg |
1815130 |
T |
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| Q |
408 |
tgcaagggaggggcgtggcggcagctatatgtgggtgaggggttgagagagaga |
461 |
Q |
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| T |
1815131 |
cgcaagggaggggtgtggcggctgctatatgtgggtgagggtttgagagagaga |
1815184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 1830412 - 1830524
Alignment:
| Q |
64 |
tatatttggttcatcaatagaccgatgagagtattcaaatagaatatatagaactgttgcattatgcgttgattctatgatattcataatcttatagcta |
163 |
Q |
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|||||| ||||||| |||| ||| ||||||||||| |||||||||| | | ||||||||||||||| ||||||||||||||| ||||||||||| |||| |
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| T |
1830412 |
tatattaggttcattaatataccaatgagagtatttaaatagaatacacataactgttgcattatgtgttgattctatgatacgcataatcttatggcta |
1830511 |
T |
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| Q |
164 |
ggtagttaggcct |
176 |
Q |
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| T |
1830512 |
ggtagttaggcct |
1830524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 1830520 - 1830560
Alignment:
| Q |
183 |
ggcctctgtttgtgtgggtcatgtcttcaactagatcagtg |
223 |
Q |
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| T |
1830520 |
ggcctctgtttgcatgggtcgtgtcttcaactagatcagtg |
1830560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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