View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_39 (Length: 458)

Name: NF0583_low_39
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_39
NF0583_low_39
[»] chr6 (4 HSPs)
chr6 (43-450)||(8909505-8909911)
chr6 (69-112)||(7457123-7457166)
chr6 (70-113)||(19214929-19214972)
chr6 (67-113)||(8848389-8848437)
[»] chr5 (1 HSPs)
chr5 (34-359)||(40882130-40882454)
[»] chr8 (3 HSPs)
chr8 (6-46)||(1755527-1755567)
chr8 (6-46)||(1766183-1766223)
chr8 (76-114)||(27817127-27817165)
[»] chr7 (2 HSPs)
chr7 (67-144)||(6768576-6768653)
chr7 (67-112)||(26646032-26646077)
[»] scaffold0017 (1 HSPs)
scaffold0017 (72-113)||(38722-38763)
[»] chr4 (1 HSPs)
chr4 (67-112)||(51030293-51030338)


Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 43 - 450
Target Start/End: Complemental strand, 8909911 - 8909505
Alignment:
Q  43 cagttattccatcaataaaaagatatagtaagagaataagagaggattagaacacatcataattgttattttctaatacaaacaattttagacataagat 142  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8909911 cagttattccatcaataaaaggatatagtaagagaataagagaggattagaacacatcataattgttattttttaatacaaacaattttagacataagat 8909812  T
Q  143 aaaacatactcaccataaaatagaaatataaataaaacataatctctttaacacattgtcatacaaaaaacaatatctttagcactttacatttccgaaa 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8909811 aaaacatactcaccataaaatagaaatataaataaaacataatctctttaacacattgtcatacaaaaaacaatatctttagcactttacatttctgaaa 8909712  T
Q  243 tggaataaagctagttatataatcactttatcgaagtgtgtttcaaaacatgtatatatacttacattttgagctttctcctagtaatgttttctgttct 342  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  8909711 tggaataaagctagttatataatcactttatcaaagtgtgtttcaaaacatgta--tatacttacattttgagctttctcctagtaatgttttctattct 8909614  T
Q  343 ctacttcttatgtttccttggtcagagaaaatttgatggttatagcaaaggataagagtgattccgtggcc-nnnnnnncactaccattttccttgtctg 441  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||||    
T  8909613 ctacttcttatgttttcttggttagagaaaatttgatggttatagcaaaggataacagtgattccgtggccttttttttcactaccattttccttgtctg 8909514  T
Q  442 cttcatctc 450  Q
    |||| ||||    
T  8909513 cttcttctc 8909505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 7457123 - 7457166
Alignment:
Q  69 agtaagagaataagagaggattagaacacatcataattgttatt 112  Q
    ||||| |||||||||||||||||||||||| | |||||||||||    
T  7457123 agtaaaagaataagagaggattagaacacaccgtaattgttatt 7457166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 19214929 - 19214972
Alignment:
Q  70 gtaagagaataagagaggattagaacacatcataattgttattt 113  Q
    ||||| |||||||||||||||||||||||  |||||||||||||    
T  19214929 gtaagtgaataagagaggattagaacacactataattgttattt 19214972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 8848389 - 8848437
Alignment:
Q  67 atagtaagagaataagagaggatt--agaacacatcataattgttattt 113  Q
    ||||||||||||||||||||||||  |||||||| ||||||| ||||||    
T  8848389 atagtaagagaataagagaggattagagaacacaccataattattattt 8848437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 34 - 359
Target Start/End: Original strand, 40882130 - 40882454
Alignment:
Q  34 tcaagtagccagttattccatcaataaaaagatatagtaagagaataagagaggattagaacacatcata--attgttattttctaatacaaacaatttt 131  Q
    ||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  40882130 tcaagtagc-agttattccatcaataaaaagatataataaaagaataagagaggattagaacacatcatataattgttattttttaatacaaacaatttt 40882228  T
Q  132 agacataagataaaacatactcaccataaaatagaaatataaataaaacataatctctttaacacattgtcatacaaaaaacaatatctttagcacttta 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40882229 agacataagataaaacatactcaccataaaatagaaatataaataaaacataatctctttaacacattgtcatacaaaaaacaatatctttagcacttta 40882328  T
Q  232 catttccgaaatggaataaagctagttatataatcactttatcgaagtgtgtttcaaaacatgtatatatacttacattttgagctttctcctagtaatg 331  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  40882329 catttccgaaatggaataaagctagttatataatcactttatcaaagtgtgtttcaaaacatg--tatatacttacattttgagctttctcctagtaatg 40882426  T
Q  332 ttttctgttctctacttcttatgtttcc 359  Q
    |||||| |||||||||||||||||||||    
T  40882427 ttttctattctctacttcttatgtttcc 40882454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 1755527 - 1755567
Alignment:
Q  6 acaattttaacgaccaagaaagattcgatcaagtagccagt 46  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1755527 acaattttaacgaccaagaaagattcgatcaagtagccagt 1755567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 1766223 - 1766183
Alignment:
Q  6 acaattttaacgaccaagaaagattcgatcaagtagccagt 46  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1766223 acaattttaacgaccaagaaagattcgatcaagtagccagt 1766183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 27817165 - 27817127
Alignment:
Q  76 gaataagagaggattagaacacatcataattgttatttt 114  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  27817165 gaataagagaggattagaacacaccgtaattgttatttt 27817127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 6768576 - 6768653
Alignment:
Q  67 atagtaagagaataagagaggattagaacacatcataattgttattttctaatacaaacaattttagacataagataa 144  Q
    ||||||||||||||||| ||| ||||||| || | |||||| |||||  ||||||||| | ||||| |||||||||||    
T  6768576 atagtaagagaataagaaaggtttagaacgcaccctaattgctatttattaatacaaatagttttaaacataagataa 6768653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 26646077 - 26646032
Alignment:
Q  67 atagtaagagaataagagaggattagaacacatcataattgttatt 112  Q
    ||||||||||||||| |||| ||||||||||| |||| ||||||||    
T  26646077 atagtaagagaataaaagagaattagaacacaccatagttgttatt 26646032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 38722 - 38763
Alignment:
Q  72 aagagaataagagaggattagaacacatcataattgttattt 113  Q
    ||||||||||||||||||||||||| |  |||||||||||||    
T  38722 aagagaataagagaggattagaacatactataattgttattt 38763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 51030293 - 51030338
Alignment:
Q  67 atagtaagagaataagagaggattagaacacatcataattgttatt 112  Q
    ||||||||||||||| |||| ||||||||||| |||| ||||||||    
T  51030293 atagtaagagaataaaagagaattagaacacaccatagttgttatt 51030338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 99 times since January 2019
Visitors: 3831