View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_44 (Length: 444)
Name: NF0583_low_44
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 30 - 430
Target Start/End: Complemental strand, 37959232 - 37958832
Alignment:
| Q |
30 |
aaaacatgcacgaaccaattaaaatttcaaagcttgtagtccttgttcaatgatagaagagaaatattcaaaatcctcggatttgaataccaacccaacc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37959232 |
aaaacatgcacgaaccaattaaaatttcaaagcttgtagtccttgttcaatgatagaagagaaatatttaaaatcctcggatttgaataccaacccaacc |
37959133 |
T |
|
| Q |
130 |
tcaagtccaccttctctatcttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcagtct |
229 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37959132 |
tcaagtccaccttctctattttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttagcaggttttccaaatccaaaatcagtct |
37959033 |
T |
|
| Q |
230 |
cataaacattaaacttaggtgaacctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccatatctttaagagg |
329 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37959032 |
cataaacattaaacttaggcgaacctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccatatctttaaaagg |
37958933 |
T |
|
| Q |
330 |
ttcatttttcatttcacttattaccttttcaattaccttaacagcattcacataaccatcttcccccttcatatcctttctcttcatagttgcatgacat |
429 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37958932 |
ttcatttttcatttcacttattaccctttcaattaccttaacagcattcacataaccatcttcccccttcatatcctttctcttcatagttgcatgacat |
37958833 |
T |
|
| Q |
430 |
a |
430 |
Q |
| |
|
| |
|
|
| T |
37958832 |
a |
37958832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 53 - 430
Target Start/End: Original strand, 37895993 - 37896370
Alignment:
| Q |
53 |
atttcaaagcttgtagtccttgttcaatgatagaagagaaatattcaaaatcctcggatttgaataccaacccaacctcaagtccaccttctctatcttc |
152 |
Q |
| |
|
|||||||||||| ||||| |||||||| | || | | ||||||||||| || | ||| || ||||||||||||||||| ||||||||||||||| | |
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|
| T |
37895993 |
atttcaaagcttcaagtccatgttcaattacagcacaaaaatattcaaattctccacttttaaacaccaacccaacctcaagaccaccttctctatctcc |
37896092 |
T |
|
| Q |
153 |
actttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcagtctcataaacattaaacttaggtgaa |
252 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37896093 |
actttcagcaatagacatacacttaaacgaatgcaccatttcaactttaacaggtctaccaaatccaaaatcagtctcataaacattaaacttaggtgat |
37896192 |
T |
|
| Q |
253 |
cctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccatatctttaagaggttcatttttcatttcacttatta |
352 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||| | |||||||| ||||||||||||||||||||||||| |
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|
| T |
37896193 |
cctgttaccaacaatacacttcccacctcatacatcttcttaaatgtatccctccattctcctacatctttaaaaggttcatttttcatttcacttattg |
37896292 |
T |
|
| Q |
353 |
ccttttcaattaccttaacagcattcacataaccatcttcccccttcatatcctttctcttcatagttgcatgacata |
430 |
Q |
| |
|
|| |||||||| | |||||| |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||| |
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|
| T |
37896293 |
ccctttcaatttctttaacaccattcacaaaaccatcttcccccttcataacctttctcttcacagttgcatgacata |
37896370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 38 - 426
Target Start/End: Complemental strand, 37953480 - 37953092
Alignment:
| Q |
38 |
cacgaaccaattaaaatttcaaagcttgtagtccttgttcaatgatagaagagaaatattcaaaatcctcggatttgaataccaacccaacctcaagtcc |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||| |
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| T |
37953480 |
cacgaaccaattaaaatttcaaagcttgtagtccttgttgaatgacagaagagaaacattcataatcctcagatttgaatgccaacccaacctcaagtcc |
37953381 |
T |
|
| Q |
138 |
accttctctatcttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcagtctcataaaca |
237 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| | |||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37953380 |
accttctctatctccactttcagcaatagacatacactttaatgaatgcatcatttcaactttaactggttttccaaatccaaaatcagtctcataaaca |
37953281 |
T |
|
| Q |
238 |
ttaaacttaggtgaacctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccatatctttaagaggttcatttt |
337 |
Q |
| |
|
|||||||||||||| || |||| || |||| | |||| |||||| ||||||||| | | | ||||| | |||||||||||||||||||| |
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|
| T |
37953280 |
ttaaacttaggtgacccccttacaaataacaaatttccaaactcacctatctttttagctgaaccttcccattttgttgcatctttaagaggttcatttt |
37953181 |
T |
|
| Q |
338 |
tcatttcacttattaccttttcaattaccttaacagcattcacataaccatcttcccccttcatatcctttctcttcatagttgcatga |
426 |
Q |
| |
|
|||| ||| ||||| |||| |||||||||||||||||||||||| |||||||||| || |||| ||| |||||||||| ||||||||| |
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|
| T |
37953180 |
tcatctcagttattgccttctcaattaccttaacagcattcacaaaaccatcttctcctttcacatctcttctcttcatcgttgcatga |
37953092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 67 - 251
Target Start/End: Original strand, 39711793 - 39711977
Alignment:
| Q |
67 |
agtccttgttcaatgatagaagagaaatattcaaaatcctcggatttgaataccaacccaacctcaagtccaccttctctatcttcactttcagcaatag |
166 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||| ||||| ||| | ||||||||||| ||||||||||||||||| |||| |||||||||||| || |
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| T |
39711793 |
agtccttgttgaataagagaagagaaatattcaaactcctcacttttaagtaccaacccaaactcaagtccaccttctccatctccactttcagcaagag |
39711892 |
T |
|
| Q |
167 |
acatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcagtctcataaacattaaacttaggtga |
251 |
Q |
| |
|
||| || | |||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
39711893 |
acacacccttaaatgcatgcaccatctcaactttaacaggttttccaaatccaaaattggtctcataaacattaaacttaggtga |
39711977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 53 - 248
Target Start/End: Original strand, 11527401 - 11527596
Alignment:
| Q |
53 |
atttcaaagcttgtagtccttgttcaatgatagaagagaaatattcaaaatcctcggatttgaataccaacccaacctcaagtccaccttctctatcttc |
152 |
Q |
| |
|
|||| ||||||| |||||||||| ||||| |||||| ||||||||||| ||||| ||| | ||||||||||| ||||||||||||||||| |||| | |
|
|
| T |
11527401 |
attttaaagcttcaagtccttgttgaatgagagaagataaatattcaaattcctcacttttaagtaccaacccaaactcaagtccaccttctccatctcc |
11527500 |
T |
|
| Q |
153 |
actttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcagtctcataaacattaaacttagg |
248 |
Q |
| |
|
||||||||||| ||||| | | || |||| |||||||| ||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||| |
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|
| T |
11527501 |
actttcagcaagagacacagccatagatggatgcaccatctcaactttaacaggtcttccaaatccaaattcggtctcataaacattaaatttagg |
11527596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 321 - 423
Target Start/End: Original strand, 39712047 - 39712149
Alignment:
| Q |
321 |
tttaagaggttcatttttcatttcacttattaccttttcaattaccttaacagcattcacataaccatcttcccccttcatatcctttctcttcatagtt |
420 |
Q |
| |
|
|||||||||||||||||| || ||| | | |||||||||||||||||||| ||| ||| ||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
39712047 |
tttaagaggttcattttttatctcattaacagccttttcaattaccttaacaacatcaacaaaactatctattcccttcatatcctttctcttcatggtt |
39712146 |
T |
|
| Q |
421 |
gca |
423 |
Q |
| |
|
||| |
|
|
| T |
39712147 |
gca |
39712149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 423
Target Start/End: Original strand, 11527654 - 11527771
Alignment:
| Q |
306 |
ccattctcccatatctttaagaggttcatttttcatttcacttattaccttttcaattaccttaacagcattcacataaccatcttcccccttcatatcc |
405 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| | ||| | |||||||||||||||||||| ||| ||| ||| || ||| || ||||||||| |
|
|
| T |
11527654 |
ccattcttccacatctttaagaggttcattttttacctcagcaacaaccttttcaattaccttaacgacatcaacaaaactattttctcctttcatatcc |
11527753 |
T |
|
| Q |
406 |
tttctcttcatagttgca |
423 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
11527754 |
tttctcttcattgttgca |
11527771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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