View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_46 (Length: 432)

Name: NF0583_low_46
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_46
NF0583_low_46
[»] chr8 (11 HSPs)
chr8 (34-414)||(30213726-30214108)
chr8 (50-258)||(20049552-20049768)
chr8 (107-241)||(29290946-29291080)
chr8 (107-259)||(27137795-27137948)
chr8 (50-105)||(13281250-13281305)
chr8 (308-414)||(14547662-14547767)
chr8 (111-207)||(18529791-18529887)
chr8 (308-370)||(23586728-23586788)
chr8 (308-377)||(12842634-12842703)
chr8 (305-382)||(27137689-27137766)
chr8 (307-367)||(33929250-33929310)
[»] chr7 (12 HSPs)
chr7 (50-259)||(21620666-21620885)
chr7 (50-244)||(17879895-17880101)
chr7 (169-259)||(26454141-26454231)
chr7 (148-258)||(21019477-21019587)
chr7 (103-139)||(21572681-21572717)
chr7 (109-240)||(7145266-7145395)
chr7 (107-200)||(8309652-8309744)
chr7 (324-369)||(15871754-15871800)
chr7 (50-96)||(22731264-22731310)
chr7 (341-398)||(5290766-5290823)
chr7 (171-199)||(4031835-4031863)
chr7 (307-358)||(10257762-10257814)
[»] scaffold0425 (1 HSPs)
scaffold0425 (107-259)||(2439-2591)
[»] chr2 (17 HSPs)
chr2 (55-258)||(19693338-19693552)
chr2 (107-259)||(13892158-13892307)
chr2 (107-259)||(14032283-14032432)
chr2 (107-239)||(25907966-25908097)
chr2 (322-367)||(18114251-18114296)
chr2 (311-367)||(16195759-16195815)
chr2 (50-105)||(24228064-24228119)
chr2 (308-369)||(27766152-27766211)
chr2 (308-369)||(33240171-33240233)
chr2 (308-369)||(33248092-33248154)
chr2 (167-259)||(42297963-42298057)
chr2 (322-370)||(8685015-8685061)
chr2 (162-206)||(9124029-9124074)
chr2 (107-204)||(12845712-12845809)
chr2 (322-370)||(17418219-17418265)
chr2 (308-361)||(27918990-27919043)
chr2 (316-356)||(22525432-22525472)
[»] chr1 (11 HSPs)
chr1 (107-258)||(18581952-18582102)
chr1 (50-259)||(25517125-25517344)
chr1 (130-253)||(10655991-10656113)
chr1 (107-240)||(26858617-26858748)
chr1 (187-240)||(1896179-1896232)
chr1 (322-414)||(26858807-26858899)
chr1 (103-141)||(10649892-10649930)
chr1 (336-369)||(12669823-12669856)
chr1 (171-200)||(21721490-21721519)
chr1 (336-373)||(43283288-43283325)
chr1 (307-367)||(34487729-34487789)
[»] chr4 (16 HSPs)
chr4 (107-240)||(14116392-14116524)
chr4 (107-259)||(11434522-11434675)
chr4 (107-252)||(8189683-8189826)
chr4 (305-414)||(8501840-8501948)
chr4 (107-240)||(11442045-11442178)
chr4 (107-240)||(11551517-11551650)
chr4 (118-240)||(13929426-13929547)
chr4 (308-371)||(19052736-19052797)
chr4 (324-408)||(43357692-43357775)
chr4 (60-259)||(17133460-17133671)
chr4 (308-369)||(15193192-15193254)
chr4 (307-371)||(17133366-17133429)
chr4 (322-388)||(13977934-13977998)
chr4 (307-368)||(14116288-14116349)
chr4 (110-253)||(43357829-43357972)
chr4 (323-370)||(39981240-39981285)
[»] scaffold0105 (1 HSPs)
scaffold0105 (107-252)||(16258-16401)
[»] chr5 (2 HSPs)
chr5 (108-240)||(19761234-19761364)
chr5 (305-414)||(19761083-19761192)
[»] chr3 (8 HSPs)
chr3 (107-208)||(9829514-9829613)
chr3 (307-369)||(12412257-12412320)
chr3 (57-105)||(24097711-24097759)
chr3 (305-373)||(27685514-27685581)
chr3 (170-259)||(4507767-4507859)
chr3 (167-201)||(24112314-24112348)
chr3 (171-200)||(12759109-12759138)
chr3 (346-398)||(19905297-19905349)
[»] scaffold0042 (2 HSPs)
scaffold0042 (167-259)||(89535-89629)
scaffold0042 (50-105)||(89408-89463)
[»] scaffold0008 (2 HSPs)
scaffold0008 (305-367)||(9851-9913)
scaffold0008 (305-367)||(20244-20306)
[»] scaffold0194 (1 HSPs)
scaffold0194 (162-241)||(7090-7171)
[»] chr6 (5 HSPs)
chr6 (310-369)||(14757779-14757840)
chr6 (324-369)||(15478450-15478495)
chr6 (335-370)||(20395700-20395735)
chr6 (322-371)||(34659377-34659424)
chr6 (112-141)||(12870485-12870514)


Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 34 - 414
Target Start/End: Complemental strand, 30214108 - 30213726
Alignment:
Q  34 gtagttgaagaaaaagaaga---cttctatcattttacaagtgctcttactctgtcgaattatatagcgcacaaagttcttacaaactttcaatcttaaa 130  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30214108 gtagttgaagaaaaagaagaagacttctatcattttacaagtgctcttactctgtcgaattatatagcgcacaaagttcttacaaactttcaatcttaaa 30214009  T
Q  131 atttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaatcttatttatttgtttaactctgat 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30214008 atttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaatcttatttatttgtttaactctgaa 30213909  T
Q  231 tgtagaagtctcttacttgtgtgtttgagtnnnnnnnngccttttaacgtgtgtttgagcaaattgtaatctgcgcaaattgtagtcttgcgtgattata 330  Q
    ||||||||||| ||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30213908 tgtagaagtcttttacttgtgtgtttgagt-aaaagaagccttttaacgtgtgtttgagcaaattgtaatctgcgcaaattgtagtcttgcgtgattata 30213810  T
Q  331 gtgaaaaattccttggaagtacaaggggactggactactctcaaattgtgagaggaacatgtataatttgcttgtgtcgtctct 414  Q
    ||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30213809 gtgaaaaatcccttggaagtgcaaggggactggactactctcgaattgtgagaggaacatgtataatttgcttgtgtcgtctct 30213726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 258
Target Start/End: Original strand, 20049552 - 20049768
Alignment:
Q  50 aagacttctatcattttacaagtgctcttactctgtcgaattatatagcgcacaaag-----------ttcttacaaactttcaatcttaaaatttctta 138  Q
    ||||||||||||||||||||||||| ||||| || || | ||||||||||||||||            ||||||||| ||||||||| || |||||||||    
T  20049552 aagacttctatcattttacaagtgcccttaccctatcaagttatatagcgcacaaacacttagagaaattcttacaagctttcaatcatagaatttctta 20049651  T
Q  139 agtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaatcttatttatttgtttaactctgattgtagaag 238  Q
    |||| |   ||||||  || ||||||  |||||||||||||| ||||||||   |||||||||| ||||||||||||||||| |||||||||||||||||    
T  20049652 agtattatgaagtcacttgcactttagctttcttacacctctgattgtata---agtgtaaacataatcttatttatttgttaaactctgattgtagaag 20049748  T
Q  239 tctcttacttgtgtgtttga 258  Q
    ||||||||||||| ||||||    
T  20049749 tctcttacttgtgcgtttga 20049768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 107 - 241
Target Start/End: Original strand, 29290946 - 29291080
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaat 206  Q
    ||||||||||||||||||||||| |||||||||||| | | || |||| ||||||||||| ||| |||| |||| ||||||| |||| ||||||||||||    
T  29290946 ttcttacaaactttcaatcttaacatttcttaagtatttagaaatcatttgaactttaatcttcctacagctctgattgtatgtcaactgtaaacacaat 29291045  T
Q  207 cttatttatttgtttaactctgattgtagaagtct 241  Q
    ||||||||||| || ||||||||||||| ||||||    
T  29291046 cttatttatttcttaaactctgattgtaaaagtct 29291080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 107 - 259
Target Start/End: Complemental strand, 27137948 - 27137795
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaat 206  Q
    ||||||||| |||||||||||| ||||||||||||| | | ||||||| |  ||||||| |||||||||||| |  ||||||||||| |||||| |||||    
T  27137948 ttcttacaagctttcaatcttagaatttcttaagtatttagaagtcattttcactttaactttcttacacctttggttgtatatcaaatgtaaaaacaat 27137849  T
Q  207 cttatttatttg-tttaactctgattgtagaagtctcttacttgtgtgtttgag 259  Q
    ||  |||||||| || |||    |||||||||||||| || |||||||||||||    
T  27137848 ctcttttatttgattaaacataaattgtagaagtctcatagttgtgtgtttgag 27137795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 13281305 - 13281250
Alignment:
Q  50 aagacttctatcattttacaagtgctcttactctgtcgaattatatagcgcacaaa 105  Q
    ||||||||||||||||||||||| | |||||| |||| ||||||||||||||||||    
T  13281305 aagacttctatcattttacaagttcccttactttgtcaaattatatagcgcacaaa 13281250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 308 - 414
Target Start/End: Complemental strand, 14547767 - 14547662
Alignment:
Q  308 aattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggactactctcaaattgtgagaggaacatgtataatttgcttgtgt 407  Q
    ||||||| ||||| ||||||||||| ||||||  |||| ||||  ||| || || |||||||||||| |||||||||||||   |||||||||||||| |    
T  14547767 aattgtaatcttgtgtgattatagt-aaaaatctcttgaaagtgtaagagggcttgactactctcaatttgtgagaggaaccaatataatttgcttgttt 14547669  T
Q  408 cgtctct 414  Q
    |||||||    
T  14547668 cgtctct 14547662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 18529887 - 18529791
Alignment:
Q  111 tacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaatc 207  Q
    |||||||||| ||||||| ||| ||| ||||  | | ||||||| ||  |||||| ||  |||||||||||| ||||||||||||||||||||||||    
T  18529887 tacaaactttaaatcttagaatatctcaagtgtttagaagtcatttgttctttaagttagttacacctctaactgtatatcaagtgtaaacacaatc 18529791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 370
Target Start/End: Original strand, 23586728 - 23586788
Alignment:
Q  308 aattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggactactc 370  Q
    ||||||| ||| | ||||||||||||||||  ||||||||||| ||||||||||| |||||||    
T  23586728 aattgtaatctagtgtgattatagtgaaaa--tccttggaagtgcaaggggactgaactactc 23586788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 377
Target Start/End: Complemental strand, 12842703 - 12842634
Alignment:
Q  308 aattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggactactctcaaatt 377  Q
    ||||||| ||||| ||||||||||| ||||||   ||||||||  |||||||||||||||  ||||||||    
T  12842703 aattgtaatcttgtgtgattatagtaaaaaatattttggaagtgtaaggggactggactaacctcaaatt 12842634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 27137766 - 27137689
Alignment:
Q  305 gcaaattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggactactctcaaattgtgag 382  Q
    |||||||||| ||||| |||| |||||||||||||  |||| ||||   ||||||||| ||||  |||||||||||||    
T  27137766 gcaaattgtaatcttgtgtgactatagtgaaaaatctcttgaaagttgcaggggactgaactaacctcaaattgtgag 27137689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 33929250 - 33929310
Alignment:
Q  307 aaattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggacta 367  Q
    ||||| || ||||| ||||||||||||||||||   |||||||| |||| |||||||||||    
T  33929250 aaattataatcttgtgtgattatagtgaaaaatcatttggaagtgcaagaggactggacta 33929310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 50 - 259
Target Start/End: Original strand, 21620666 - 21620885
Alignment:
Q  50 aagacttctatcattttacaagtgctcttactctgtcgaattatatagcgcacaaag-----------ttcttacaaactttcaatcttaaaatttctta 138  Q
    ||||| ||||||||||||||| ||| ||||||||||| ||||||||| | ||||||            ||||||||| |||||||||||| ||||| |||    
T  21620666 aagacctctatcattttacaattgcccttactctgtcaaattatataacacacaaatacttagagaaattcttacaa-ctttcaatcttagaatttttta 21620764  T
Q  139 agtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaatcttatttatttgtttaactctgattgtagaag 238  Q
    || | || |||||||| || ||||||| |||||||||||| |  ||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  21620765 aggattctaaagtcatttgcactttaactttcttacacctatggttgaatatcaaatgtaaacacaatcttatttatttgtttaactctgattgcagaag 21620864  T
Q  239 tctcttacttgtgtgtttgag 259  Q
    ||| |||||||||||||||||    
T  21620865 tcttttacttgtgtgtttgag 21620885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 17880101 - 17879895
Alignment:
Q  50 aagacttctatcattttacaagtgctcttactctgtcgaattatatagcgcacaaag-----------ttcttacaaactttca-atcttaaaatttctt 137  Q
    |||||||||||||||||| |||||  ||||||||||| ||||||||||| ||||||            |||||||||||||||| || ||| ||||||||    
T  17880101 aagacttctatcattttaaaagtgtccttactctgtcaaattatatagcacacaaacacttacataaattcttacaaactttcatatattagaatttctt 17880002  T
Q  138 aagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaa-cacaatctta-tttatttgtttaactctgattgtag 235  Q
    ||||| ||| ||||||||||||||| ||||| ||||||||||| ||| ||||||||||||||| |||||||||| |||||||||| || | | |||||||    
T  17880001 aagta-tcagaagtcatatgaacttaaattt-cttacacctctgattatatatcaagtgtaaaccacaatcttattttatttgttaaattattattgtag 17879904  T
Q  236 aagtctctt 244  Q
    |||| ||||    
T  17879903 aagtatctt 17879895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 26454141 - 26454231
Alignment:
Q  169 tcttacacctctaattgtatatcaagtgtaaacacaatcttatttatttgtttaactctgattgtagaagtctcttacttgtgtgtttgag 259  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| || | | ||| |||||| |||||||||||| |||||||    
T  26454141 tcttacacctctgattgtatatcaagtgtaaacacaatcttatttatttgttaaattataattatagaagactcttacttgtgcgtttgag 26454231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 21019587 - 21019477
Alignment:
Q  148 aagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaac-acaatcttatttatttgtttaactctgattgtagaagtctcttac 246  Q
    ||||||| ||||||| |||||| ||||| |||| |||||||||||||||||||  | ||||||||||||||| | |||||| |||||||||||||||| |    
T  21019587 aagtcatttgaactt-aatttttttacatctctgattgtatatcaagtgtaaaatataatcttatttatttgctaaactctaattgtagaagtctctttc 21019489  T
Q  247 ttgtgtgtttga 258  Q
    || |||||||||    
T  21019488 ttatgtgtttga 21019477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 21572681 - 21572717
Alignment:
Q  103 aaagttcttacaaactttcaatcttaaaatttcttaa 139  Q
    |||||||||||||||||||||||||||||||||||||    
T  21572681 aaagttcttacaaactttcaatcttaaaatttcttaa 21572717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 7145266 - 7145395
Alignment:
Q  109 cttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaatct 208  Q
    |||||| | ||||||||||| |||||||| |||  | |||| | | ||| ||||||| ||  |||||||| | |||||| |||||||||||||| |||||    
T  7145266 cttacagagtttcaatcttagaatttctttagtgttaaaaaattacatgcactttaagttaattacacctatgattgtaaatcaagtgtaaacataatct 7145365  T
Q  209 tatttatttgtttaactctgattgtagaagtc 240  Q
      |||||||| | |||||| |||||| |||||    
T  7145366 --tttatttgataaactctaattgtaaaagtc 7145395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 8309652 - 8309744
Alignment:
Q  107 ttcttacaaactttca-atcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaa 200  Q
    |||||||||||||||| |||||| || || |||||   ||| ||||||| ||||| ||| ||| ||||||||||| |||||||||||||||||||    
T  8309652 ttcttacaaactttcatatcttataaattattaagct-tcataagtcatttgaacatta-tttgcttacacctctgattgtatatcaagtgtaaa 8309744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 15871754 - 15871800
Alignment:
Q  324 gattatagtgaaaaattccttggaagtac-aaggggactggactact 369  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||||    
T  15871754 gattatagtgaaaatatccttggaagtacaaaggggactggactact 15871800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 22731310 - 22731264
Alignment:
Q  50 aagacttctatcattttacaagtgctcttactctgtcgaattatata 96  Q
    |||||||||||||||| |||||||| | ||||||||| |||||||||    
T  22731310 aagacttctatcatttcacaagtgcccgtactctgtcaaattatata 22731264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 5290766 - 5290823
Alignment:
Q  341 ccttggaagtacaaggggactggactactctcaaattgtgagaggaacatgtataatt 398  Q
    |||| ||||| ||||||||||||||||||||| | ||||| |||||||  ||||||||    
T  5290766 ccttagaagtgcaaggggactggactactctcgatttgtgggaggaactagtataatt 5290823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 4031835 - 4031863
Alignment:
Q  171 ttacacctctaattgtatatcaagtgtaa 199  Q
    |||||||||||||||||||||||||||||    
T  4031835 ttacacctctaattgtatatcaagtgtaa 4031863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 10257762 - 10257814
Alignment:
Q  307 aaattgtagtcttgcgtgattatagtgaaaaat-tccttggaagtacaagggg 358  Q
    |||||||| ||||  |||||||||||||||||| ||||||||||| |||||||    
T  10257762 aaattgtaatcttttgtgattatagtgaaaaatgtccttggaagtgcaagggg 10257814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 107 - 259
Target Start/End: Complemental strand, 2591 - 2439
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaat 206  Q
    |||||||||||||||||||||| ||| ||| ||||  ||| ||||||||||||||||||| |||||| || | | |||||| ||||||||| | ||||||    
T  2591 ttcttacaaactttcaatcttagaatatctcaagtgttcagaagtcatatgaactttaatattcttaaacatatgattgtacatcaagtgtgatcacaat 2492  T
Q  207 cttatttatttgtttaactctgattgtagaagtctcttacttgtgtgtttgag 259  Q
    |||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||    
T  2491 cttatttatttgttaaactctggttgaagaagtctcatacttgtgtgtttgag 2439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 55 - 258
Target Start/End: Original strand, 19693338 - 19693552
Alignment:
Q  55 ttctatcattttacaagtgctcttactctgtcgaattatatagcgcacaaag-----------ttcttacaaactttcaatcttaaaatttcttaagtac 143  Q
    |||||||||||||||||||| |||||||| || |||||||||| |||||||            ||  |||||||||||||||||| |||||||||| ||     
T  19693338 ttctatcattttacaagtgcccttactctatcaaattatatagagcacaaatacttagagaaatttgtacaaactttcaatcttagaatttcttaattaa 19693437  T
Q  144 tcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaatcttatttatttgtttaactctgattgtagaagtctct 243  Q
    |   ||||||  || ||||||| ||| |||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||||| |    
T  19693438 tatgaagtcacttgcactttaagttttttacacctctgattgtatatcaaatgtaaacacaatcttatttaattgttaaactctaattgtagaagtctgt 19693537  T
Q  244 tacttgtgtgtttga 258  Q
    |||||||||||||||    
T  19693538 tacttgtgtgtttga 19693552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 107 - 259
Target Start/End: Complemental strand, 13892307 - 13892158
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaat 206  Q
    ||||||||||||||| || ||| ||||||||||||| ||||| ||||     ||||||| ||||||||||||||||||||||||||||||||||  || |    
T  13892307 ttcttacaaactttcgatattagaatttcttaagtattcaaa-gtcactc--actttaagtttcttacacctctaattgtatatcaagtgtaaaagcatt 13892211  T
Q  207 cttatttatttgtttaactctgattgtagaagtctcttacttgtgtgtttgag 259  Q
    || ||||||||||| || ||| ||||||||||| ||||| |||||||||||||    
T  13892210 ctcatttatttgttaaattctaattgtagaagtttcttatttgtgtgtttgag 13892158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 107 - 259
Target Start/End: Complemental strand, 14032432 - 14032283
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaat 206  Q
    ||||||||||||||| || ||| ||||||||||||| ||||| ||||     ||||||| ||||||||||||||||||||||||||||||||||  || |    
T  14032432 ttcttacaaactttcgatattagaatttcttaagtattcaaa-gtcactc--actttaagtttcttacacctctaattgtatatcaagtgtaaaagcatt 14032336  T
Q  207 cttatttatttgtttaactctgattgtagaagtctcttacttgtgtgtttgag 259  Q
    || ||||||||||| || ||| ||||||||||| ||||| |||||||||||||    
T  14032335 ctcatttatttgttaaattctaattgtagaagtttcttatttgtgtgtttgag 14032283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 239
Target Start/End: Original strand, 25907966 - 25908097
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaat 206  Q
    |||||| ||||||| ||||||| ||||||||||||  |   ||||||  |  || |||| || ||||||||||| ||| |||||||||||||||||||||    
T  25907966 ttcttaaaaacttttaatcttagaatttcttaagtgtttggaagtcacttacacattaagttacttacacctcttattctatatcaagtgtaaacacaat 25908065  T
Q  207 cttatttatttgtttaactctgattgtagaagt 239  Q
    ||| |||| ||| | ||||||||||||||||||    
T  25908066 ctt-tttacttgatgaactctgattgtagaagt 25908097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 367
Target Start/End: Complemental strand, 18114296 - 18114251
Alignment:
Q  322 gtgattatagtgaaaaattccttggaagtacaaggggactggacta 367  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||    
T  18114296 gtgattatagtgaaaaatatcttggaagtataaggggactggacta 18114251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 16195759 - 16195815
Alignment:
Q  311 tgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggacta 367  Q
    |||| ||||| |||||||||||||||||| |||| ||||||||| ||| ||||||||    
T  16195759 tgtaatcttgtgtgattatagtgaaaaatcccttagaagtacaaagggtctggacta 16195815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 24228064 - 24228119
Alignment:
Q  50 aagacttctatcattttacaagtgctcttactctgtcgaattatatagcgcacaaa 105  Q
    |||||||||||||||||| |||| || ||||||||||   ||||||||||||||||    
T  24228064 aagacttctatcattttaaaagttcttttactctgtcatcttatatagcgcacaaa 24228119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 27766152 - 27766211
Alignment:
Q  308 aattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggactact 369  Q
    ||||||| ||| | |||||||||||||||  ||||||||||||  |||||||||||||||||    
T  27766152 aattgtaatctagtgtgattatagtgaaa--ttccttggaagtgtaaggggactggactact 27766211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 33240233 - 33240171
Alignment:
Q  308 aattgtagtcttgcgtgattatagtgaaaaattccttggaagt-acaaggggactggactact 369  Q
    ||||||| ||||| ||||||||||||||||||  |||| |||| |||||||||||| ||||||    
T  33240233 aattgtaatcttgtgtgattatagtgaaaaatctcttgtaagtgacaaggggactgaactact 33240171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 33248154 - 33248092
Alignment:
Q  308 aattgtagtcttgcgtgattatagtgaaaaattccttggaagt-acaaggggactggactact 369  Q
    ||||||| ||||| ||||||||||||||||||  |||| |||| |||||||||||| ||||||    
T  33248154 aattgtaatcttgtgtgattatagtgaaaaatctcttgtaagtgacaaggggactgaactact 33248092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 42297963 - 42298057
Alignment:
Q  167 tttcttacacctctaattgtatatcaagtgtaaac-acaatcttatttatttg-tttaactctgattgtagaagtctcttacttgtgtgtttgag 259  Q
    |||||||||||||| | | |||||||||||||||| ||||||||  ||||||| || ||||  |||| |||||||||||| ||||| || |||||    
T  42297963 tttcttacacctctgagtatatatcaagtgtaaacaacaatctttcttatttgattaaacttagattatagaagtctctttcttgtatgattgag 42298057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 8685061 - 8685015
Alignment:
Q  322 gtgattatagtgaaaaattccttggaagtacaaggggactggactactc 370  Q
    |||||||||||||||  | |||||||||| |||||||||||||||||||    
T  8685061 gtgattatagtgaaa--tcccttggaagtgcaaggggactggactactc 8685015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 9124074 - 9124029
Alignment:
Q  162 ttaattttcttacacctctaattgtatatcaagtgt-aaacacaat 206  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||||    
T  9124074 ttaatcttcttacacctctgattgtatatcaagtgtgaaacacaat 9124029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 12845712 - 12845809
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacaca 204  Q
    |||||||||  ||||||||||| ||||||||||||  ||| ||||||  || |||| ||  |  |||||||| | |||||||||||| ||||||||||    
T  12845712 ttcttacaagttttcaatcttagaatttcttaagtgttcataagtcacttgcacttgaacatgtttacacctttgattgtatatcaactgtaaacaca 12845809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 17418219 - 17418265
Alignment:
Q  322 gtgattatagtgaaaaattccttggaagtacaaggggactggactactc 370  Q
    |||||||||||||||  |||||||||||  |||||||||||||||||||    
T  17418219 gtgattatagtgaaa--ttccttggaagcgcaaggggactggactactc 17418265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 27918990 - 27919043
Alignment:
Q  308 aattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggact 361  Q
    ||||||| ||||| ||||||||| ||||||||||||| ||| | ||||||||||    
T  27918990 aattgtaatcttgtgtgattataatgaaaaattccttagaactgcaaggggact 27919043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 22525432 - 22525472
Alignment:
Q  316 tcttgcgtgattatagtgaaaaattccttggaagtacaagg 356  Q
    ||||| |||||||||||||||| |||||||||||| |||||    
T  22525432 tcttgtgtgattatagtgaaaatttccttggaagtgcaagg 22525472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 107 - 258
Target Start/End: Original strand, 18581952 - 18582102
Alignment:
Q  107 ttcttacaaactttcaat-cttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaa 205  Q
    |||||||||||||| | | |||| |||||||||||| |||| ||||||||||||||| ||||| || |||| |||||||||||||||| |||||| ||||    
T  18581952 ttcttacaaacttttatttcttagaatttcttaagt-ctcagaagtcatatgaacttaaatttcct-acacgtctaattgtatatcaattgtaaaaacaa 18582049  T
Q  206 tcttatttatttgtttaactctgattgtagaagtctcttacttgtgtgtttga 258  Q
    ||||||||||||||  |||| || ||||||||||||||| |||||||| ||||    
T  18582050 tcttatttatttgtaaaactttgtttgtagaagtctctttcttgtgtgattga 18582102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 50 - 259
Target Start/End: Complemental strand, 25517344 - 25517125
Alignment:
Q  50 aagacttctatcattttacaagtgctcttactctgtcgaattatatagcgcacaaagt-----------tcttacaaactttca-atcttaaaatttctt 137  Q
    ||||||||||||||||||||||||   |||||||||||||| ||||| |||||||| |           ||||||||||||||| |||||| ||||||||    
T  25517344 aagacttctatcattttacaagtgtctttactctgtcgaataatataacgcacaaactcttagagaaattcttacaaactttcatatcttagaatttctt 25517245  T
Q  138 aagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaatcttatttatttgtttaactctgattgtagaa 237  Q
    ||||| | | ||||||||||||||| ||||| ||||||| ||| |||||||||||| |||||| ||||||||||||||||||| || | | |||||||||    
T  25517244 aagtatt-agaagtcatatgaacttaaattt-cttacacatctgattgtatatcaactgtaaagacaatcttatttatttgttaaattattattgtagaa 25517147  T
Q  238 gtctcttacttgtgtgtttgag 259  Q
     |||  | |||||||| |||||    
T  25517146 ttcttcttcttgtgtgattgag 25517125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 130 - 253
Target Start/End: Complemental strand, 10656113 - 10655991
Alignment:
Q  130 aatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaa-cacaatcttatttatttgtttaactctg 228  Q
    ||||||||||||| ||| ||||||||| | ||| ||||| ||||||||||  ||||||||||||||||||| ||||||||| |||||||||| |||||||    
T  10656113 aatttcttaagta-tcagaagtcatataagcttaaattt-cttacacctcagattgtatatcaagtgtaaaacacaatcttgtttatttgttaaactctg 10656016  T
Q  229 attgtagaagtctcttacttgtgtg 253  Q
    |||| ||||||||||| || |||||    
T  10656015 attgcagaagtctctttctcgtgtg 10655991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 240
Target Start/End: Original strand, 26858617 - 26858748
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaat 206  Q
    |||||||||||||| ||||||| ||||||||||||  | | ||||||  || ||||||| ||  ||| || ||||||||||||||||||||||| |||||    
T  26858617 ttcttacaaacttttaatcttagaatttcttaagtgtttagaagtcacttgcactttaagttaattatacttctaattgtatatcaagtgtaaaaacaat 26858716  T
Q  207 cttatttatttgtttaactctgattgtagaagtc 240  Q
    ||  |||||||| | |||||||||||||||||||    
T  26858717 ct--tttatttgataaactctgattgtagaagtc 26858748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 1896232 - 1896179
Alignment:
Q  187 atatcaagtgtaaacacaatcttatttatttgtttaactctgattgtagaagtc 240  Q
    ||||||||||||||||||||||  |||||||||| || |||||||||| |||||    
T  1896232 atatcaagtgtaaacacaatctcttttatttgttaaaatctgattgtaaaagtc 1896179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 414
Target Start/End: Original strand, 26858807 - 26858899
Alignment:
Q  322 gtgattatagtgaaaaattccttggaagtacaaggggactggactactctcaaattgtgagaggaacatgtataatttgcttgtgtcgtctct 414  Q
    ||||||||||||||||||   |||||||| ||||||||||| ||||  ||  ||||||||| |||||    ||||||||||| ||||||||||    
T  26858807 gtgattatagtgaaaaatcttttggaagtgcaaggggactgaactaaccttgaattgtgaggggaaccaagataatttgcttatgtcgtctct 26858899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 10649892 - 10649930
Alignment:
Q  103 aaagttcttacaaactttcaatcttaaaatttcttaagt 141  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  10649892 aaagtccttacaaactttcaatcttagaatttcttaagt 10649930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 12669823 - 12669856
Alignment:
Q  336 aaattccttggaagtacaaggggactggactact 369  Q
    ||||||||||||||| ||||||||||||||||||    
T  12669823 aaattccttggaagtgcaaggggactggactact 12669856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 21721490 - 21721519
Alignment:
Q  171 ttacacctctaattgtatatcaagtgtaaa 200  Q
    ||||||||||||||||||||||||||||||    
T  21721490 ttacacctctaattgtatatcaagtgtaaa 21721519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 373
Target Start/End: Original strand, 43283288 - 43283325
Alignment:
Q  336 aaattccttggaagtacaaggggactggactactctca 373  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  43283288 aaattccttggaagtacaagaggactagactactctca 43283325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 34487789 - 34487729
Alignment:
Q  307 aaattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggacta 367  Q
    |||||||| ||||| |||||||||||||||| | | | |||||| ||||| ||||||||||    
T  34487789 aaattgtaatcttgtgtgattatagtgaaaattccatgggaagtgcaaggagactggacta 34487729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 240
Target Start/End: Complemental strand, 14116524 - 14116392
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaat 206  Q
    |||||||||||||||||||||| ||||| ||||||  | | ||||||  |  ||||||| ||| |||||||||| |||||||||||||||||| ||||||    
T  14116524 ttcttacaaactttcaatcttagaattttttaagtgtttagaagtcacttatactttaagtttattacacctctgattgtatatcaagtgtaagcacaat 14116425  T
Q  207 cttatttatttgtttaactctgattgtagaagtc 240  Q
    | |||||||||||| |||||| ||||||||||||    
T  14116424 c-tatttatttgttaaactctaattgtagaagtc 14116392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 107 - 259
Target Start/End: Complemental strand, 11434675 - 11434522
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgt--aaacaca 204  Q
    ||||||||||||||| | | ||||||||  |||||  ||||||||||  ||  |||||| |||||||||| | | ||||||||||||||||  |||||||    
T  11434675 ttcttacaaactttcgaccataaaattttctaagtgttcaaaagtcacttgccctttaagtttcttacacatgtgattgtatatcaagtgtgtaaacaca 11434576  T
Q  205 atcttatttatttgtttaactctgattgtagaagtctcttacttgtgtgtttgag 259  Q
    |||||||||||||||| ||||||||||  | |||||||||| |||||||||||||    
T  11434575 atcttatttatttgttaaactctgattaaaaaagtctctta-ttgtgtgtttgag 11434522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 252
Target Start/End: Complemental strand, 8189826 - 8189683
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaat 206  Q
    ||||| |||||||| ||||| | ||||||||||||  ||| ||||||  || ||||||| |||||||||| | | |||||||  ||||||| ||||||||    
T  8189826 ttcttccaaactttaaatctcataatttcttaagtgttcataagtcacttgcactttaagtttcttacacatatgattgtat--caagtgtcaacacaat 8189729  T
Q  207 cttatttatttgtttaactctgattgtagaagtctcttacttgtgt 252  Q
    || ||||||||||| |||| ||||| ||||||| ||||||||||||    
T  8189728 ctcatttatttgttaaactttgattttagaagtttcttacttgtgt 8189683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 414
Target Start/End: Complemental strand, 8501948 - 8501840
Alignment:
Q  305 gcaaattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggactactctcaaattgtgagaggaacatgtataatttgcttg 404  Q
    |||||||||| ||| | | ||||||||| ||||||||||||||||| ||||||| |||||||||||||   ||||||||||||   ||||||||| ||||    
T  8501948 gcaaattgtaatctagtgagattatagt-aaaaattccttggaagtgcaaggggtctggactactctcggtttgtgagaggaatcagtataattttcttg 8501850  T
Q  405 tgtcgtctct 414  Q
    ||||||||||    
T  8501849 tgtcgtctct 8501840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 240
Target Start/End: Complemental strand, 11442178 - 11442045
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaat 206  Q
    |||||||||||||| || |||| ||||| ||||||  ||| ||||||  || ||||||  ||| ||| |||||| |||||||||||||| |||| ||| |    
T  11442178 ttcttacaaactttgaaccttagaattttttaagtgttcagaagtcacttgcactttaggttttttatacctctgattgtatatcaagtttaaagacagt 11442079  T
Q  207 cttatttatttgtttaactctgattgtagaagtc 240  Q
    | |||||||||||| |||||| ||||||||||||    
T  11442078 cgtatttatttgttaaactcttattgtagaagtc 11442045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 240
Target Start/End: Original strand, 11551517 - 11551650
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaat 206  Q
    |||||||||||||| || |||| ||||| ||||||  ||| ||||||  || ||||||  ||| ||| |||||| |||||||||||||| |||| ||| |    
T  11551517 ttcttacaaactttgaaccttagaattttttaagtgttcagaagtcacttgcactttaggttttttatacctctgattgtatatcaagtttaaagacagt 11551616  T
Q  207 cttatttatttgtttaactctgattgtagaagtc 240  Q
    | |||||||||||| |||||| ||||||||||||    
T  11551617 cgtatttatttgttaaactcttattgtagaagtc 11551650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 13929426 - 13929547
Alignment:
Q  118 tttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaatcttatttattt 217  Q
    ||||||||||| ||||||||||||  ||| |||||   |   |||||| || ||||||||||| |||||||||||||| ||||||||||||| |||||||    
T  13929426 tttcaatcttagaatttcttaagtgttcagaagtcgctttctctttaagttacttacacctctgattgtatatcaagtataaacacaatctt-tttattt 13929524  T
Q  218 gtttaactctgattgtagaagtc 240  Q
    | |  || || ||||||||||||    
T  13929525 gatacacactaattgtagaagtc 13929547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 371
Target Start/End: Complemental strand, 19052797 - 19052736
Alignment:
Q  308 aattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggactactct 371  Q
    ||||||| ||||| |||||||||||||||  | |||||||||| ||||||||||||||||||||    
T  19052797 aattgtaatcttgtgtgattatagtgaaa--tcccttggaagtgcaaggggactggactactct 19052736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 408
Target Start/End: Complemental strand, 43357775 - 43357692
Alignment:
Q  324 gattatagtgaaaaattccttggaagtacaaggggactggactactctcaaattgtgagaggaacatgtataatttgcttgtgtc 408  Q
    |||||||||||||| ||| |||||||| ||||  || |||||||||||| |  ||||||||||||  ||||||||||||||||||    
T  43357775 gattatagtgaaaa-ttctttggaagtgcaagttgattggactactctcgatctgtgagaggaactagtataatttgcttgtgtc 43357692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 259
Target Start/End: Complemental strand, 17133671 - 17133460
Alignment:
Q  60 tcattttacaagtgctcttactctgtcgaattatatagcgcaca-----------aagttcttacaaactttca-atcttaaaatttcttaagtactcaa 147  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||||           || |||||||||||||| | | |||| ||||||||||||| |||     
T  17133671 tcattttacaagtactcttactctgtcaaattatatagctcacaaacacttggagaaattcttacaaactttaataacttagaatttcttaagta-tcag 17133573  T
Q  148 aagtcatatgaactttaattttcttacacctctaattgtatatcaagtgt-aaacacaatcttatttatttg-tttaactctgattgtagaagtctctta 245  Q
    ||||||||||||| ||||  ||| ||||||| | |||||||||||| ||| |||  |||| |  |||||||| || ||||  |||||||||||||||||     
T  17133572 aagtcatatgaac-ttaaacttcgtacacctgtgattgtatatcaattgtaaaatgcaatatcttttatttgattaaacttagattgtagaagtctcttt 17133474  T
Q  246 cttgtgtgtttgag 259  Q
     ||||||| |||||    
T  17133473 tttgtgtgattgag 17133460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 15193254 - 15193192
Alignment:
Q  308 aattgtagtcttgcgtgattatagtgaaaaattccttggaagt-acaaggggactggactact 369  Q
    ||||||| ||||| ||||||||||| ||||||| |||| |||| |||||||||||||||||||    
T  15193254 aattgtaatcttgtgtgattatagtaaaaaatttcttgtaagtgacaaggggactggactact 15193192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 17133429 - 17133366
Alignment:
Q  307 aaattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggactactct 371  Q
    |||||||| ||||| ||||||| |||||||| ||| ||| |||| ||||||||||||||||||||    
T  17133429 aaattgtaatcttgtgtgattacagtgaaaa-ttcattgaaagtgcaaggggactggactactct 17133366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 13977934 - 13977998
Alignment:
Q  322 gtgattatagtgaaaaattccttggaagtacaaggggactggactactctcaaattgtgagaggaac 388  Q
    |||||||||||||||| ||||||| |||| |||||||||| ||||||||||   |||||||||||||    
T  13977934 gtgattatagtgaaaa-ttccttg-aagtgcaaggggactagactactctcggtttgtgagaggaac 13977998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 14116349 - 14116288
Alignment:
Q  307 aaattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggactac 368  Q
    |||||||| ||||| ||||||||||||||| || | |||||||| |||||| |||| |||||    
T  14116349 aaattgtaatcttgtgtgattatagtgaaatatccattggaagtgcaagggaactgaactac 14116288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 253
Target Start/End: Complemental strand, 43357972 - 43357829
Alignment:
Q  110 ttacaaactttca-atcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaa-cacaatc 207  Q
    ||||||||||| | || ||| ||||||||||||| ||| ||||||| ||||||| || || |||||| || | |||||||||||| |||||| ||  |||    
T  43357972 ttacaaacttttatattttagaatttcttaagta-tcagaagtcatttgaacttaaactt-cttacaactatgattgtatatcaattgtaaatcatgatc 43357875  T
Q  208 ttatttatttgtttaactctgattgtagaagtctcttacttgtgtg 253  Q
    |  | |||||||| |||| |||||||| |||| |||| ||||||||    
T  43357874 tcttctatttgttaaactttgattgtacaagtatcttccttgtgtg 43357829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 39981240 - 39981285
Alignment:
Q  323 tgattatagtgaaaaattccttggaagtacaaggggactggactactc 370  Q
    ||||||||||||||  |||||||||||| |||| ||||||||||||||    
T  39981240 tgattatagtgaaa--ttccttggaagtgcaagtggactggactactc 39981285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 252
Target Start/End: Complemental strand, 16401 - 16258
Alignment:
Q  107 ttcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaat 206  Q
    ||||| |||||||| ||||| | ||||||||||||  ||| ||||||  || ||||||| |||||||||| | | |||||||  ||||||| ||||||||    
T  16401 ttcttccaaactttaaatctcataatttcttaagtgttcataagtcacttgcactttaagtttcttacacatatgattgtat--caagtgtcaacacaat 16304  T
Q  207 cttatttatttgtttaactctgattgtagaagtctcttacttgtgt 252  Q
    || ||||||||||| |||| ||||| ||||||| ||||||||||||    
T  16303 ctcatttatttgttaaactttgattttagaagtttcttacttgtgt 16258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 19761364 - 19761234
Alignment:
Q  108 tcttacaaactttcaatcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaatc 207  Q
    |||||||||| |||||||||||||||||||||||  | | ||||||  |||||||| | ||  |||||| ||| ||||||||||||||||||||||||||    
T  19761364 tcttacaaacattcaatcttaaaatttcttaagtctttagaagtcacttgaactttgagttaattacacttctgattgtatatcaagtgtaaacacaatc 19761265  T
Q  208 ttatttatttgtttaactctgattgtagaagtc 240  Q
    |  ||||||||   |||||||| ||||||||||    
T  19761264 t--tttatttgcaaaactctgactgtagaagtc 19761234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 414
Target Start/End: Complemental strand, 19761192 - 19761083
Alignment:
Q  305 gcaaattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggactactctcaaattgtgagaggaacatgtataatttgcttg 404  Q
    |||| ||||| ||||  ||||||||||||||||||  |||| |||| |||||||| |||||||  ||||||||||||| | |||  | |||||||| |||    
T  19761192 gcaagttgtaatcttatgtgattatagtgaaaaatcacttgaaagtgcaaggggaatggactaacctcaaattgtgagggaaaccaggataatttgtttg 19761093  T
Q  405 tgtcgtctct 414  Q
    ||||||||||    
T  19761092 tgtcgtctct 19761083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 9829514 - 9829613
Alignment:
Q  107 ttcttacaaactttca-atcttaaaatttcttaagtactcaaaagtcatatgaactttaattttcttacacctctaattgtatatcaagtgtaaacacaa 205  Q
    |||||||||| ||||| |||||| ||||||||||||| ||| ||||||| ||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  9829514 ttcttacaaa-tttcatatcttagaatttcttaagtattcagaagtcat-tgaacttaaattta-ttacacctctaattgtatatcaagtgtaaacacaa 9829610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 369
Target Start/End: Original strand, 12412257 - 12412320
Alignment:
Q  307 aaattgtagtcttgcgtgattatagtgaaaaattccttggaagt-acaaggggactggactact 369  Q
    |||||||| ||||||||||||||||||||||||  |||| || | |||||||||||||||||||    
T  12412257 aaattgtaatcttgcgtgattatagtgaaaaatctcttgtaattaacaaggggactggactact 12412320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 24097711 - 24097759
Alignment:
Q  57 ctatcattttacaagtgctcttactctgtcgaattatatagcgcacaaa 105  Q
    |||||||||||||||||| |||||| | || ||||||||||||||||||    
T  24097711 ctatcattttacaagtgcccttactttatcaaattatatagcgcacaaa 24097759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 373
Target Start/End: Complemental strand, 27685581 - 27685514
Alignment:
Q  305 gcaaattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggactactctca 373  Q
    |||||||||| || || |||||||||||||||| |||||| ||||| |||| ||||| |||||||||||    
T  27685581 gcaaattgtaatcctgtgtgattatagtgaaaa-ttccttagaagtgcaagaggactagactactctca 27685514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 4507859 - 4507767
Alignment:
Q  170 cttacacctctaattgtatatcaagtgtaaa---cacaatcttatttatttgtttaactctgattgtagaagtctcttacttgtgtgtttgag 259  Q
    ||||||||||| |||||| ||||||||||||   || ||  |  |||||||| |||| |  |||||||||||||||||||| |||||||||||    
T  4507859 cttacacctctgattgtacatcaagtgtaaatcacataaaatcttttatttgattaagttcgattgtagaagtctcttactagtgtgtttgag 4507767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 24112348 - 24112314
Alignment:
Q  167 tttcttacacctctaattgtatatcaagtgtaaac 201  Q
    ||||||||||||||||||||||||| |||||||||    
T  24112348 tttcttacacctctaattgtatatctagtgtaaac 24112314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 12759138 - 12759109
Alignment:
Q  171 ttacacctctaattgtatatcaagtgtaaa 200  Q
    ||||||||||||||||||||||||||||||    
T  12759138 ttacacctctaattgtatatcaagtgtaaa 12759109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 398
Target Start/End: Complemental strand, 19905349 - 19905297
Alignment:
Q  346 gaagtacaaggggactggactactctcaaattgtgagaggaacatgtataatt 398  Q
    |||||||||||||||||||||||||  | |||||  ||||||| |||||||||    
T  19905349 gaagtacaaggggactggactactcatagattgtaggaggaacctgtataatt 19905297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 89535 - 89629
Alignment:
Q  167 tttcttacacctctaattgtatatcaagtgtaaac--acaatcttatttatttgtttaa-ctctgattgtagaagtctcttacttgtgtgtttgag 259  Q
    ||||||||| |||| |||| |||| |||||||||   |||||||| |||||||| |||| ||||||||||||||||||||| |||||||| |||||    
T  89535 tttcttacaactctgattgcatattaagtgtaaaacaacaatctt-tttatttgattaaactctgattgtagaagtctctttcttgtgtgattgag 89629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 89408 - 89463
Alignment:
Q  50 aagacttctatcattttacaagtgctcttactctgtcgaattatatagcgcacaaa 105  Q
    ||||||||  ||||||||||||||| |||||| |||| ||||| ||||||||||||    
T  89408 aagacttccgtcattttacaagtgcccttactttgtcaaattaaatagcgcacaaa 89463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 9851 - 9913
Alignment:
Q  305 gcaaattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggacta 367  Q
    ||||| |||| | ||| |||||||||||||||||| | |||||||| ||||||||||||||||    
T  9851 gcaaactgtaatattgtgtgattatagtgaaaaatccattggaagtgcaaggggactggacta 9913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 20244 - 20306
Alignment:
Q  305 gcaaattgtagtcttgcgtgattatagtgaaaaattccttggaagtacaaggggactggacta 367  Q
    ||||| |||| | ||| |||||||||||||||||||| |||| ||| |||||||||| |||||    
T  20244 gcaaactgtaatattgtgtgattatagtgaaaaattcattggtagtgcaaggggactcgacta 20306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 7090 - 7171
Alignment:
Q  162 ttaattttcttacacctctaattgtatatcaagtgt-aaacacaatcttatttatttg-tttaactctgattgtagaagtct 241  Q
    ||||| ||||||||||| ||||| |||||||||||| |||||||||||  |||||||| || ||||  ||||||||||||||    
T  7090 ttaatcttcttacacctttaattatatatcaagtgtaaaacacaatctcttttatttgattaaacttagattgtagaagtct 7171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 369
Target Start/End: Complemental strand, 14757840 - 14757779
Alignment:
Q  310 ttgtagtcttgcgtgattatagtgaaaaat-tccttggaagtacaa-ggggactggactact 369  Q
    ||||| ||||| |||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  14757840 ttgtaatcttgtgtgattatagtgaaaaatctccttggaagtgcaagggggactggactact 14757779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 15478450 - 15478495
Alignment:
Q  324 gattatagtgaaaaattccttggaagtacaaggggactggactact 369  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||||    
T  15478450 gattatagtgaaaatctccttggaagtgcaaggggactggactact 15478495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 370
Target Start/End: Complemental strand, 20395735 - 20395700
Alignment:
Q  335 aaaattccttggaagtacaaggggactggactactc 370  Q
    |||||||||||||||| |||||||||||||||||||    
T  20395735 aaaattccttggaagtgcaaggggactggactactc 20395700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 34659424 - 34659377
Alignment:
Q  322 gtgattatagtgaaaaattccttggaagtacaaggggactggactactct 371  Q
    |||||||||||||||  | |||| ||||||||||||||||||||||||||    
T  34659424 gtgattatagtgaaa--tcccttagaagtacaaggggactggactactct 34659377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 141
Target Start/End: Original strand, 12870485 - 12870514
Alignment:
Q  112 acaaactttcaatcttaaaatttcttaagt 141  Q
    ||||||||||||||||||||||||||||||    
T  12870485 acaaactttcaatcttaaaatttcttaagt 12870514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1328 times since January 2019
Visitors: 3844