View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_47 (Length: 431)
Name: NF0583_low_47
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53033198 - 53032977
Alignment:
| Q |
1 |
tctcccactgtttctccagttatctaaattaaccaactaatcatacttaattaattaattcaactaaaaatacacatttaatcgttgtagtagtattgta |
100 |
Q |
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| T |
53033198 |
tctcccactgtttctccagttatctaaattaaccaactaatcatacttaattaattaattcaactaaaaatacacatttaatcgttgtagtagtattgta |
53033099 |
T |
|
| Q |
101 |
aaatccaaatatatatactagtggtagtgattaaagtacgtacctctcttagcataagtgtctttggaatgactctacataagaaaggaggaagaatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53033098 |
taatccaaatatatatactagtggtagtgattaaagtacgtacctctcttagcataagtgtctttggaatgactctacataagaaagtaggaagaatcat |
53032999 |
T |
|
| Q |
201 |
gaacacaaaatctatacatata |
222 |
Q |
| |
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|| |||||||| |||||||||| |
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| T |
53032998 |
gagcacaaaatgtatacatata |
53032977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 53032960 - 53032848
Alignment:
| Q |
213 |
tatacatatagatagaagaataaggaattgaagaaaaagaaaggagggtaccctaagacgtggcgtccaccatcatagacaacttgtgagatacgaccca |
312 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53032960 |
tatatatatagatagaagaataaggaattgaagaaaaagaaaggagggtaccctaagacgtggcgtccaccatcatagacaacttgtgagatacgaccca |
53032861 |
T |
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| Q |
313 |
tcaatcctatgct |
325 |
Q |
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||||||||||||| |
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| T |
53032860 |
tcaatcctatgct |
53032848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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