View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_5 (Length: 800)

Name: NF0583_low_5
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_5
NF0583_low_5
[»] chr5 (1 HSPs)
chr5 (10-758)||(5216779-5217509)


Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 10 - 758
Target Start/End: Complemental strand, 5217509 - 5216779
Alignment:
Q  10 aataatatcccatacttgtttgcactatcaacctgtatatattgtcggcaacattcaatacaattctcattataattaaataaatgttactctttttcat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  5217509 aataatatcccatacttgtttgcactatcaacctgtatatattgtcggcaacattcaagaccattctcattataattaaataaatgttactctttttcat 5217410  T
Q  110 aagaaaagtcaaaatgctttggttactagtaacttatggttactaacttctttagcaacnnnnnnnnnnnnnnatgatagaaaaacccataatatattat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||     
T  5217409 aagaaaagtcaaaatgctttggttactagtaacttatggttactaacttctttagcaacttttttttttttt-atgatagaaaaacccataatatattac 5217311  T
Q  210 gtcataacactgacatttctaatgaaaaacgtctttggtgtccaccgcttctgataagtacaacatgacactgtcacaaataactatattaaatatatat 309  Q
    ||||||||||| ||||||||  |||||||||||||||||||||| |||||                 |||| |||||| ||||||||||||| |||||||    
T  5217310 gtcataacactaacatttctgttgaaaaacgtctttggtgtccaacgctt-----------------acaccgtcacagataactatattaagtatatat 5217228  T
Q  310 ttgatattacgatggttatatctgaatcaaaatgatttgtcgtgaatttaaacataaactaaaatgatgtgcggtgatcttaaacaaaaactaaatagtg 409  Q
    ||| ||| ||||| ||||||||||||||||| |||||||||||||| |||||||||| |||||||||| ||| ||||||||||||| ||  |||||||||    
T  5217227 ttggtatcacgatagttatatctgaatcaaagtgatttgtcgtgaacttaaacataagctaaaatgatctgcagtgatcttaaacataagttaaatagtg 5217128  T
Q  410 ttattttttaaaattactatcggtgtcaatgtcgtatctggtgttccgtaggtttctgtacttcatatgtcttccaatttctaaactggtgtgtcctttt 509  Q
    ||||||| |||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5217127 ttattttctaaaattactatgggtgtcgatgtcgtatctgatgttccgtaggtttctgtacttcatatgccttccaatttctaaactggtgtgtcctttt 5217028  T
Q  510 ttggtacattttatgaataaaccgactctaatatgataacaggatgacgtcattttcagagaatacctaccaaattaaatgtctagatacataagaggca 609  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5217027 ttggtacattttatgaataaaccgactctaatttgataacaggatgacgtcattttcagagaatacctaccaaattaaatgtctatatacataagaggca 5216928  T
Q  610 tgatttattttgaagtttgcaaggtcactacaaaacaagacataaggaattaaataaattagagaattgtatcgaaccttcacaacagtgcagtctttac 709  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5216927 tgatttattttgaactttgcaaggtcactacaaaacaagacataaggaattaaataaattagagaattgtatcgaaccttcacaacagtgcagtctttac 5216828  T
Q  710 aagtattattatctatacaaaccctgccaattaacagaaaattaattac 758  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5216827 aagtattattatctatacaaaccctgccaattaacagaaaattaattac 5216779  T

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