View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_53 (Length: 419)
Name: NF0583_low_53
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 415
Target Start/End: Complemental strand, 32326272 - 32325886
Alignment:
| Q |
30 |
aacttatcaacccaaagaggttttgtgacaaaattgaaatctgggttcaaagaagcacttttccctgatgatccttttaggcaaattatggaagaggnnn |
129 |
Q |
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| T |
32326272 |
aacttatcaacccaaagaggttttgtgacaaaattgaaatctgggttcaaagaagcacttttccctgatgatccttttaggcaaattatggaagaggaaa |
32326173 |
T |
|
| Q |
130 |
nnnn-tctcgtaggttgattaaaggggtgcaatattttattccaatctttgagtggttaccaaattattctttgagattatttttctctgacttaattgc |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32326172 |
aaaaatctcgtaggttgattaaaggggtgcaatattttattccaatctttgagtggttaccaaattattctttgagattatttttctctgacttaattgc |
32326073 |
T |
|
| Q |
229 |
tggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctgatcttcctcctctcattggcctttgtaagtcattcttatca |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
32326072 |
tggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctaatcttcctcctctcattggcctttgtaagtcattcttatta |
32325973 |
T |
|
| Q |
329 |
ttacattacatgcattcttaattacttcggnnnnnnnncttctgcgcgcaatggcagagattatcacttcaatttttcatctcactc |
415 |
Q |
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||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
32325972 |
ttacattacattcattcttaattacttcggttttttttcttcttcgcgcaattgcagagattatcacttcaatttttcatttcactc |
32325886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 38221283 - 38221210
Alignment:
| Q |
224 |
attgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctgatcttcctcc |
297 |
Q |
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| T |
38221283 |
attgctgggatcaccattgctagtttggctattcctcaaggcattagttatgcaaagcttgctaaccttcctcc |
38221210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 285
Target Start/End: Original strand, 31744641 - 31744672
Alignment:
| Q |
254 |
attcctcaaggcattagttatgccaaacttgc |
285 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31744641 |
attcctcaaggcattagttatgccaaacttgc |
31744672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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