View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_54 (Length: 418)

Name: NF0583_low_54
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_54
NF0583_low_54
[»] chr3 (5 HSPs)
chr3 (92-413)||(31424345-31424666)
chr3 (214-402)||(24712760-24712951)
chr3 (108-332)||(823097-823325)
chr3 (295-332)||(4637266-4637303)
chr3 (141-240)||(53279643-53279742)
[»] chr8 (4 HSPs)
chr8 (169-396)||(17819533-17819758)
chr8 (168-257)||(31503088-31503177)
chr8 (111-180)||(5221506-5221576)
chr8 (114-154)||(25184827-25184867)
[»] chr4 (2 HSPs)
chr4 (113-402)||(48567302-48567591)
chr4 (175-362)||(23440152-23440344)
[»] chr1 (5 HSPs)
chr1 (118-402)||(9613087-9613371)
chr1 (149-402)||(9081208-9081465)
chr1 (190-247)||(22200277-22200334)
chr1 (190-247)||(22235189-22235246)
chr1 (111-159)||(27905761-27905809)
[»] chr2 (6 HSPs)
chr2 (109-252)||(1946042-1946186)
chr2 (129-247)||(1945841-1945960)
chr2 (143-384)||(15817096-15817334)
chr2 (214-251)||(11199759-11199796)
chr2 (295-334)||(30598963-30599002)
chr2 (108-136)||(27740341-27740369)
[»] chr7 (4 HSPs)
chr7 (168-310)||(15126823-15126964)
chr7 (190-249)||(2613623-2613682)
chr7 (218-313)||(1819780-1819873)
chr7 (297-334)||(26386030-26386067)
[»] chr5 (1 HSPs)
chr5 (107-251)||(26367678-26367823)
[»] chr6 (4 HSPs)
chr6 (109-332)||(5746790-5747015)
chr6 (175-402)||(32316490-32316713)
chr6 (190-249)||(21029892-21029952)
chr6 (208-309)||(4554320-4554420)
[»] scaffold0127 (1 HSPs)
scaffold0127 (209-330)||(21349-21470)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 92 - 413
Target Start/End: Complemental strand, 31424666 - 31424345
Alignment:
Q  92 atcagaggttacatgataaaggcgtcgtatataggtggaacacccaaatgaaacaccataaaatacacaaaacaatcatcacctaaccaagatctacttt 191  Q
    ||||||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31424666 atcagaggttacatgataaagacgtcgtatataggcggaacatccaaattaaacaccataaaatacacaaaacaatcatcacctaaccaagatctacttt 31424567  T
Q  192 caacacccaaaagaacaacaatcaccaaaaccaacttcaccacctaaatcaaactccatcacaaacagccattgaacacgaaatccatacaccacccttc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  31424566 caacacccaaaagaacaacaatcaccaaaaccaacttcaccacctaaatcaaactccatcataaacagccattgaacacgaaatccatacaccccccttc 31424467  T
Q  292 gctcgctactcaccccaaaaaacacccctctaaatcaaacaacaccttatcttcaccttagttgagccacatccaaaaatgtcatattccaacccttagt 391  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  31424466 gctcgctactcaccccaaaaaacacccctctaaatcaaccaacaccttatcatcaccttagttgagccacatccaaaaatgtcctattccaacgcttagt 31424367  T
Q  392 cggcctccacctctctgctcct 413  Q
    |||||||||||||||| |||||    
T  31424366 cggcctccacctctctactcct 31424345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 402
Target Start/End: Complemental strand, 24712951 - 24712760
Alignment:
Q  214 caccaaaaccaacttcaccacctaaatcaaactccatcacaaacagccattgaacacgaaatccatacaccacccttcgctcgctactcacccc----aa 309  Q
    |||| |||||||||| |||||||||| ||||||||||| | |||   || |||| |||||||||||| |||  | |||||||||| |||||| |    ||    
T  24712951 cacctaaaccaactttaccacctaaaacaaactccatcgcgaacgatcactgaaaacgaaatccatagacc-tcattcgctcgctgctcaccacaaaaaa 24712853  T
Q  310 aaaacacccctctaaatcaaacaacaccttatcttcaccttagttgagccacatccaaaaatgtcatattccaacccttagtcggcctccacc 402  Q
    |||| ||| ||||||||||||| ||   ||  | ||||||| | ||||||||| || |||||| ||||||||||  |||||||||||||||||    
T  24712852 aaaaaacctctctaaatcaaaccaccttttcccatcacctttgctgagccacacccgaaaatgacatattccaatgcttagtcggcctccacc 24712760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 332
Target Start/End: Original strand, 823097 - 823325
Alignment:
Q  108 taaaggcgtcgtatataggtggaacacccaaatgaaacaccataaaat-acacaaa-acaatcatcacctaaccaagatctactttcaacacccaaaaga 205  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||||  ||||    |||  || | ||||| |||   |||| |||||||||||  ||     
T  823097 taaaggcgtcgtatataaggggaacacccaaattaaacaccataaaaagacacccttacacacaacccctaatcaacccctaccttcaacacccatgagg 823196  T
Q  206 acaacaatcaccaaaaccaacttcaccacctaaatcaaactccatcac-aaacagccattg-aacacgaaatccatacaccacccttcgctcgctactca 303  Q
    ||| ||  ||||||||  |||||||||||||||| ||||||||||||| ||||| ||| || || |||| ||||||| |||||||||||| | |||||||    
T  823197 acatcacccaccaaaattaacttcaccacctaaaacaaactccatcacaaaacaaccactgaaaaacgatatccata-accacccttcgc-ctctactca 823294  T
Q  304 ccccaaa--aaacacccctctaaatcaaaca 332  Q
    ||| |||  ||||||| |||||| |||||||    
T  823295 ccctaaaagaaacacctctctaattcaaaca 823325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 4637266 - 4637303
Alignment:
Q  295 cgctactcaccccaaaaaacacccctctaaatcaaaca 332  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  4637266 cgctactcactccacaaaacacccctctaaatcaaaca 4637303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 53279742 - 53279643
Alignment:
Q  141 gaaacaccataaaatacac-aaaacaatcatcacctaaccaagatctactttcaacacccaaaagaacaacaatcaccaaaaccaacttcaccacctaaa 239  Q
    |||||| ||||||| |||| ||||||  || |||||||||||||||||| |||||||| || ||||| || || |  ||| ||||||||||||||| |||    
T  53279742 gaaacatcataaaaaacactaaaacacacaccacctaaccaagatctaccttcaacactcataagaa-aataaccttcaagaccaacttcaccacccaaa 53279644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 169 - 396
Target Start/End: Original strand, 17819533 - 17819758
Alignment:
Q  169 atcacctaaccaagatctactttcaacacccaaaagaacaacaatcaccaaaaccaacttcaccacctaaatcaaactccatcacaaacagccattgaac 268  Q
    ||||||||||||| | |||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| ||| ||||     
T  17819533 atcacctaaccaaaacctaccttcaacacccataagaaca-caaccaccaaaaccaacttcaccacctaaatcaaactccatcgcaaacaaccactgaaa 17819631  T
Q  269 acgaaatccatacaccacccttcgctcgctactcaccccaaaaaacacccctctaaatcaaacaacaccttatcttcaccttagttgagccacatccaaa 368  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||| || |||||||||||||||||  ||| || ||||||||| ||||||| | |||||    
T  17819632 acgaaatccataaacc-cccttcgctcgctgctcaccccaaaaaaaactcctctaaatcaaacaacctcttctcgtcaccttagctgagccatacccaaa 17819730  T
Q  369 aatgtcatattccaacccttagtcggcc 396  Q
    |||| |||||| |||  |||||||||||    
T  17819731 aatgacatatttcaatgcttagtcggcc 17819758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 31503088 - 31503177
Alignment:
Q  168 catcacctaaccaagatctactttcaacacccaaaagaacaacaatcaccaaaaccaacttcaccacctaaatcaaactccatcacaaac 257  Q
    |||||| || |||||| |||| |||||||| ||  ||||||| || |||||||||||||||| ||||||||||||||||||||| |||||    
T  31503088 catcacatacccaagacctaccttcaacacgcatgagaacaagaaccaccaaaaccaacttcgccacctaaatcaaactccatcgcaaac 31503177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 5221506 - 5221576
Alignment:
Q  111 aggcgtcgtatataggtggaacacccaaatgaaacaccataaaatac-acaaaacaatcatcacctaacca 180  Q
    ||||| |||||||||| |||||||||||| ||||||||| |||| || ||||||||  || ||||||||||    
T  5221506 aggcgccgtatataggcggaacacccaaaagaaacaccaaaaaagacaacaaaacacacaccacctaacca 5221576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 25184827 - 25184867
Alignment:
Q  114 cgtcgtatataggtggaacacccaaatgaaacaccataaaa 154  Q
    ||||||||||||||||||||||| ||  |||||||||||||    
T  25184827 cgtcgtatataggtggaacacccgaagtaaacaccataaaa 25184867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 113 - 402
Target Start/End: Original strand, 48567302 - 48567591
Alignment:
Q  113 gcgtcgtatataggtggaacacccaaatgaaacaccataaaatacacaaaacaatcatcacctaaccaagatctactttcaacacccaaa-agaacaaca 211  Q
    |||||||||||||| |||||||| |||   |||||||||||| |||  |||||  ||||||||||||||||||||| || |||||| ||| |||||||||    
T  48567302 gcgtcgtatataggcggaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaagatctacctt-aacacctaaagagaacaaca 48567400  T
Q  212 atcaccaaaaccaacttcaccacctaaatcaaactccatca-caaacagccattgaacacgaaatccatacaccacccttcgctcgctactcaccccaaa 310  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||| || | |||| |||||||||||| ||| || |||||||||| |||||||||||    
T  48567401 atcaccaaaaccaacttcaccacctaaatcaaacttcatcattaaacggcaactgaaaacgaaatccataaacc-cctttcgctcgctgctcaccccaaa 48567499  T
Q  311 aaacacccctctaaatcaaacaacaccttatcttcaccttagttgagccacatccaaaaatgtcatattccaacccttagtcggcctccacc 402  Q
    ||||| |||||||||||| |||||  ||| || |||||| |  ||||||  || |||||||||  ||||||||| ||||||| || ||||||    
T  48567500 aaacatccctctaaatcagacaacctcttctcatcacctaaactgagccgtattcaaaaatgttctattccaacgcttagtcagcttccacc 48567591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 362
Target Start/End: Original strand, 23440152 - 23440344
Alignment:
Q  175 taaccaagatctactttcaacacccaaaagaacaacaatcaccaaaacca-acttcaccacctaaatcaaactccatca-caaacagccattgaa--cac 270  Q
    |||||||||  ||| |||||||||||||| ||||||||  || ||||||  ||||||||||||||||||||||||||||  ||||  ||| ||||   ||    
T  23440152 taaccaagacttaccttcaacacccaaaaaaacaacaactactaaaaccccacttcaccacctaaatcaaactccatcataaaacgaccactgaaacaac 23440251  T
Q  271 gaaatccatacaccaccctt--cgctcgctactcaccccaaaaaacacccctctaaatcaaacaacaccttatcttcaccttagttgagccaca 362  Q
    |||||||||| ||| | |||  | |||||| ||||||| |||  |||| ||||||||||||| ||| |||| || ||||||||| |||| ||||    
T  23440252 gaaatccataaacc-ctcttccctctcgctgctcacccaaaattacactcctctaaatcaaataaccccttctcatcaccttagctgaggcaca 23440344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 118 - 402
Target Start/End: Original strand, 9613087 - 9613371
Alignment:
Q  118 gtatataggtggaacacccaaatgaaacaccataaaatacacaaaacaatcatcacctaaccaagatctactttcaacacccaaaagaacaacaatcacc 217  Q
    ||||||||| |||  ||| ||| |||||||||||||||||||||||||  ||||| |||||||||| |||| |||||||||||| |||||||  | ||||    
T  9613087 gtatataggcggatgaccaaaaagaaacaccataaaatacacaaaacacccatcaactaaccaagacctaccttcaacacccaatagaacaatgaccacc 9613186  T
Q  218 aaaaccaacttcaccacctaaatcaaactccatcacaaacagcca-ttgaacacgaaatccatacaccacccttcgctcgctactcaccccaaaaaacac 316  Q
    ||| ||||||||||||||||||||||||| |||| ||||  |||| | ||| | |||||||||  ||| |||||||||||||||||||||||||||| ||    
T  9613187 aaacccaacttcaccacctaaatcaaacttcatcgcaaattgccactggaaaatgaaatccat--accccccttcgctcgctactcaccccaaaaaatac 9613284  T
Q  317 ccctctaaat-caaacaacaccttatcttcaccttagttgagccacatccaaaaatgtcatattccaacccttagtcggcctccacc 402  Q
    || | |||||  |||||||  ||| || ||| | ||  |||||||||||||||||| |  |||| |||| |||||||||||||||||    
T  9613285 ccttataaataaaaacaaccacttctcatcatcataactgagccacatccaaaaatattttatttcaacgcttagtcggcctccacc 9613371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 402
Target Start/End: Original strand, 9081208 - 9081465
Alignment:
Q  149 ataaaatacacaaaacaatcatcacctaaccaagatctactttcaacacccaaaa-gaacaacaatcaccaaaacca-acttcaccacctaaatcaaact 246  Q
    |||||| |||||| |||  |||||| ||| |||||||||| ||||||||||||   ||||||||| || |||||||  | ||  ||||||||||||||||    
T  9081208 ataaaagacacaatacacccatcacttaatcaagatctaccttcaacacccaagctgaacaacaagcatcaaaaccctaatttgccacctaaatcaaact 9081307  T
Q  247 ccatcacaaacag-ccattg--aacacgaaatccatacaccacccttcgctcgctactcaccccaaaaaacacccctctaaatcaaacaacaccttatct 343  Q
    | |||| ||| || ||| ||  || |||||||||||| ||| |||||| || | | || |||||||||| ||||||||||||| |||||||   || ||     
T  9081308 ctatcataaatagaccactgaaaaaacgaaatccataaacc-cccttcccttgttgctaaccccaaaaaccacccctctaaataaaacaacctattctca 9081406  T
Q  344 tcaccttagttgagccacatccaaaaatgtcatattccaacccttagtcggcctccacc 402  Q
    |||||||| ||||||||||  | ||| |||| ||||||||  ||||||| |||||||||    
T  9081407 tcaccttaattgagccacactcgaaagtgtcctattccaatacttagtcagcctccacc 9081465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 22200334 - 22200277
Alignment:
Q  190 ttcaacacccaaaagaacaacaatcaccaaaaccaacttcaccacctaaatcaaactc 247  Q
    |||||||||||||||| | || | || |||||||||| ||||||||||||||||||||    
T  22200334 ttcaacacccaaaagacccaccaccatcaaaaccaacatcaccacctaaatcaaactc 22200277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 22235246 - 22235189
Alignment:
Q  190 ttcaacacccaaaagaacaacaatcaccaaaaccaacttcaccacctaaatcaaactc 247  Q
    |||||||||||||||| | || | || |||||||||| ||||||||||||||||||||    
T  22235246 ttcaacacccaaaagacccaccaccatcaaaaccaacatcaccacctaaatcaaactc 22235189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 27905809 - 27905761
Alignment:
Q  111 aggcgtcgtatataggtggaacacccaaatgaaacaccataaaatacac 159  Q
    ||||||||||||||||||||||||  |||  ||||||||||||| ||||    
T  27905809 aggcgtcgtatataggtggaacacaaaaaataaacaccataaaagacac 27905761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 109 - 252
Target Start/End: Complemental strand, 1946186 - 1946042
Alignment:
Q  109 aaaggcgtcgtatataggtggaacacccaaatgaaacaccataaaatacacaaaacaatcatcacctaaccaagatctactttcaacacccaaaagaaca 208  Q
    |||| ||| |||||||| ||||||| ||||| |||| | ||||||| |||||| ||||||||||||||||||| | |||| ||||||| ||||  |||||    
T  1946186 aaagacgttgtatatagatggaacatccaaaagaaatatcataaaagacacaatacaatcatcacctaaccaaaacctaccttcaacatccaagcgaaca 1946087  T
Q  209 acaatcaccaaaac-caacttcaccacctaaatcaaactccatca 252  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||    
T  1946086 acaaccaccaaaactccacttcaccacctaaatcaaactccatca 1946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 129 - 247
Target Start/End: Original strand, 1945841 - 1945960
Alignment:
Q  129 gaacacccaaatgaaacaccataaaatacacaaaacaatcatcacctaaccaagatctactttcaacacccaaaagaacaacaatcaccaaaac-caact 227  Q
    ||||||||||| |||| ||||||||| |||||| |||| |||||||||||||| | ||||||||||||| |||| ||||||||| ||||||||| | |||    
T  1945841 gaacacccaaaagaaataccataaaagacacaatacaaccatcacctaaccaaaacctactttcaacactcaaacgaacaacaaccaccaaaactccact 1945940  T
Q  228 tcaccacctaaatcaaactc 247  Q
    ||||||||||||||||||||    
T  1945941 tcaccacctaaatcaaactc 1945960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 384
Target Start/End: Original strand, 15817096 - 15817334
Alignment:
Q  143 aacaccataaaatacacaaa-acaatcatcacctaaccaagatctactttcaacacccaaaagaacaacaatcaccaaaaccaacttcaccacctaaatc 241  Q
    ||||||||||||||||| || |||  ||| ||||||| |||  |||||||||||||||   |||||||||| || |||||  ||| ||||||||||||||    
T  15817096 aacaccataaaatacactaataca--cattacctaacgaagtcctactttcaacacccttgagaacaacaaccatcaaaagaaacatcaccacctaaatc 15817193  T
Q  242 aaactccatcacaaacagccattgaacacgaaatccatacaccacccttcgctcgctactcaccccaaaaaacacccctctaaatcaaacaacaccttat 341  Q
    |||||||||  ||||  |||| |||| | |||||||||| |||| || ||||  ||||||||||||||| || |||||||| ||||||||||   ||| |    
T  15817194 aaactccattgcaaatggccactgaaaaagaaatccata-accatccatcgcctgctactcaccccaaataa-acccctctgaatcaaacaatctctttt 15817291  T
Q  342 cttcaccttagttgagccacatccaaaaatgtcatattccaac 384  Q
    | ||||| ||||||| |||||||  ||||| ||||||| ||||    
T  15817292 catcaccatagttgaaccacatctgaaaatttcatatttcaac 15817334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 11199759 - 11199796
Alignment:
Q  214 caccaaaaccaacttcaccacctaaatcaaactccatc 251  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11199759 caccaaaaccaacttcaccgcctaaatcaaactccatc 11199796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 334
Target Start/End: Original strand, 30598963 - 30599002
Alignment:
Q  295 cgctactcaccccaaaaaacacccctctaaatcaaacaac 334  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  30598963 cgctactcataccaaaaaacacccctctaaatcaaacaac 30599002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 27740369 - 27740341
Alignment:
Q  108 taaaggcgtcgtatataggtggaacaccc 136  Q
    |||||||||||||||||||||||||||||    
T  27740369 taaaggcgtcgtatataggtggaacaccc 27740341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 310
Target Start/End: Original strand, 15126823 - 15126964
Alignment:
Q  168 catcacctaaccaagatctactttcaacacccaaaagaacaacaatcaccaaaaccaacttcaccacctaaatcaaactccatcacaaacagccattgaa 267  Q
    ||||||||||||||   ||||  |||| |||||  |||||||||| ||| |||| |||| |||||||||||||||||||||||  |||||||||| | ||    
T  15126823 catcacctaaccaaaccctaccatcaatacccatgagaacaacaaccacaaaaaacaacatcaccacctaaatcaaactccattgcaaacagccactaaa 15126922  T
Q  268 cacgaaatccatacaccacccttcgctcgctactcaccccaaa 310  Q
     | |||||||||| ||||  | |||  ||||||||||||||||    
T  15126923 aaagaaatccata-accattcatcgtccgctactcaccccaaa 15126964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 2613623 - 2613682
Alignment:
Q  190 ttcaacacccaaaagaacaacaatcaccaaaaccaacttcaccacctaaatcaaactcca 249  Q
    |||||||||||||||| | || | ||| |||| |||||||||||||||||||||||||||    
T  2613623 ttcaacacccaaaagacccaccaccacaaaaatcaacttcaccacctaaatcaaactcca 2613682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 313
Target Start/End: Original strand, 1819780 - 1819873
Alignment:
Q  218 aaaaccaacttcaccacctaaatcaaactccatcacaaacagccattgaacacgaaatccatacaccacccttcgctcgctactcaccccaaaaaa 313  Q
    |||||||| ||||| ||||||| ||||||||| | |||||| |||||| | |||||||||||| |  |||| |||| |||||||||| ||||||||    
T  1819780 aaaaccaatttcactacctaaaacaaactccaacgcaaacaaccattggaaacgaaatccata-aatacccatcgc-cgctactcactccaaaaaa 1819873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 26386030 - 26386067
Alignment:
Q  297 ctactcaccccaaaaaacacccctctaaatcaaacaac 334  Q
    ||||||||| || |||||||||||||||||||||||||    
T  26386030 ctactcacctcacaaaacacccctctaaatcaaacaac 26386067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 251
Target Start/End: Original strand, 26367678 - 26367823
Alignment:
Q  107 ataaaggcgtcgtatataggtggaacacccaaatgaaacaccataaaataca-caaaacaatcatcacctaaccaagatctactttcaacacccaaaaga 205  Q
    |||||| || |||||||||  |||||||| |||  ||||||||| ||| ||| ||| |||  |||||| |||| |||  || | |||||||||||  |||    
T  26367678 ataaagacgccgtatatagacggaacacctaaacaaaacaccattaaagacatcaatacacacatcacttaactaagtcctgccttcaacacccatgaga 26367777  T
Q  206 acaacaatcaccaaaaccaacttcaccacctaaatcaaactccatc 251  Q
    ||||||| || |||| ||||||||||||||||| ||||||||||||    
T  26367778 acaacaaccatcaaatccaacttcaccacctaagtcaaactccatc 26367823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 332
Target Start/End: Complemental strand, 5747015 - 5746790
Alignment:
Q  109 aaaggcgtcgtatataggtggaacacccaaatgaaacaccataaaatacacaaa--acaatcatcacctaaccaagatctactttcaacacccaaaagaa 206  Q
    |||||||||||||||||| |||||||| |||   |||| ||  ||| |||| ||  |||  ||||||||| | |||| |||| |||||||||||  |       
T  5747015 aaaggcgtcgtatataggcggaacacctaaaatgaacatcaataaagacacgaattacacacatcacctacctaagacctaccttcaacacccatgaacc 5746916  T
Q  207 caacaatcaccaaaaccaacttcaccacctaaatcaaactccatcacaaacagccattg-aacacgaaatccatacaccacccttcgctcgctactcac- 304  Q
    | |||| |||||||||||| |||||| |||||| || |||||||| |||||| ||| || || || ||||||||| | ||||| |||| ||||||||||     
T  5746915 ccacaaccaccaaaaccaatttcaccgcctaaaacatactccatcgcaaacaaccactgaaaaactaaatccata-agcacccatcgc-cgctactcact 5746818  T
Q  305 cccaaaaaacacccctctaaatcaaaca 332  Q
    || |||||||||||||| ||||||||||    
T  5746817 ccaaaaaaacacccctccaaatcaaaca 5746790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 402
Target Start/End: Complemental strand, 32316713 - 32316490
Alignment:
Q  175 taaccaagatctactttcaacacccaaaagaacaacaatcaccaaaaccaacttcaccacctaaatcaaactccatcacaaacagccattgaacacgaaa 274  Q
    ||||||||| |||| |||||||| || |||||||||||| |||||| | |||| || |||||| |||||||||||  | |||   ||| |||| ||||||    
T  32316713 taaccaagacctaccttcaacacacataagaacaacaattaccaaacctaactgcatcacctagatcaaactccacgagaaatgaccactgaaaacgaaa 32316614  T
Q  275 tccatacaccacccttcgctcgctactcaccccaaaaaacacccctctaaatcaaacaacaccttatcttcaccttagttgagccacatccaaaaatgtc 374  Q
    | |||| | ||||| ||||  | |||||||||| | |||||||||||  |||||||||||  ||| || || |  |||| ||| ||||  ||||||||||    
T  32316613 ttcata-aacacccatcgcatgttactcacccc-agaaacacccctcctaatcaaacaacctcttctcatctcaatagtcgagacaca--caaaaatgtc 32316518  T
Q  375 atattccaacccttagtcggcctccacc 402  Q
     ||||||||| || | ||||||||||||    
T  32316517 ttattccaacgctcattcggcctccacc 32316490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 21029952 - 21029892
Alignment:
Q  190 ttcaacacccaaaagaacaacaatcaccaaaa-ccaacttcaccacctaaatcaaactcca 249  Q
    |||||||||||||||||| || | |||||||| |||||||||||| |||||||||||||||    
T  21029952 ttcaacacccaaaagaaccaccaccaccaaaaaccaacttcaccagctaaatcaaactcca 21029892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 4554320 - 4554420
Alignment:
Q  208 aacaatcaccaaaaccaacttcaccacctaaatcaaactccatcacaaacagccattgaacacgaaatccatacaccacccttcgctcgctactcacccc 307  Q
    ||||||||||||| ||||||||| |||  ||| ||||||||||| |||||  ||| |||| || ||||||||| | || || |||  |||||||||||||    
T  4554320 aacaatcaccaaacccaacttcatcactcaaaccaaactccatcgcaaacgaccactgaaaacaaaatccata-aacatccatcgtccgctactcacccc 4554418  T
Q  308 aa 309  Q
    ||    
T  4554419 aa 4554420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 330
Target Start/End: Original strand, 21349 - 21470
Alignment:
Q  209 acaatcaccaaaaccaacttcaccacctaaatcaaactccatcacaaacagccattg-aacacgaaatccatacaccacccttcgctcgctactcac-cc 306  Q
    |||| |||||||||||| |||||| |||||| || |||||||| |||||| ||  || || || ||||||||| | ||||| |||| |||||||||| ||    
T  21349 acaaccaccaaaaccaatttcaccgcctaaaacatactccatcgcaaacaaccgctgaaaaactaaatccata-agcacccatcgc-cgctactcactcc 21446  T
Q  307 caaaaaacacccctctaaatcaaa 330  Q
     |||||||||||||| ||||||||    
T  21447 aaaaaaacacccctccaaatcaaa 21470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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