View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_57 (Length: 416)
Name: NF0583_low_57
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 58 - 405
Target Start/End: Complemental strand, 32396164 - 32395817
Alignment:
| Q |
58 |
cctttgtggtggcgaagagggttatcccattgtcaagttagaatcaagtgtttaattgtttcagtatctgaatgcttctttggaactctgctgctaaaat |
157 |
Q |
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| T |
32396164 |
cctttgtggtggtgaagagggttatcccattgtcaagttagaatcaagtgtttaattgtttcaatatctgaatgcttctttggaactctgctgccaaaat |
32396065 |
T |
|
| Q |
158 |
caaaattcttaataccatgatgtaagtattaagcaaacaacaatcaaatacattcatgtttaaggtcagataaaaagaagaggaagtgtaccctccatca |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32396064 |
caaaattcttaataccatgatgtaagtattaagcaaacaacaatcaaatacattcatgtttaaggtcagataaaaagaagaggaagtgtaccctccatca |
32395965 |
T |
|
| Q |
258 |
gtattttggtttgtgcatgttaacaccataatgtatgataacgagtgttaagtgttaacatcattactggtttaaagctccaacataaactaataataga |
357 |
Q |
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| T |
32395964 |
gtattttggtttgtgcatgttaacaccataatgtatgataacgagtgttcagtgttaacatcattactggtttaaagctccaacataaactaataataga |
32395865 |
T |
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| Q |
358 |
taatagaagtttcgtaactgtctttgttaattctttgatgttattcat |
405 |
Q |
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| T |
32395864 |
tactagaaatttcgtaactgtctttgttaattctttgatgttattcat |
32395817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 5188830 - 5188783
Alignment:
| Q |
13 |
acaattccttcaacttgaaaacatcccaaggcataaatttgagagcct |
60 |
Q |
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| T |
5188830 |
acaattccttcaacttgaaaacatcttaaggcataaatttgagcgcct |
5188783 |
T |
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