View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_59 (Length: 407)
Name: NF0583_low_59
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_59 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Complemental strand, 6910107 - 6909708
Alignment:
| Q |
7 |
tcgaataatattattacaaatagaataaacctaaaagaaaatgttaatttctttccgtaataaaattcaagcttcaaacgatacatcgatttcttggaag |
106 |
Q |
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| T |
6910107 |
tcgaataaaattattacaaatagaataaacctaaaataaaatgttaatttctttccgtaataaaattcaagcttcaaacgatacatcgatttcttggaag |
6910008 |
T |
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| Q |
107 |
tctctaagcaaaaacaatagataaagtttttgtgagataagttaggtgaagaaggaaaaacaaaggttattaaagacgtgtatattccctcttgaactta |
206 |
Q |
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| T |
6910007 |
tctctaagcaaaaacaatagattaagtttt-gtgagataagttaggtgaagaaggaaaaacaaaggttattaaagacgtgtatattccctcttgaactta |
6909909 |
T |
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| Q |
207 |
ccttgcaaaacaacaaatgcaaaaatgtgcaagtaaccatcaactttttcatcacactcacaattcaaacataacttatccctttcaatgcacttcctcc |
306 |
Q |
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| T |
6909908 |
ccttgcaaaacaacaaatgcaaaaatgtgcaagtaaccatcaactttttcatcccactcacaattcaaacataacttatccctttcaatgcacttcctcc |
6909809 |
T |
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| Q |
307 |
atatgcaaagaataggatgttgaatttatccactcaaaattttaaagagttaaacatatttttagttcgtataaaattataataagttgtttttagtatc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6909808 |
atatgcaaagaataggatgttgaatttatccactcaaaattttaaagagttaaacatatttttagttcttataaaattataataagttgtttttagtatc |
6909709 |
T |
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