View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_60 (Length: 406)
Name: NF0583_low_60
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 30 - 375
Target Start/End: Complemental strand, 38892737 - 38892391
Alignment:
| Q |
30 |
attttgatccgtatgttttctttcccgatcgatataatgcaatgagcaaaggttcactgttaaatctaatccattataagctaatatatttatccacaca |
129 |
Q |
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| T |
38892737 |
attttgatccgtatgttttctttcccgatcgatataatgcaatgagcaaaggttcactgttaaatctaatccattataagctaatatatttatccacaca |
38892638 |
T |
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| Q |
130 |
cacgtgtaatgttaaactagcaatgcaaatgtagaacagagaagagagacaagtgaaaagtgagatttcaaattgttggatttaagtttgagtgattagt |
229 |
Q |
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| T |
38892637 |
cacgtgtaatgttaaactagcaatgcaaatgtagaacagagaagagagacaagtgaaaagtgagatttcaaattgttgggattaagtttgagtgattaat |
38892538 |
T |
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| Q |
230 |
tctacatcaattatgaatagacaaaacgttgaatatatatgagatgtgacatatataca-taatgttttaaggtttttagcgaagatatgatgtctccat |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
38892537 |
tctacatcaattatgaatagacaaaacgttgaatatatatgagatgtgacatatacacattaatgttttaaggttttgagcgaagatatgatgtctccat |
38892438 |
T |
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| Q |
329 |
cgcttataatcataggtaattggtttgttgttgctttctgtgctcct |
375 |
Q |
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| T |
38892437 |
cgcttataatcataggtaattggttcgctgttgctttccgtgctcct |
38892391 |
T |
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