View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_63 (Length: 402)

Name: NF0583_low_63
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_63
NF0583_low_63
[»] chr4 (7 HSPs)
chr4 (29-392)||(6019058-6019421)
chr4 (68-187)||(16422337-16422456)
chr4 (62-186)||(44203602-44203729)
chr4 (40-138)||(41389181-41389283)
chr4 (62-138)||(41389294-41389370)
chr4 (30-93)||(44037211-44037276)
chr4 (64-155)||(33818875-33818966)
[»] chr5 (3 HSPs)
chr5 (29-187)||(408196-408356)
chr5 (30-138)||(41485065-41485175)
chr5 (207-273)||(408379-408445)
[»] chr6 (4 HSPs)
chr6 (41-187)||(16358754-16358901)
chr6 (41-188)||(18849537-18849686)
chr6 (70-156)||(26045833-26045920)
chr6 (70-156)||(26141533-26141620)
[»] scaffold0215 (1 HSPs)
scaffold0215 (41-187)||(24761-24909)
[»] scaffold0025 (1 HSPs)
scaffold0025 (32-186)||(36868-37022)
[»] chr8 (3 HSPs)
chr8 (41-187)||(3372107-3372255)
chr8 (113-187)||(9035580-9035654)
chr8 (62-108)||(9035234-9035280)
[»] chr2 (2 HSPs)
chr2 (39-148)||(41454863-41454974)
chr2 (30-156)||(13693723-13693851)
[»] chr3 (2 HSPs)
chr3 (62-194)||(4477389-4477520)
chr3 (31-86)||(26641434-26641491)
[»] chr1 (2 HSPs)
chr1 (62-187)||(35812107-35812232)
chr1 (62-166)||(20990295-20990399)
[»] chr7 (2 HSPs)
chr7 (51-138)||(33164297-33164389)
chr7 (62-194)||(28195313-28195444)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 29 - 392
Target Start/End: Complemental strand, 6019421 - 6019058
Alignment:
Q  29 aacaatatactattatttatgcgtttgagtttctgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019421 aacaatatactattatttatgcgtttgagtttctgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattg 6019322  T
Q  129 aagaatttaaatctttcatgttgtattccataacaaaatttatgattttattgacgtacttgtaccnnnnnnnnaatgttgtcgtattctggaaccagta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||    
T  6019321 aagaatttaaatctttcatgttgtattccataacaaaatttatgattttattgacgtacttgtaccttttttttaatgttgtcgtattttggaaccagta 6019222  T
Q  229 ctcgtatcgtaccagataccatacccgttcctatgcatcatagttgcaaactttcaagtgacattttacctgatattgacaattgcttcgttttggatct 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019221 ctcgtatcgtaccagataccatacccgttcctatgcatcatagttgcaaactttcaagtgacattttacctgatattgacaattgcttcgttttggatct 6019122  T
Q  329 aagctataaaatagaaaattagtgacgacgaagaaactaatttaccatatagctcatatctctg 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019121 aagctataaaatagaaaattagtgacgacgaagaaactaatttaccatatagctcatatctctg 6019058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 16422456 - 16422337
Alignment:
Q  68 tgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaat 167  Q
    ||||||||||||||||||| ||||||||||| ||||  |||||| |||||| || |||| ||||||||||| ||||||||||| ||||| |||||||||     
T  16422456 tgtaaccaactctaaattttgactttttaaacttctattgtgatttttttgctgcgaatcgaagaatttaactctttcatgttatattctataacaaaac 16422357  T
Q  168 ttatgattttattgacgtac 187  Q
    || |||||||| | ||||||    
T  16422356 ttctgattttactaacgtac 16422337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 186
Target Start/End: Complemental strand, 44203729 - 44203602
Alignment:
Q  62 tgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtatt---cca 158  Q
    |||||||||||||||||||||||||| ||||||| ||||| |  |||| | |||||||||| | ||||||||||||  |||| |||||| ||||     |    
T  44203729 tgttgttgtaaccaactctaaatttcaacttttttaatttttattgtgctgtttttgttgtcagttgaagaatttatctcttccatgttatattatagta 44203630  T
Q  159 taacaaaatttatgattttattgacgta 186  Q
    |||||||| |||||||||||||||||||    
T  44203629 taacaaaacttatgattttattgacgta 44203602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 41389283 - 41389181
Alignment:
Q  40 attatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtga--tatttttgttgtgaattgaagaatt 135  Q
    |||||||||||||||||||||||  |||||| ||||||||||| | |||||||||||||||||| |  |||||  | ||||| |||||||||||||||||    
T  41389283 attatttatgcgtttgagtttctttgttgttataaccaactcttagtttcgactttttaaatttttattgtgagtttttttttttgtgaattgaagaatt 41389184  T
Q  136 taa 138  Q
    |||    
T  41389183 taa 41389181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 41389370 - 41389294
Alignment:
Q  62 tgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaa 138  Q
    ||||||| ||| ||||| ||| |||||||||||||||||||| |  |||  ||||||||||||||| ||||||||||    
T  41389370 tgttgttataatcaactataagtttcgactttttaaatttctaacctgaattttttgttgtgaattaaagaatttaa 41389294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 44037211 - 44037276
Alignment:
Q  30 acaatatactattatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgacttt 93  Q
    |||||| | ||||| || || ||||||||||||  |||||||||||||||||||||||||||||||    
T  44037211 acaatacaatattacttgtgtgtttgagtttctttgttgttgtaaccaactctaaatttcgacttt 44037276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 33818875 - 33818966
Alignment:
Q  64 ttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtatt 155  Q
    |||||||| ||||||||||  ||| ||||||||||||| ||   |||| |||||||||  ||||||||||||||  ||| ||||||| ||||    
T  33818875 ttgttgtagccaactctaatattctactttttaaatttttggcttgatgtttttgttgcaaattgaagaatttagctctctcatgttatatt 33818966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 408196 - 408356
Alignment:
Q  29 aacaatatactattatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaat 126  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||    
T  408196 aacaatatactattatttgtgcgtttgagtttctttgttgttgtaaccgactctaaatttggactttttaaacttctgatgtgatttttttgttgtgaat 408295  T
Q  127 tgaagaatttaaatctttcatgttgtattccataacaaaatttatgattttattgacgtac 187  Q
    |||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  408296 tgaagaatttaattctttcatgttatattctataacaaaacttatgattttattgacgtac 408356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 41485175 - 41485065
Alignment:
Q  30 acaatatactattatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaatt 127  Q
    ||||| || |||||||| |||| ||||||||||  ||| |||||||||||| ||||||| |||||| |||| ||||  |||||| ||||||| |||||||    
T  41485175 acaatttaatattatttgtgcgcttgagtttctttgttattgtaaccaactttaaattttgactttgtaaacttctattgtgatttttttgtcgtgaatt 41485076  T
Q  128 gaagaatttaa 138  Q
    |||||||||||    
T  41485075 gaagaatttaa 41485065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 408379 - 408445
Alignment:
Q  207 ttgtcgtattctggaaccagtactcgtatcgtaccagataccatacccgttcctatgcatcatagtt 273  Q
    ||| |||||||| | ||||||||  |||||||||||| |||| ||||||| |||||||| |||||||    
T  408379 ttgccgtattctcgtaccagtacctgtatcgtaccaggtaccgtacccgtgcctatgcaacatagtt 408445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 16358901 - 16358754
Alignment:
Q  41 ttatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaa 138  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||| |||| ||||||| || || || |||||||||||||||||    
T  16358901 ttatttgtgcgtttgagtttctttgttgttgtaaccaactctaaatttcgactttttaaacttctaatgtgattttctt-ttatgaattgaagaatttaa 16358803  T
Q  139 atctttcatgttgtattccataacaaaatttatgattttattgacgtac 187  Q
     || |||||||| ||||| ||||||||| ||||||||||||||||||||    
T  16358802 ctccttcatgttatattctataacaaaacttatgattttattgacgtac 16358754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 18849537 - 18849686
Alignment:
Q  41 ttatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaa 138  Q
    |||||| ||| |||||||||||  ||||||||||||||||||||||||||| |||||||| |||| ||||||| || ||||| |||||||||||||||||    
T  18849537 ttatttgtgcatttgagtttctttgttgttgtaaccaactctaaatttcgaatttttaaacttctaatgtgattttcttgttatgaattgaagaatttaa 18849636  T
Q  139 atctttcatgttgtattccataacaaaatttatgattttattgacgtact 188  Q
     || |||||||| ||||| || |||||| |||||||||||||||||||||    
T  18849637 ctccttcatgttatattctatgacaaaacttatgattttattgacgtact 18849686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 26045920 - 26045833
Alignment:
Q  70 taaccaactctaaatttcgactttttaaatttctgatgtgatatt-tttgttgtgaattgaagaatttaaatctttcatgttgtattc 156  Q
    ||||||||||||||||| ||||||||||| |||| |||| || || ||| || | ||||||||||||||| |||| |||||| |||||    
T  26045920 taaccaactctaaattttgactttttaaacttctaatgtcattttattttttataaattgaagaatttaactcttccatgttatattc 26045833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 26141620 - 26141533
Alignment:
Q  70 taaccaactctaaatttcgactttttaaatttctgatgtgatatt-tttgttgtgaattgaagaatttaaatctttcatgttgtattc 156  Q
    ||||||||||||||||| ||||||||||| |||| |||| || || ||| || | ||||||||||||||| |||| |||||| |||||    
T  26141620 taaccaactctaaattttgactttttaaacttctaatgtcattttattttttataaattgaagaatttaactcttccatgttatattc 26141533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 24909 - 24761
Alignment:
Q  41 ttatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaa 138  Q
    |||||| ||||| |||||||||  ||||||||||||||||||||||||||| |||||||| |||| ||||||| || ||||| |||||||||||||||||    
T  24909 ttatttgtgcgtgtgagtttctttgttgttgtaaccaactctaaatttcgaatttttaaacttctaatgtgattttcttgttatgaattgaagaatttaa 24810  T
Q  139 atctttcatgttgtattccataacaaaatttatgattttattgacgtac 187  Q
     || |||||||| ||||| || |||||| ||||||||||||||||||||    
T  24809 ctccttcatgttatattctatgacaaaacttatgattttattgacgtac 24761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 36868 - 37022
Alignment:
Q  32 aatatactattatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattga 129  Q
    |||||| | |||||| |||||||||||||||  |||||||||||||  |||||||||| |||||||||| |  | |||||||  ||||||||||||||||    
T  36868 aatataatgttatttgtgcgtttgagtttctttgttgttgtaacca--tctaaatttcaactttttaaactattaatgtgattattttgttgtgaattga 36965  T
Q  130 agaatttaaatctttcatgttgtattccataacaaaatttatgattttattgacgta 186  Q
    ||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  36966 agaatttaactctttcatgttatattctataacaaaacttatgattttattgacgta 37022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 3372255 - 3372107
Alignment:
Q  41 ttatttatgcgtttgagtttctgt--tgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaa 138  Q
    |||||| ||| ||||||||||| |  ||||||||||||||||||||||||| |||||||| |||| ||||||| || ||||| |||||||||||||||||    
T  3372255 ttatttgtgcatttgagtttctttattgttgtaaccaactctaaatttcgaatttttaaacttctaatgtgattttcttgttatgaattgaagaatttaa 3372156  T
Q  139 atctttcatgttgtattccataacaaaatttatgattttattgacgtac 187  Q
     || |||||||| ||||| || |||||| ||||||||||||||||||||    
T  3372155 ctccttcatgttatattctatgacaaaacttatgattttattgacgtac 3372107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 9035580 - 9035654
Alignment:
Q  113 tttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatgattttattgacgtac 187  Q
    ||||||||| |||||||||||||||| ||||||||||| | ||| | ||||||||||||||||||||||||||||    
T  9035580 tttttgttgggaattgaagaatttaactctttcatgttattttctaaaacaaaatttatgattttattgacgtac 9035654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 9035234 - 9035280
Alignment:
Q  62 tgttgttgtaaccaactctaaatttcgactttttaaatttctgatgt 108  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  9035234 tgttgttgtaaccaactctaaatttcgacttcttaaacttctaatgt 9035280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 41454863 - 41454974
Alignment:
Q  39 tattatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaattt 136  Q
    |||||||| ||| |||||||||||  ||| |||||||||||||||||||||||||||||||| ||||  |||||| |||||||||||||| |||||||||    
T  41454863 tattatttgtgcctttgagtttctttgttattgtaaccaactctaaatttcgactttttaaacttctattgtgatttttttgttgtgaatcgaagaattt 41454962  T
Q  137 aaatctttcatg 148  Q
    || |||||||||    
T  41454963 aactctttcatg 41454974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 13693851 - 13693723
Alignment:
Q  30 acaatatactattatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaatt 127  Q
    |||||||| | ||||||  ||||||| ||||||  |||||||||||||||||||||||| ||||||||||  ||||  |||||| |  |||||| |||||    
T  13693851 acaatataatgttatttgcgcgtttgcgtttctttgttgttgtaaccaactctaaattttgactttttaatcttctattgtgatttccttgttgggaatt 13693752  T
Q  128 gaagaatttaaatctttcatgttgtattc 156  Q
    |||| |||||| || |||||||| |||||    
T  13693751 gaagcatttaactcattcatgttatattc 13693723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 4477520 - 4477389
Alignment:
Q  62 tgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataa 161  Q
    ||||||| || |||||||||  |||| |||||||||| |||| ||||||| ||||| |||||||| ||||||||||| | ||||||||| ||||| ||||    
T  4477520 tgttgttttagccaactctatgtttcaactttttaaacttctaatgtgat-tttttattgtgaatcgaagaatttaactttttcatgttatattctataa 4477422  T
Q  162 caaaatttatgattttattgacgtacttgtacc 194  Q
    ||||| |||| ||||||||||||||| ||||||    
T  4477421 caaaacttataattttattgacgtacatgtacc 4477389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 26641434 - 26641491
Alignment:
Q  31 caatatactattatttatgcgtttgagtttct--gttgttgtaaccaactctaaattt 86  Q
    ||||||| | |||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  26641434 caatataatgttatttgtgcgtttgagtttttttgttgttgtaaccaactctaaattt 26641491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 35812232 - 35812107
Alignment:
Q  62 tgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataa 161  Q
    ||||||||||||||||||||  ||||||||||||||| || |   || ||||||||||||| |||||||||||| |  ||| ||||||| ||||  ||||    
T  35812232 tgttgttgtaaccaactctagttttcgactttttaaacttttatcgtaatatttttgttgtaaattgaagaattcagctctctcatgttatattatataa 35812133  T
Q  162 caaaatttatgattttattgacgtac 187  Q
    ||||| | ||||||||||||||||||    
T  35812132 caaaactcatgattttattgacgtac 35812107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 20990399 - 20990295
Alignment:
Q  62 tgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataa 161  Q
    |||||||| |||||||||| | |||| |||||||||| || |  | ||||  ||||||||| ||||||||||||||  | | ||||||| ||||  ||||    
T  20990399 tgttgttgaaaccaactctgattttcaactttttaaaattttattatgatggttttgttgtaaattgaagaatttagctttctcatgttatattatataa 20990300  T
Q  162 caaaa 166  Q
    |||||    
T  20990299 caaaa 20990295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 33164389 - 33164297
Alignment:
Q  51 gtttgagtttc--tgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtga---tatttttgttgtgaattgaagaatttaa 138  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||| |||| ||||||   | ||||||||||| || |||||||||||    
T  33164389 gtttgagtttcgttgttgttgtaaccaactctaaatttcgactttttaaacttctaatgtgattttttttttgttgtggatagaagaatttaa 33164297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 28195313 - 28195444
Alignment:
Q  62 tgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgat-atttttgttgtgaattgaagaatttaaatctttcatgttgtattccata 160  Q
    ||||||||||||||||||||| ||||||||||||||| ||||  ||||||  |||||||||  | ||||||||||||  ||  ||||||| ||||  |||    
T  28195313 tgttgttgtaaccaactctaattttcgactttttaaacttctattgtgatgttttttgttgaaagttgaagaatttaggtc--tcatgttatattatata 28195410  T
Q  161 acaaaatttatgattttattgacgtacttgtacc 194  Q
    |||||| | |||||||| |||||| || ||||||    
T  28195411 acaaaactcatgattttcttgacgcacctgtacc 28195444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 520 times since January 2019
Visitors: 3835