View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_68 (Length: 372)
Name: NF0583_low_68
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 41235462 - 41235801
Alignment:
| Q |
18 |
agaggcaatgaaacaatcacattgtcatttaaatttggattaatttacttcttggaaacaaagaaattctgaaagaatgacaaggttaaacacaaaagaa |
117 |
Q |
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| T |
41235462 |
agaggcaatgaaacaatcacattgtcatttaaatttggattaatttacttcttggaaacaaagaaattctgaaagaatgacaaggttaaacacaaaagaa |
41235561 |
T |
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| Q |
118 |
gtcatcatcaatctcatcatacatgtattttcctccttcttgatcctgaacagcaattctgcttcctcaaccacagcatcccgacttctgtgaaccacgt |
217 |
Q |
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| T |
41235562 |
gtcatcatcaatctcatcatacatgtattttcctccttcttgatcctgaacagcaattctgcttcctcaaccacagcattccgacttctgtgaaccacgt |
41235661 |
T |
|
| Q |
218 |
gctgcagttgtattgttgtgtttgttgattctaattctcgacggctgcaatgtaaaaacagacattcaacttcatgaacaaagagctattaattaacaat |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41235662 |
gctgcagttgcattgttgtgtttgttgattctaattcttgacggctgcaatgtaaaaacagacattcaacttcatgaacaaagagctattaattaataat |
41235761 |
T |
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| Q |
318 |
aaatttgtaaatgaattcaatgaagaggaagtttaaatac |
357 |
Q |
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| T |
41235762 |
aaatttgtaaatgaattcaatgaagaggaagtttaaatac |
41235801 |
T |
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