View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_69 (Length: 371)
Name: NF0583_low_69
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 44 - 360
Target Start/End: Complemental strand, 12723291 - 12722973
Alignment:
| Q |
44 |
acttttgtatcattatatat--tctccacaatgtctagccattagctacatgcaccaaagaaatagagctaaaaatagcaataggtgtgtgttcaaataa |
141 |
Q |
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| T |
12723291 |
acttttgtatcattatatatattctccacaatgtctagccattagctacatgcaccaaagaaatagagctaaaaatagcaataggtgtgtgatcaaataa |
12723192 |
T |
|
| Q |
142 |
gtgatcataaaaatgatgatgaggaaacaaaaacaagtagagaagaaaacaaacaccttcctactagaaaaatcaccaactaaggaataccaaatcactg |
241 |
Q |
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|||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12723191 |
gtgatcataataatgatgatgaggaagcagaaacaagtagagaagaaaacaaacaccttcctactagaaaaatcaccaactaaggaataccaaatcactg |
12723092 |
T |
|
| Q |
242 |
ctccaagtcatgatgatcaatattattccaaagtcacaactatagtcacnnnnnnntcacctcctccaattgaatttcctacctctccacaactcatatt |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12723091 |
ctccaagtcatgatgatcaatattattccaaagtcacaactatagtcacaaaaaaatcacctcctccaattgaatttcctacctcaccacaactcatatt |
12722992 |
T |
|
| Q |
342 |
tggagaagaaataattcat |
360 |
Q |
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||||||||||||||||||| |
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| T |
12722991 |
tggagaagaaataattcat |
12722973 |
T |
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