View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_70 (Length: 369)
Name: NF0583_low_70
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_70 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 45 - 340
Target Start/End: Complemental strand, 61180 - 60885
Alignment:
| Q |
45 |
ggagtagcataggagtcagagtcagaatcaaagccagaggcaacctgctgggaggagacgcgtgttcgtccaaaccgataagggttgtgtgcttggtatg |
144 |
Q |
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| T |
61180 |
ggagtatcatgggagtcagagtcagaatcaaagccagaggcaacctgctgggaggagacgcgtgttcgtccaaaccgataagggttgtgtgcttggtatg |
61081 |
T |
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| Q |
145 |
gaattggatcgcggggacaatgtacatacggttaagaggaggttgcagcttgctcttaatgttcctgttgaagagagttctcttacttttggtgatatgg |
244 |
Q |
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| T |
61080 |
gaattggatcgcggggacaatgtacataccgttaagaggaggttgcagcttgctcttaatgttcctgttgaagagagttctcttacttttggtgatatgg |
60981 |
T |
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| Q |
245 |
tattgaagaatgaccttagtgctgttcggaatgattcgcctcttttattgacgaggagtttgcttcatagaagctcatcaactccttgtttgtctc |
340 |
Q |
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| T |
60980 |
tcttgaagaatgaccttagtgctgttcggaatgattcgcctcttttattgacgaggagtttgcttcatagaagctcatcaactccttgtttgtctc |
60885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 27445773 - 27445636
Alignment:
| Q |
142 |
atggaattggatcgcggggacaatgtacatacggttaagaggaggttgcagcttgctcttaatgttcctgttgaagagagttctcttacttttggtgata |
241 |
Q |
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|||||||||||||| | ||||||| ||||| || ||||||||||||||| |||| |||||||| || ||||||||| ||||| |||||||| ||| |
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| T |
27445773 |
atggaattggatcgtagtgacaatgctcatactgtgaagaggaggttgcagattgcgcttaatgtcccaactgaagagagctctctaacttttggggatg |
27445674 |
T |
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| Q |
242 |
tggtattgaagaatgaccttagtgctgttcggaatgat |
279 |
Q |
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| T |
27445673 |
ttgtcttgaacaatgaccttagttctgttcggaatgat |
27445636 |
T |
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