View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_71 (Length: 367)
Name: NF0583_low_71
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 28 - 356
Target Start/End: Complemental strand, 41675339 - 41675011
Alignment:
| Q |
28 |
cattttcgacctattgaagaagggtttttctgtgagaagcttctttgaagattgcatttggaggaagaagaagaactccttaggagtgaagagtttgaag |
127 |
Q |
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| T |
41675339 |
cattttcgacctattgaagaagggtttttctgtgagaagcttctttgaagattgcatttggaggaagaagaagaactccttaggagtgaagagtttgaag |
41675240 |
T |
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| Q |
128 |
ttgagcttcttgttgaggaactccttgagaacaatgacttggaacttgtctttctcttctcatccataagaaattgtatagtaatatccaaaactagcta |
227 |
Q |
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| T |
41675239 |
tagagcttcttgttgaggaactccttgagaacaatgacttggaacttgtctttctcttctcatccataagaaattgtatagtaatatccaaaactagcta |
41675140 |
T |
|
| Q |
228 |
gctttcacactatgcaactgattctttatttgtgtgtagggnnnnnnngggtactgtgataataagagagaagagaagttagtgagagtgtgtgagtatt |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675139 |
gctttcacactatgcaactgattctttatttgtgtgtagggaaaaaaagggtactgtgataataagagagaagagaagttagtgagagtgtgtgagtatt |
41675040 |
T |
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| Q |
328 |
caaagagatcatcaatgtttgctagtata |
356 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
41675039 |
caaagagatcatcaatgtttgctagtata |
41675011 |
T |
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