View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_73 (Length: 365)

Name: NF0583_low_73
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_73
NF0583_low_73
[»] chr8 (2 HSPs)
chr8 (93-361)||(16391165-16391433)
chr8 (48-89)||(16391105-16391146)
[»] chr6 (9 HSPs)
chr6 (97-204)||(11707980-11708082)
chr6 (93-162)||(11620646-11620715)
chr6 (93-163)||(11629697-11629767)
chr6 (97-161)||(11665490-11665554)
chr6 (48-89)||(11665577-11665618)
chr6 (93-155)||(11671608-11671670)
chr6 (48-89)||(11707916-11707957)
chr6 (48-89)||(12090816-12090857)
chr6 (48-89)||(11671548-11671589)
[»] scaffold0196 (1 HSPs)
scaffold0196 (93-165)||(15154-15226)
[»] scaffold0019 (1 HSPs)
scaffold0019 (94-165)||(6204-6275)
[»] chr1 (1 HSPs)
chr1 (93-150)||(44813941-44813998)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 93 - 361
Target Start/End: Original strand, 16391165 - 16391433
Alignment:
Q  93 ttttgttgtgccagttatccgcatcacttcttttgctgaggcaaagtagtatctctgcttaaaacacaaaataaaaaatgttttatcactatttgctttt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16391165 ttttgttgtgccagttatccgcatcacttcttttgctgaggcaaagtagtatctctgcttaaaacacaaaataaaaaatgttttatcactatttgctttt 16391264  T
Q  193 tgttgaagttataatgaagtatgtagaagaatatgaggaaatacaaatatgatacaaaagaccaagcactgaccactatacgaatttgttacatgataaa 292  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16391265 tgttgaagttataatgaagtatgtagaagaatatgaggaaatacgaatatgatacaaaagaccaagcactgaccactatacgaatttgttacatgataaa 16391364  T
Q  293 tattaaaatatgttaccaaagatctgaaagcagaatacttgttaaaactaagaatgagaattatctacc 361  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||    
T  16391365 tattaaaatatgttaccaaagatctgaaagcagaatactttttaaaactaagaatgagagttatatacc 16391433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 16391105 - 16391146
Alignment:
Q  48 aaaagctcttattgtcactgctccagcaacagtttcagctac 89  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  16391105 aaaagttcttattgtcactgctccagaaacagtttcagctac 16391146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 11707980 - 11708082
Alignment:
Q  97 gttgtgccagttatccgcatcacttcttttgctgaggcaaagtagtatctctgcttaaaacacaaaataaaaaatgttttatcactatttgctttttgtt 196  Q
    ||||||||| |||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||    ||||||||||   |||||||||| ||||    
T  11707980 gttgtgccacttatccgcatcacttcttttgctgcggtgaagtagtatctctgcttaaaacacaaaat----aatgttttat-ggtatttgctttctgtt 11708074  T
Q  197 gaagttat 204  Q
    ||||||||    
T  11708075 gaagttat 11708082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 11620715 - 11620646
Alignment:
Q  93 ttttgttgtgccagttatccgcatcacttcttttgctgaggcaaagtagtatctctgcttaaaacacaaa 162  Q
    ||||||||||||| | | |||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  11620715 ttttgttgtgccattcaaccgcattagttcttttgctgaggcaaagtagtatctctgcttaaaacacaaa 11620646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 11629697 - 11629767
Alignment:
Q  93 ttttgttgtgccagttatccgcatcacttcttttgctgaggcaaagtagtatctctgcttaaaacacaaaa 163  Q
    ||||||||||||| | |||||||| | |||||||||  |||||||||||||||||||||||||||||||||    
T  11629697 ttttgttgtgccattcatccgcattagttcttttgccaaggcaaagtagtatctctgcttaaaacacaaaa 11629767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 11665554 - 11665490
Alignment:
Q  97 gttgtgccagttatccgcatcacttcttttgctgaggcaaagtagtatctctgcttaaaacacaa 161  Q
    ||||||||| |||| ||||||||||||||||| | ||  ||||||||||||||||||||||||||    
T  11665554 gttgtgccacttatacgcatcacttcttttgcagcggtgaagtagtatctctgcttaaaacacaa 11665490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 11665618 - 11665577
Alignment:
Q  48 aaaagctcttattgtcactgctccagcaacagtttcagctac 89  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  11665618 aaaagctcttattgtcactgctccggcaacagtttcagctac 11665577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 11671608 - 11671670
Alignment:
Q  93 ttttgttgtgccagttatccgcatcacttcttttgctgaggcaaagtagtatctctgcttaaa 155  Q
    ||||||||||||| |||||| ||| ||||||||||||   ||||||||||||| |||||||||    
T  11671608 ttttgttgtgccatttatcctcattacttcttttgctaccgcaaagtagtatcgctgcttaaa 11671670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 11707916 - 11707957
Alignment:
Q  48 aaaagctcttattgtcactgctccagcaacagtttcagctac 89  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  11707916 aaaagcccttattgtcactgctccggcaacagtttcagctac 11707957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 12090816 - 12090857
Alignment:
Q  48 aaaagctcttattgtcactgctccagcaacagtttcagctac 89  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  12090816 aaaagctcttattgtcatagctccagcaacagtttcagctac 12090857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 11671548 - 11671589
Alignment:
Q  48 aaaagctcttattgtcactgctccagcaacagtttcagctac 89  Q
    |||||| ||||||||||  |||||||||||||||||||||||    
T  11671548 aaaagcccttattgtcatagctccagcaacagtttcagctac 11671589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 15226 - 15154
Alignment:
Q  93 ttttgttgtgccagttatccgcatcacttcttttgctgaggcaaagtagtatctctgcttaaaacacaaaata 165  Q
    ||||||||| ||| |||||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||    
T  15226 ttttgttgtaccatttatccgcattacttcttttgctaaggcaaaatagtatttctgcttaaaacacaaaata 15154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 6204 - 6275
Alignment:
Q  94 tttgttgtgccagttatccgcatcacttcttttgctgaggcaaagtagtatctctgcttaaaacacaaaata 165  Q
    ||||| |||||| | |||| ||| ||||||||| | ||||||| ||||||||||||||||||||||||||||    
T  6204 tttgtggtgccattcatcctcattacttctttttcagaggcaatgtagtatctctgcttaaaacacaaaata 6275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 44813998 - 44813941
Alignment:
Q  93 ttttgttgtgccagttatccgcatcacttcttttgctgaggcaaagtagtatctctgc 150  Q
    ||||||||||||| | |||||||||| ||||||||| |  ||||||||||||| ||||    
T  44813998 ttttgttgtgccattcatccgcatcagttcttttgcagtagcaaagtagtatccctgc 44813941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2905 times since January 2019
Visitors: 3831