View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_77 (Length: 360)

Name: NF0583_low_77
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_77
NF0583_low_77
[»] chr2 (3 HSPs)
chr2 (1-261)||(18538414-18538674)
chr2 (71-140)||(18549170-18549239)
chr2 (71-140)||(19443415-19443484)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 18538414 - 18538674
Alignment:
Q  1 tcatatttcactacaaaatactcttaattgaattaatcaatgatgaaaactaaacatttaatctttgaactctttatttgtgcactaatgtttatctctg 100  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18538414 tcatatttcactacaatatactcttaattgaattaatcaaggatgaaaaccaaacatttaatctttgaactctttatttgtacactaatgtttatctctg 18538513  T
Q  101 ttatagaaattgagcaatctaaagatgggaaacaatgtatgtatgtgtatattaattgaatgcacaaattttccttattttattgtacttaataataaaa 200  Q
    || |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18538514 ttgtagaaattgagcaatctaaaaatgggaaacagtgtatgtatgtgtatattaattgaatgcacaaattttccttattttattgtacttaataataaaa 18538613  T
Q  201 agtgtttgttaatttgcagttggggcaacaaaagacgtcatatcaaaagttgagacagttc 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18538614 agtgtttgttaatttgcagttggggcaacaaaagacgtcatatcaaaagttgagacagttc 18538674  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 18549170 - 18549239
Alignment:
Q  71 tctttatttgtgcactaatgtttatctctgttatagaaattgagcaatctaaagatgggaaacaatgtat 140  Q
    ||||| |||||||||||   |||||||||||||| | || ||||| ||| ||||||| ||||||||||||    
T  18549170 tctttgtttgtgcactatattttatctctgttatggcaactgagccatccaaagatgagaaacaatgtat 18549239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 19443415 - 19443484
Alignment:
Q  71 tctttatttgtgcactaatgtttatctctgttatagaaattgagcaatctaaagatgggaaacaatgtat 140  Q
    ||||| |||||||||||||  | ||||||||||| ||||||||   ||| |||||||| |||||||||||    
T  19443415 tctttctttgtgcactaattataatctctgttatggaaattgaatcatccaaagatggaaaacaatgtat 19443484  T

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