View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_78 (Length: 357)
Name: NF0583_low_78
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 168 - 351
Target Start/End: Original strand, 26305987 - 26306169
Alignment:
| Q |
168 |
atcagagccagtacagaacaaattgaatgaaaatatggaacataaacgagtttttacctctgagataaacaccgtttcgagcaagatgaagaacacgaat |
267 |
Q |
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| T |
26305987 |
atcagagccagtacagaacaaattgaatgaaaatatggaacataaacgagtttt-acctctgagataaacaccgtttcgagcaagatgaagaacacgaat |
26306085 |
T |
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| Q |
268 |
gagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagccttctaacttctccaccctttgtttc |
351 |
Q |
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| T |
26306086 |
gagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagccttctaacttctccaccttttgtttc |
26306169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 26305894 - 26305958
Alignment:
| Q |
108 |
ttgtgtaccgcagttttgaactatgtgtgacagaatacacatttaagaacaaacattacgatcag |
172 |
Q |
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| T |
26305894 |
ttgtgtaccgcagttttgaactatgtgtgacagaatacacatttaagaacaaacattacgatcag |
26305958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 26305828 - 26305898
Alignment:
| Q |
12 |
acagacagaagaatcaattgtgacagtatagttctaaaatgctgacaaatgcagctacaaatatgattgtg |
82 |
Q |
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| T |
26305828 |
acagacaaaagaagcaattgtgacagcatagttctaaaatgctgacaaatgcagctacaaatatgattgtg |
26305898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 333
Target Start/End: Original strand, 781445 - 781550
Alignment:
| Q |
228 |
tgagataaacaccgtttcgagcaagatgaagaacacgaatgagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagcct |
327 |
Q |
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|||||||||| || ||| ||| |||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||| ||||| |||||| | |
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| T |
781445 |
tgagataaactccatttgaagctagatgaagaacacgaaagagatgaggctgttctgaatgaccacgcatgtgactaaggaagtacattatatgaagcat |
781544 |
T |
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| Q |
328 |
tctaac |
333 |
Q |
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|||||| |
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| T |
781545 |
tctaac |
781550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 336
Target Start/End: Original strand, 46209322 - 46209431
Alignment:
| Q |
227 |
ctgagataaacaccgtttcgagcaagatgaagaacacgaatgagatgaggatgttctgcatgaccacccatgtgactaaggaagtagattatgtgaagcc |
326 |
Q |
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|||||||||||| ||||| |||| ||| ||||||||| ||||||| || |||||||||| ||||||||||| |||| ||| ||||||||||||||| |
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| T |
46209322 |
ctgagataaacatcgttttgagctagacgaagaacactaatgagacgataatgttctgcaaaaccacccatgtagctaaataagcagattatgtgaagcc |
46209421 |
T |
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| Q |
327 |
ttctaacttc |
336 |
Q |
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|||||||||| |
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| T |
46209422 |
ttctaacttc |
46209431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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