View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_82 (Length: 352)
Name: NF0583_low_82
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 347
Target Start/End: Complemental strand, 37959232 - 37958915
Alignment:
| Q |
30 |
aaaacatgcacgaaccaattaaaatttcaaagcttgtagtccttgttcaatgatagaagagaaatattcaaaatcctcggatttgaataccaacccaacc |
129 |
Q |
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| T |
37959232 |
aaaacatgcacgaaccaattaaaatttcaaagcttgtagtccttgttcaatgatagaagagaaatatttaaaatcctcggatttgaataccaacccaacc |
37959133 |
T |
|
| Q |
130 |
tcaagtccaccttctctatcttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcagtct |
229 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37959132 |
tcaagtccaccttctctattttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttagcaggttttccaaatccaaaatcagtct |
37959033 |
T |
|
| Q |
230 |
cataaacattaaacttaggtgaacctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccatatctttaagagg |
329 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37959032 |
cataaacattaaacttaggcgaacctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccatatctttaaaagg |
37958933 |
T |
|
| Q |
330 |
ttcatttttcatctcact |
347 |
Q |
| |
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|||||||||||| ||||| |
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| T |
37958932 |
ttcatttttcatttcact |
37958915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 53 - 347
Target Start/End: Original strand, 37895993 - 37896287
Alignment:
| Q |
53 |
atttcaaagcttgtagtccttgttcaatgatagaagagaaatattcaaaatcctcggatttgaataccaacccaacctcaagtccaccttctctatcttc |
152 |
Q |
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| T |
37895993 |
atttcaaagcttcaagtccatgttcaattacagcacaaaaatattcaaattctccacttttaaacaccaacccaacctcaagaccaccttctctatctcc |
37896092 |
T |
|
| Q |
153 |
actttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcagtctcataaacattaaacttaggtgaa |
252 |
Q |
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| T |
37896093 |
actttcagcaatagacatacacttaaacgaatgcaccatttcaactttaacaggtctaccaaatccaaaatcagtctcataaacattaaacttaggtgat |
37896192 |
T |
|
| Q |
253 |
cctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccatatctttaagaggttcatttttcatctcact |
347 |
Q |
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|||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||| | |||||||| ||||||||||||||| ||||| |
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| T |
37896193 |
cctgttaccaacaatacacttcccacctcatacatcttcttaaatgtatccctccattctcctacatctttaaaaggttcatttttcatttcact |
37896287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 38 - 251
Target Start/End: Complemental strand, 37953480 - 37953267
Alignment:
| Q |
38 |
cacgaaccaattaaaatttcaaagcttgtagtccttgttcaatgatagaagagaaatattcaaaatcctcggatttgaataccaacccaacctcaagtcc |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||| |
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| T |
37953480 |
cacgaaccaattaaaatttcaaagcttgtagtccttgttgaatgacagaagagaaacattcataatcctcagatttgaatgccaacccaacctcaagtcc |
37953381 |
T |
|
| Q |
138 |
accttctctatcttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcagtctcataaaca |
237 |
Q |
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||||||||||||| ||||||||||||||||||||||| | |||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37953380 |
accttctctatctccactttcagcaatagacatacactttaatgaatgcatcatttcaactttaactggttttccaaatccaaaatcagtctcataaaca |
37953281 |
T |
|
| Q |
238 |
ttaaacttaggtga |
251 |
Q |
| |
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|||||||||||||| |
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| T |
37953280 |
ttaaacttaggtga |
37953267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 67 - 251
Target Start/End: Original strand, 39711793 - 39711977
Alignment:
| Q |
67 |
agtccttgttcaatgatagaagagaaatattcaaaatcctcggatttgaataccaacccaacctcaagtccaccttctctatcttcactttcagcaatag |
166 |
Q |
| |
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|||||||||| ||| | |||||||||||||||||| ||||| ||| | ||||||||||| ||||||||||||||||| |||| |||||||||||| || |
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| T |
39711793 |
agtccttgttgaataagagaagagaaatattcaaactcctcacttttaagtaccaacccaaactcaagtccaccttctccatctccactttcagcaagag |
39711892 |
T |
|
| Q |
167 |
acatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcagtctcataaacattaaacttaggtga |
251 |
Q |
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||| || | |||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39711893 |
acacacccttaaatgcatgcaccatctcaactttaacaggttttccaaatccaaaattggtctcataaacattaaacttaggtga |
39711977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 53 - 248
Target Start/End: Original strand, 11527401 - 11527596
Alignment:
| Q |
53 |
atttcaaagcttgtagtccttgttcaatgatagaagagaaatattcaaaatcctcggatttgaataccaacccaacctcaagtccaccttctctatcttc |
152 |
Q |
| |
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|||| ||||||| |||||||||| ||||| |||||| ||||||||||| ||||| ||| | ||||||||||| ||||||||||||||||| |||| | |
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| T |
11527401 |
attttaaagcttcaagtccttgttgaatgagagaagataaatattcaaattcctcacttttaagtaccaacccaaactcaagtccaccttctccatctcc |
11527500 |
T |
|
| Q |
153 |
actttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcagtctcataaacattaaacttagg |
248 |
Q |
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| T |
11527501 |
actttcagcaagagacacagccatagatggatgcaccatctcaactttaacaggtcttccaaatccaaattcggtctcataaacattaaatttagg |
11527596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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