View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_84 (Length: 343)
Name: NF0583_low_84
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_84 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 315
Target Start/End: Original strand, 45549317 - 45549625
Alignment:
| Q |
6 |
agtatcataggactgattaccagctttatttagatctcccatcccaatcatgnnnnnnnncatcacaaggctgaacccaaaacctaaccttatttaagag |
105 |
Q |
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| T |
45549317 |
agtatcattggactgattaccagctttatttagatctcccatcccaatcatgttttttttcatcacaaggctgaacccaaaacctaaccttatttaagag |
45549416 |
T |
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| Q |
106 |
attccagtccagtttcactgactaatttaatgttggtatttgaaaacaagtttgatgatattgtcgaatatacaattaataaatcaacacaattaagtga |
205 |
Q |
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| T |
45549417 |
attccagtccagtttcactgactaatttaatgttggtatttgaaaacaagtttgatgatattgttgaatata-aattaataaatcaacacaattaagtga |
45549515 |
T |
|
| Q |
206 |
tcattttatcaaattaagcattaaatctttttaaatagtacactgatatattgatgcataatgaggagtctaaataaatctgatactttgttgaattgac |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45549516 |
tcattttatcaaattaagcattaaatctttttaaatagtacactgatatattgatacataatgaggagtctaaataaatctgatactttgttgaattgac |
45549615 |
T |
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| Q |
306 |
ctactcacct |
315 |
Q |
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|||||||||| |
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| T |
45549616 |
ctactcacct |
45549625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 45545468 - 45545604
Alignment:
| Q |
91 |
aaccttatttaagagattccagtccagtttcact-gactaatttaatgttggtatttgaaaacaagtttgatgatattgtcgaatatacaattaataaat |
189 |
Q |
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||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||| | ||||| |||||||||||||| ||| |
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| T |
45545468 |
aaccttatttaagagatctcagtccagtttcactagattaatttaatgttggtatttgaaaagaagtttgataaaattgttgaatatacaattaa-aaaa |
45545566 |
T |
|
| Q |
190 |
caacacaattaagtgatcattttatcaaattaagcatt |
227 |
Q |
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| |||||||||||| |||||| ||||||||||||||| |
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| T |
45545567 |
ccacacaattaagtactcatttaatcaaattaagcatt |
45545604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 45550755 - 45550790
Alignment:
| Q |
225 |
attaaatctttttaaatagtacactgatatattgat |
260 |
Q |
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| T |
45550755 |
attaaatctgtttaaatagtacactgatatattgat |
45550790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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