View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_9 (Length: 737)

Name: NF0583_low_9
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_9
NF0583_low_9
[»] scaffold0044 (1 HSPs)
scaffold0044 (44-566)||(5418-5953)
[»] chr6 (12 HSPs)
chr6 (610-721)||(17105671-17105783)
chr6 (606-721)||(23538645-23538761)
chr6 (528-604)||(12465559-12465635)
chr6 (542-606)||(23089887-23089951)
chr6 (531-599)||(9520705-9520773)
chr6 (528-607)||(12486758-12486837)
chr6 (533-606)||(14797359-14797432)
chr6 (563-606)||(17913372-17913415)
chr6 (617-671)||(15174323-15174378)
chr6 (617-671)||(18913785-18913840)
chr6 (617-671)||(18937043-18937098)
chr6 (547-601)||(23295307-23295361)
[»] chr8 (3 HSPs)
chr8 (534-607)||(17508575-17508648)
chr8 (617-668)||(18833406-18833458)
chr8 (618-671)||(37515546-37515600)
[»] chr3 (8 HSPs)
chr3 (541-607)||(12794333-12794399)
chr3 (546-606)||(9637234-9637294)
chr3 (617-671)||(324075-324130)
chr3 (553-606)||(17385825-17385878)
chr3 (617-668)||(324024-324076)
chr3 (617-668)||(43889905-43889957)
chr3 (617-671)||(16796334-16796389)
chr3 (617-671)||(35961756-35961811)
[»] chr7 (6 HSPs)
chr7 (528-607)||(20147620-20147699)
chr7 (540-604)||(17162232-17162296)
chr7 (546-606)||(6461080-6461140)
chr7 (617-671)||(16461054-16461109)
chr7 (543-606)||(11775060-11775123)
chr7 (617-671)||(32301128-32301183)
[»] chr2 (4 HSPs)
chr2 (528-607)||(17740012-17740091)
chr2 (546-606)||(23153984-23154044)
chr2 (546-606)||(23565241-23565301)
chr2 (533-607)||(34897843-34897917)
[»] scaffold0417 (1 HSPs)
scaffold0417 (528-606)||(2638-2715)
[»] scaffold0282 (1 HSPs)
scaffold0282 (540-606)||(20006-20072)
[»] scaffold0024 (1 HSPs)
scaffold0024 (540-605)||(100636-100701)
[»] chr4 (7 HSPs)
chr4 (531-607)||(12451733-12451809)
chr4 (528-606)||(18420015-18420093)
chr4 (546-605)||(10115539-10115598)
chr4 (533-607)||(9198050-9198124)
chr4 (617-671)||(17048359-17048414)
chr4 (533-607)||(9269416-9269490)
chr4 (618-671)||(13592151-13592205)
[»] scaffold0111 (1 HSPs)
scaffold0111 (540-607)||(31290-31357)
[»] scaffold0011 (1 HSPs)
scaffold0011 (617-668)||(125735-125787)
[»] chr5 (3 HSPs)
chr5 (542-606)||(17363177-17363241)
chr5 (617-671)||(22107659-22107714)
chr5 (540-607)||(24193195-24193262)
[»] chr1 (3 HSPs)
chr1 (617-668)||(23967683-23967735)
chr1 (540-603)||(9167275-9167338)
chr1 (617-671)||(29764506-29764561)
[»] scaffold0462 (1 HSPs)
scaffold0462 (617-671)||(10350-10405)


Alignment Details
Target: scaffold0044 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 44 - 566
Target Start/End: Original strand, 5418 - 5953
Alignment:
Q  44 aacaggagaccactatgaataactttttacttgttgagaatgagaaattgaattaaattcaaatcatatatgtccataaatttttggaaccgtaac--tg 141  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |     
T  5418 aacaggagaccactatgaataactttttactttttgagaatgagaaattgaattaaattcaaatcatatatgtccataaatttttggaaccgtaacacta 5517  T
Q  142 ttttgagggaatgtctatatgcaatttt--tatggagtacttgttttcatattttgaattcttttgctatatttgtgtgcatagttataaatttgggcat 239  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5518 ttttgagggaatggctatatgcaatttttttatggagtacttgttttcatattttgaattcttttgctatatttgtgtgcatagttataaatttgggcat 5617  T
Q  240 atgaatcttataccttcttaatagtatttatgaactattattattgctccctgttatgtaagaacttccttccacttgttaacaagtacatgtatataaa 339  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  5618 atgaatcttataccttcttaatagtagttatgagctattattattgctccctgttatgtaagaacttccttccactagttaacaaatacatgtatataaa 5717  T
Q  340 ct-----------atataggatccattgggaatgtgtataatgcttagtttctagggtgcatggaattgttttatttcttgtctcattcggaccttagca 428  Q
     |           |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5718 ttgagtttatatgatataggacccattgggaatgcgtataatgcttagtttctagagtgcatggaattgttttatttcttgtctcattcggaccttagca 5817  T
Q  429 ctgatatatgccatgcatactttgaattataatgttcttatatttggcttgttgatcttgtaagagtataatataattttcatagtgattttaagttaat 528  Q
    |||  ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  5818 ctg--atatgccatgcctactttgaattataatattcttatatttggcttgttgatcttgtgagagtatattataattttcatagtgattttaagttaat 5915  T
Q  529 tgtgttcatggtgatatgatagaataagaacgaatcaa 566  Q
    |||||||| | |||||||||||||||||||||||||||    
T  5916 tgtgttcacgatgatatgatagaataagaacgaatcaa 5953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 6e-33; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 610 - 721
Target Start/End: Complemental strand, 17105783 - 17105671
Alignment:
Q  610 attgatcaagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaacttctggagttgcaagttgttgtcccaaattattgaa 708  Q
    |||||||||||||||||||||| || ||| |||||||||| |||||| |||||||| |||||| || ||||||||||||||||||||||||||||||| |    
T  17105783 attgatcaagttgtaagttgtctttccaaagtattggagtcttaagtcgtcgatgccgtctaagttgtggagttgcaagttgttgtcccaaattattgga 17105684  T
Q  709 accatttgagttg 721  Q
    |||||||||||||    
T  17105683 accatttgagttg 17105671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 606 - 721
Target Start/End: Complemental strand, 23538761 - 23538645
Alignment:
Q  606 gaatattgatcaagttgtaagttgtcgtt-tcaagtattggagtattaagttgtcgatgctgtctaacttctggagttgcaagttgttgtcccaaattat 704  Q
    |||||||||||||||||||| |||| ||| | |||||||||||| |||||| ||||||| ||||||| || ||||||||| |||||||||||||||||||    
T  23538761 gaatattgatcaagttgtaatttgttgttctaaagtattggagtcttaagtcgtcgatgttgtctaagttgtggagttgcgagttgttgtcccaaattat 23538662  T
Q  705 tgaaaccatttgagttg 721  Q
    || ||||||||||||||    
T  23538661 tggaaccatttgagttg 23538645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 528 - 604
Target Start/End: Original strand, 12465559 - 12465635
Alignment:
Q  528 ttgtgttcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgt 604  Q
    |||| |||||| ||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  12465559 ttgtattcatgatgatatgatagaataagaatgaatcaatgatgattgggtgtttaatatgatgaatgtcatgatgt 12465635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 542 - 606
Target Start/End: Original strand, 23089887 - 23089951
Alignment:
Q  542 atatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||    
T  23089887 atatgatagaataagaatgaatcaatgatggttgggtgtttaatatgatgaatgtcatgatgtgg 23089951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 531 - 599
Target Start/End: Complemental strand, 9520773 - 9520705
Alignment:
Q  531 tgttcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcat 599  Q
    |||||||| ||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||    
T  9520773 tgttcatgatgatatgatagaataagaatgaatcaatgatgattgggtgtttaatttgatgaatgtcat 9520705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 528 - 607
Target Start/End: Complemental strand, 12486837 - 12486758
Alignment:
Q  528 ttgtgttcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgga 607  Q
    |||| |||||| |||||| |||||||||||| |||||||||| | | ||||||||||||||||||||||| | |||||||    
T  12486837 ttgtattcatgatgatattatagaataagaatgaatcaatgatgatggggtgtttaatatgatgaatgtcgtaatgtgga 12486758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 606
Target Start/End: Complemental strand, 14797432 - 14797359
Alignment:
Q  533 ttcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    |||||| ||||||||||||||||||| |||| ||||| | |||  ||||||||||| |||||| ||||||||||    
T  14797432 ttcatgatgatatgatagaataagaatgaattaatgacgattgaatgtttaatatgttgaatgccatgatgtgg 14797359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 563 - 606
Target Start/End: Complemental strand, 17913415 - 17913372
Alignment:
Q  563 tcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  17913415 tcaatgatgattgggtgtttaatatgatgaatgtcatgatgtgg 17913372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 671
Target Start/End: Original strand, 15174323 - 15174378
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    |||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||    
T  15174323 aagttgtaagttgtcgttccaaagtattggagtcttaagttgttgatgttgtctaa 15174378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 671
Target Start/End: Complemental strand, 18913840 - 18913785
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    |||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||    
T  18913840 aagttgtaagttgtcgttccaaagtattggagtcttaagttgttgatgttgtctaa 18913785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 671
Target Start/End: Complemental strand, 18937098 - 18937043
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    |||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||    
T  18937098 aagttgtaagttgtcgttccaaagtattggagtcttaagttgttgatgttgtctaa 18937043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 547 - 601
Target Start/End: Original strand, 23295307 - 23295361
Alignment:
Q  547 atagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatga 601  Q
    |||||||||||| |||||||||  | |||| ||||||||||| ||||||||||||    
T  23295307 atagaataagaatgaatcaatgttggttggatgtttaatatggtgaatgtcatga 23295361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 534 - 607
Target Start/End: Complemental strand, 17508648 - 17508575
Alignment:
Q  534 tcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgga 607  Q
    ||||| ||||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||    
T  17508648 tcatgttgatatgatagaatatgaatgaatcaatgatgattgggtgtttaatatgatgaatgtcatgatgtgga 17508575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 668
Target Start/End: Complemental strand, 18833458 - 18833406
Alignment:
Q  617 aagttgtaagttgtcgtttc-aagtattggagtattaagttgtcgatgctgtc 668  Q
    |||||||||||||||||| | |||||||||||| |||||||||||||| ||||    
T  18833458 aagttgtaagttgtcgttccgaagtattggagtcttaagttgtcgatgttgtc 18833406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 671
Target Start/End: Complemental strand, 37515600 - 37515546
Alignment:
Q  618 agttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    ||||| ||||||||||| ||| |||||||||| |||||||||||||| |||||||    
T  37515600 agttgcaagttgtcgttccaaagtattggagtcttaagttgtcgatgttgtctaa 37515546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 541 - 607
Target Start/End: Complemental strand, 12794399 - 12794333
Alignment:
Q  541 gatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgga 607  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||    
T  12794399 gataggatagaataagaacgaatcgatgaagtttgggtgttaaatatgatgaatgtcatgatttgga 12794333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 606
Target Start/End: Original strand, 9637234 - 9637294
Alignment:
Q  546 gatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    |||| |||||||| |||||||||| | |||| |||| ||||||||||||||||||||||||    
T  9637234 gatataataagaatgaatcaatgatgattggatgttaaatatgatgaatgtcatgatgtgg 9637294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 671
Target Start/End: Complemental strand, 324130 - 324075
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    |||||||||||||||||| ||| |||||||||| |||||||||||||| |||||||    
T  324130 aagttgtaagttgtcgttccaaagtattggagtcttaagttgtcgatgttgtctaa 324075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 553 - 606
Target Start/End: Complemental strand, 17385878 - 17385825
Alignment:
Q  553 taagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    |||||| ||||||||||   |||||||||||||||||||| |||||||||||||    
T  17385878 taagaatgaatcaatgatagttgggtgtttaatatgatgattgtcatgatgtgg 17385825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 668
Target Start/End: Complemental strand, 324076 - 324024
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtc 668  Q
    |||||||||||||||||| ||| |||||||||| |||||||||||||| ||||    
T  324076 aagttgtaagttgtcgttccaaagtattggagtcttaagttgtcgatgttgtc 324024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 668
Target Start/End: Original strand, 43889905 - 43889957
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtc 668  Q
    |||||||||||||||||| ||| |||||||||| |||||||||||||| ||||    
T  43889905 aagttgtaagttgtcgttccaaagtattggagtcttaagttgtcgatgttgtc 43889957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 671
Target Start/End: Complemental strand, 16796389 - 16796334
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    |||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||    
T  16796389 aagttgtaagttgtcgttccaaagtattggagtcttaagttgttgatgttgtctaa 16796334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 671
Target Start/End: Original strand, 35961756 - 35961811
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    |||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||    
T  35961756 aagttgtaagttgtcgttccaaagtattggagtcttaagttgttgatgttgtctaa 35961811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 528 - 607
Target Start/End: Complemental strand, 20147699 - 20147620
Alignment:
Q  528 ttgtgttcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgga 607  Q
    ||||||||||| ||||||||||||||||||| ||| |||| | | ||||||||| ||||||||||||||| |||||||||    
T  20147699 ttgtgttcatgatgatatgatagaataagaatgaaccaataatgattgggtgttcaatatgatgaatgtcttgatgtgga 20147620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 540 - 604
Target Start/End: Original strand, 17162232 - 17162296
Alignment:
Q  540 tgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgt 604  Q
    ||||||||||||||||||| |||| ||||| | || || ||||||||||||||||||||||||||    
T  17162232 tgatatgatagaataagaatgaataaatgatgattaggggtttaatatgatgaatgtcatgatgt 17162296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 606
Target Start/End: Original strand, 6461080 - 6461140
Alignment:
Q  546 gatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    ||||||||||||| ||| |||||| | ||||||||||||||||||||  ||||||||||||    
T  6461080 gatagaataagaatgaaacaatgatggttgggtgtttaatatgatgatagtcatgatgtgg 6461140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 671
Target Start/End: Original strand, 16461054 - 16461109
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    |||||||||||||||||| ||| |||||||||| |||||||||||||| |||||||    
T  16461054 aagttgtaagttgtcgttccaaagtattggagtcttaagttgtcgatgttgtctaa 16461109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 11775060 - 11775123
Alignment:
Q  543 tatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    ||||||||||| |||| |||| |||||  ||||| |||||||| ||||||||||| ||||||||    
T  11775060 tatgatagaatgagaatgaattaatgatatttggttgtttaatttgatgaatgtcgtgatgtgg 11775123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 671
Target Start/End: Complemental strand, 32301183 - 32301128
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    |||||| ||||||||||| ||| |||||||||| |||||||||||||| |||||||    
T  32301183 aagttgcaagttgtcgttccaaagtattggagtcttaagttgtcgatgttgtctaa 32301128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 528 - 607
Target Start/End: Complemental strand, 17740091 - 17740012
Alignment:
Q  528 ttgtgttcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgga 607  Q
    |||| |||||| ||||||||||||||||||| |||||||||| | ||| |||||||||||| ||||||||||||| ||||    
T  17740091 ttgtattcatgatgatatgatagaataagaatgaatcaatgatgattgagtgtttaatatgttgaatgtcatgatatgga 17740012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 546 - 606
Target Start/End: Original strand, 23153984 - 23154044
Alignment:
Q  546 gatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    ||||||||||||| |||||||| | | ||||||||||||||||||||||| ||||||||||    
T  23153984 gatagaataagaatgaatcaattatgattgggtgtttaatatgatgaatgccatgatgtgg 23154044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 546 - 606
Target Start/End: Original strand, 23565241 - 23565301
Alignment:
Q  546 gatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    ||||||||||||| |||||||| | | ||||||||||||||||||||||| ||||||||||    
T  23565241 gatagaataagaatgaatcaattatgattgggtgtttaatatgatgaatgccatgatgtgg 23565301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 533 - 607
Target Start/End: Original strand, 34897843 - 34897917
Alignment:
Q  533 ttcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgga 607  Q
    |||||| | ||||||||||||||| | ||||| |||| | ||| ||||||||||||||||| ||| | |||||||    
T  34897843 ttcatgtttatatgatagaataaggatgaatcgatgatgattgagtgtttaatatgatgaacgtcttaatgtgga 34897917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 528 - 606
Target Start/End: Complemental strand, 2715 - 2638
Alignment:
Q  528 ttgtgttcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    |||| |||||| |||||||||||| |||||| |||||||||| | || |||||||||||||||||||||||||||||||    
T  2715 ttgtattcatgatgatatgataga-taagaatgaatcaatgatgatttggtgtttaatatgatgaatgtcatgatgtgg 2638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 606
Target Start/End: Original strand, 20006 - 20072
Alignment:
Q  540 tgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    ||||||||||||||||||| ||||||| || | |||||||||||||||| |||||||||||||||||    
T  20006 tgatatgatagaataagaatgaatcaaagatgattgggtgtttaatatgttgaatgtcatgatgtgg 20072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 540 - 605
Target Start/End: Original strand, 100636 - 100701
Alignment:
Q  540 tgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtg 605  Q
    ||||||||||||||||||| |||||||||| | |||||||||||| ||||||||| ||||||||||    
T  100636 tgatatgatagaataagaatgaatcaatgatggttgggtgtttaacatgatgaatatcatgatgtg 100701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 531 - 607
Target Start/End: Original strand, 12451733 - 12451809
Alignment:
Q  531 tgttcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgga 607  Q
    |||||||| | ||||||||||||||||| |||||||||  | |||| |||||||||||||||||||| |||||||||    
T  12451733 tgttcatgataatatgatagaataagaatgaatcaatgttgattggatgtttaatatgatgaatgtcgtgatgtgga 12451809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 528 - 606
Target Start/End: Original strand, 18420015 - 18420093
Alignment:
Q  528 ttgtgttcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    |||| |||||| ||||| ||||||||||||| |||||||||| | ||||||||||||| |||| ||||| |||||||||    
T  18420015 ttgtattcatgatgataagatagaataagaatgaatcaatgatgattgggtgtttaatttgataaatgttatgatgtgg 18420093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 605
Target Start/End: Original strand, 10115539 - 10115598
Alignment:
Q  546 gatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtg 605  Q
    ||||||||||||| |||||| ||| | ||||||||||||||| |||||||||||||||||    
T  10115539 gatagaataagaatgaatcattgatggttgggtgtttaatattatgaatgtcatgatgtg 10115598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 533 - 607
Target Start/End: Complemental strand, 9198124 - 9198050
Alignment:
Q  533 ttcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgga 607  Q
    |||||| |||||||||| |||||||| ||||| |  | |  |||||||||||| |||||||||||||||||||||    
T  9198124 ttcatgatgatatgatataataagaatgaatccacaatgagtgggtgtttaatttgatgaatgtcatgatgtgga 9198050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 671
Target Start/End: Original strand, 17048359 - 17048414
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    |||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||    
T  17048359 aagttgtaagttgtcgttccaaagtattggagtcttaagttgttgatgttgtctaa 17048414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 533 - 607
Target Start/End: Complemental strand, 9269490 - 9269416
Alignment:
Q  533 ttcatggtgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgga 607  Q
    |||||| ||||||  || |||||||| ||||||| || |  | |||||||||| |||||||||||||||||||||    
T  9269490 ttcatgatgatattttataataagaatgaatcaaggatgagtcggtgtttaatttgatgaatgtcatgatgtgga 9269416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 671
Target Start/End: Original strand, 13592151 - 13592205
Alignment:
Q  618 agttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    ||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||    
T  13592151 agttgtaagttgtcgttccaaagtattggagtcttaagttgttgatgttgtctaa 13592205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 540 - 607
Target Start/End: Original strand, 31290 - 31357
Alignment:
Q  540 tgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgga 607  Q
    |||||||||||| |||||| |||||||||| | |||||||| ||||||| |||||||||| |||||||    
T  31290 tgatatgatagagtaagaatgaatcaatgatgattgggtgtctaatatgttgaatgtcattatgtgga 31357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 668
Target Start/End: Complemental strand, 125787 - 125735
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtc 668  Q
    |||||||||||||||||| ||| |||||||||| |||||||||||||| ||||    
T  125787 aagttgtaagttgtcgttccaaagtattggagtcttaagttgtcgatgttgtc 125735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 542 - 606
Target Start/End: Complemental strand, 17363241 - 17363177
Alignment:
Q  542 atatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgg 606  Q
    ||||||||||||||||| |||||||||| |  | ||||||||||||| |||||| ||||| ||||    
T  17363241 atatgatagaataagaatgaatcaatgatgagtaggtgtttaatatgttgaatgccatgaagtgg 17363177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 671
Target Start/End: Original strand, 22107659 - 22107714
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    |||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||    
T  22107659 aagttgtaagttgtcgttccaaagtattggagtcttaagttgttgatgttgtctaa 22107714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 607
Target Start/End: Complemental strand, 24193262 - 24193195
Alignment:
Q  540 tgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatgtgga 607  Q
    ||||||| || |||||||| ||||||||||   |||| ||||||||||||| |||||||||| |||||    
T  24193262 tgatatgttataataagaatgaatcaatgagaattggatgtttaatatgattaatgtcatgacgtgga 24193195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 668
Target Start/End: Complemental strand, 23967735 - 23967683
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtc 668  Q
    |||||||||||||||||| ||| |||||||||| |||||||||||||| ||||    
T  23967735 aagttgtaagttgtcgttccaaagtattggagtcttaagttgtcgatgttgtc 23967683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 603
Target Start/End: Original strand, 9167275 - 9167338
Alignment:
Q  540 tgatatgatagaataagaacgaatcaatgaagtttgggtgtttaatatgatgaatgtcatgatg 603  Q
    ||||||| || |||||||| ||||||| |  | ||| |||||||||||||||||||||||||||    
T  9167275 tgatatggtaaaataagaatgaatcaaagttgattgagtgtttaatatgatgaatgtcatgatg 9167338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 671
Target Start/End: Original strand, 29764506 - 29764561
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    |||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||    
T  29764506 aagttgtaagttgtcgttccaaagtattggagtcttaagttgttgatgttgtctaa 29764561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 671
Target Start/End: Complemental strand, 10405 - 10350
Alignment:
Q  617 aagttgtaagttgtcgtttcaa-gtattggagtattaagttgtcgatgctgtctaa 671  Q
    |||||||||||||||||| ||| |||||||||| ||||||||| |||| |||||||    
T  10405 aagttgtaagttgtcgttccaaagtattggagtcttaagttgttgatgttgtctaa 10350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 141 times since January 2019
Visitors: 3833