View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0583_low_93 (Length: 332)

Name: NF0583_low_93
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0583_low_93
NF0583_low_93
[»] scaffold0475 (1 HSPs)
scaffold0475 (107-176)||(2315-2384)
[»] chr6 (28 HSPs)
chr6 (107-178)||(4255387-4255458)
chr6 (109-178)||(4258742-4258811)
chr6 (107-178)||(4623798-4623869)
chr6 (107-180)||(4558616-4558689)
chr6 (188-243)||(4254940-4254995)
chr6 (107-170)||(4612292-4612355)
chr6 (107-170)||(4618792-4618855)
chr6 (109-170)||(4507404-4507465)
chr6 (107-180)||(4572457-4572530)
chr6 (107-181)||(4581505-4581579)
chr6 (107-173)||(4627641-4627707)
chr6 (107-168)||(4603601-4603662)
chr6 (107-174)||(4471405-4471472)
chr6 (123-170)||(4513553-4513600)
chr6 (110-174)||(4265627-4265691)
chr6 (107-170)||(3173494-3173557)
chr6 (107-153)||(4569561-4569607)
chr6 (109-167)||(4587125-4587183)
chr6 (107-176)||(4575946-4576015)
chr6 (110-174)||(4462701-4462765)
chr6 (107-170)||(4565520-4565583)
chr6 (107-170)||(4594501-4594564)
chr6 (110-176)||(4497813-4497879)
chr6 (107-173)||(4517831-4517897)
chr6 (110-174)||(4488767-4488831)
chr6 (121-176)||(4482370-4482425)
chr6 (188-239)||(4258274-4258326)
chr6 (126-170)||(4493415-4493459)
[»] chr5 (2 HSPs)
chr5 (188-243)||(24093152-24093207)
chr5 (110-174)||(24104589-24104653)
[»] chr3 (1 HSPs)
chr3 (107-170)||(1282924-1282987)
[»] chr7 (1 HSPs)
chr7 (107-180)||(3088236-3088309)
[»] scaffold0288 (1 HSPs)
scaffold0288 (107-170)||(2025-2088)
[»] scaffold0199 (1 HSPs)
scaffold0199 (107-169)||(1249-1311)
[»] chr8 (2 HSPs)
chr8 (107-169)||(1676012-1676074)
chr8 (107-183)||(20862371-20862447)


Alignment Details
Target: scaffold0475 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 2315 - 2384
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttttt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2315 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggtttttt 2384  T

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Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 4255458 - 4255387
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttat 178  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4255458 ttgctagtttgaataatagattgatatggccttgaactggatatggaatcaacacagcatgtggcattttat 4255387  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 109 - 178
Target Start/End: Complemental strand, 4258811 - 4258742
Alignment:
Q  109 gctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttat 178  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4258811 gctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtggctttttat 4258742  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 4623798 - 4623869
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttat 178  Q
    ||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  4623798 ttgctagtttgaacaatggattgatatgaccttgaactggatatgcaatcaacacagcatgtggctttttat 4623869  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 4558616 - 4558689
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttatca 180  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  4558616 ttgctagtttcaacaatggattgatatggccttgaactggatatggaattaacacagcatgtggttttttatca 4558689  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 4254995 - 4254940
Alignment:
Q  188 gcttgcaccatcggatcagaaattgattggttgttgcgctactgccttgctctccc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4254995 gcttgcaccatcggatcagaaattgattggttgttgcgctactgccttgctctccc 4254940  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 4612355 - 4612292
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 170  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  4612355 ttgctagtttgattaatggattgatatggccttgaactggatatggaattaacactgcatgtgg 4612292  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 4618792 - 4618855
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 170  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  4618792 ttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg 4618855  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 4507404 - 4507465
Alignment:
Q  109 gctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 170  Q
    ||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||    
T  4507404 gctagtttgaacaatggattgatatggccttgagttggatatggaatcaacacagcatgtgg 4507465  T

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Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 4572457 - 4572530
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttatca 180  Q
    |||||||||  || |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||    
T  4572457 ttgctagttgcaacaatggattgatatggccttgaactggatatgggattaacacagcatgtggttttttatca 4572530  T

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Target: chr6; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 4581505 - 4581579
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttatcag 181  Q
    |||||||| | | ||||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  4581505 ttgctagtgttattaatggagtgatatgtccttgaagtggatatggaatcaacactgcatgtggctttttatcag 4581579  T

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Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 4627641 - 4627707
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctt 173  Q
    |||||||| | || |||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  4627641 ttgctagtatcaacaatggattgatatggccttgaagtggaaatggaatcaacacagcatgtggctt 4627707  T

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Target: chr6; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 4603601 - 4603662
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgt 168  Q
    |||||||||| || | |||||||||||||||||||| |||||||||||||||||||||||||    
T  4603601 ttgctagtttcaacattggattgatatggccttgaagtggatatggaatcaacacagcatgt 4603662  T

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Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 4471405 - 4471472
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttt 174  Q
    |||||||||| || |||| |||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  4471405 ttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggcttt 4471472  T

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Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 4513600 - 4513553
Alignment:
Q  123 tggattgatatggccttgaactggatatggaatcaacacagcatgtgg 170  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  4513600 tggattgatatggccttgaagtggatatggaatcaacacagcatgtgg 4513553  T

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Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 4265691 - 4265627
Alignment:
Q  110 ctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttt 174  Q
    |||| ||||| |||| ||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  4265691 ctagattgaacaatgcattgatatggccttgaaatggagctggaatcaacacagcatgtggcttt 4265627  T

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Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 3173494 - 3173557
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 170  Q
    |||||||||| || |||| |||||||||||||||||||||||||||| | ||||| ||||||||    
T  3173494 ttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtgg 3173557  T

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Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 4569561 - 4569607
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatgga 153  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  4569561 ttgctagtttcaataatggattgatatggccttgaagtggatatgga 4569607  T

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Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 4587125 - 4587183
Alignment:
Q  109 gctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatg 167  Q
    |||||||| || ||||||||||||||||||||||||||| |||| || |||||||||||    
T  4587125 gctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 4587183  T

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Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 4575946 - 4576015
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttttt 176  Q
    |||||| ||| || |||| |||||||||||||||||||||| ||||| | ||||| ||||||||||||||    
T  4575946 ttgctattttcaacaatgcattgatatggccttgaactggaaatggagttaacactgcatgtggcttttt 4576015  T

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Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 4462701 - 4462765
Alignment:
Q  110 ctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttt 174  Q
    ||||||| || |||| |||||||||||||||   |||| ||||||||||||||||||||||||||    
T  4462701 ctagtttcaacaatgcattgatatggccttgggatggacatggaatcaacacagcatgtggcttt 4462765  T

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Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 4565520 - 4565583
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 170  Q
    |||| |||||||| |||||||| ||||| ||||||| ||||  |||||||||||||||||||||    
T  4565520 ttgcaagtttgaacaatggatttatatgtccttgaaatggagctggaatcaacacagcatgtgg 4565583  T

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Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 4594501 - 4594564
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 170  Q
    |||| |||||||| |||||||| ||||| ||||||| ||||  |||||||||||||||||||||    
T  4594501 ttgcaagtttgaacaatggatttatatgtccttgaagtggagctggaatcaacacagcatgtgg 4594564  T

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Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 4497879 - 4497813
Alignment:
Q  110 ctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttttt 176  Q
    ||||||| || ||||||||||||||||||| || |||| ||||| | ||||| ||||||||||||||    
T  4497879 ctagtttcaacaatggattgatatggccttaaattggaaatggagttaacactgcatgtggcttttt 4497813  T

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Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 4517831 - 4517897
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctt 173  Q
    |||||||||| || || ||||||||||||||||||| |||||||||| | | ||| |||||||||||    
T  4517831 ttgctagttttaacaacggattgatatggccttgaagtggatatggagttatcactgcatgtggctt 4517897  T

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Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 4488831 - 4488767
Alignment:
Q  110 ctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttt 174  Q
    ||||||| || |||| |||||||||||||||||||||| ||||  | ||||| ||||||||||||    
T  4488831 ctagtttcaacaatgcattgatatggccttgaactggaaatggtgttaacactgcatgtggcttt 4488767  T

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Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 4482370 - 4482425
Alignment:
Q  121 aatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttttt 176  Q
    |||| |||||||||||||||| ||||| ||||| ||||||| |||||||| |||||    
T  4482370 aatgcattgatatggccttgagctggaaatggagtcaacactgcatgtggtttttt 4482425  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 4258326 - 4258274
Alignment:
Q  188 gcttgcaccatcgga-tcagaaattgattggttgttgcgctactgccttgctc 239  Q
    ||||||||||| ||| |||||  ||||||||||||||||||||||| ||||||    
T  4258326 gcttgcaccattggaatcagaccttgattggttgttgcgctactgctttgctc 4258274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 4493415 - 4493459
Alignment:
Q  126 attgatatggccttgaactggatatggaatcaacacagcatgtgg 170  Q
    ||||||||| |||||| ||||| ||||||||||||| ||||||||    
T  4493415 attgatatgaccttgagctggaaatggaatcaacactgcatgtgg 4493459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 24093152 - 24093207
Alignment:
Q  188 gcttgcaccatcggatcagaaattgattggttgttgcgctactgccttgctctccc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24093152 gcttgcaccatcggatcagaaattgattggttgttgcgctactgccttgctctccc 24093207  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 24104589 - 24104653
Alignment:
Q  110 ctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttt 174  Q
    |||||||||| |||| ||||||||| ||||||| ||||  |||||||||||||||||| ||||||    
T  24104589 ctagtttgaacaatgcattgatatgaccttgaaatggagctggaatcaacacagcatgcggcttt 24104653  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 1282924 - 1282987
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 170  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1282924 ttgctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtgg 1282987  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 3088236 - 3088309
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttatca 180  Q
    |||||||||| || |||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  3088236 ttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatca 3088309  T

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Target: scaffold0288 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 2088 - 2025
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 170  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  2088 ttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg 2025  T

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Target: scaffold0199 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 1249 - 1311
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtg 169  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  1249 ttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtg 1311  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 1676012 - 1676074
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtg 169  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  1676012 ttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtg 1676074  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 20862447 - 20862371
Alignment:
Q  107 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttatcagca 183  Q
    |||||||||| || | |||||||||||| ||||||| |||||||||| | ||||| |||||||| ||||| ||||||    
T  20862447 ttgctagttttaacattggattgatatgaccttgaagtggatatggagttaacactgcatgtggttttttctcagca 20862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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