View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0583_low_94 (Length: 325)
Name: NF0583_low_94
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_94 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 28222108 - 28221842
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28222108 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaa |
28222009 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattattc |
229 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| ||| ||||||| |
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| T |
28222008 |
tgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacattccgttgctgatgacattattc |
28221909 |
T |
|
| Q |
230 |
ttattgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28221908 |
ttattgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatactcgggtctggtt |
28221842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 28214176 - 28214442
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28214176 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaatctctgatagtagtgagtgtcaaaagatgctccagatgacactgcagatgacaa |
28214275 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattattc |
229 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| ||||||| |
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| T |
28214276 |
tgcttgcttgtatgacatccctttgttattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacattccgttgctgctgacattattc |
28214375 |
T |
|
| Q |
230 |
ttattgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
28214376 |
ttattgttgtcaggacagttttgcctcatctgactaaggaaatcgagaggtatactcgggtctggtt |
28214442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 32786612 - 32786881
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32786612 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
32786711 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtc---attagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatatta |
226 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
32786712 |
tgcttgcatgtatgacatccctttgtcactactagagtgatgaacattcattttctttgaaattgtaaacgtcgaaaacgtgccgttgctgctgatatta |
32786811 |
T |
|
| Q |
227 |
ttcttattgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32786812 |
ttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggtt |
32786881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 32310660 - 32310394
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32310660 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
32310561 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattattc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||| ||| ||| |
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| T |
32310560 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacgttcattggctttgaagctgtaaacgacgaaaacgtgccgttgctgctgaaattgttc |
32310461 |
T |
|
| Q |
230 |
ttattgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| || ||||||| |
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|
| T |
32310460 |
ttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggtt |
32310394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 32813823 - 32814089
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
32813823 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggtactgcagatgacaa |
32813922 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattattc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| ||| |
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|
| T |
32813923 |
tgcttgcatgtatgacatccctttgtcattagagagttgaacattcattggctttgaagctgtaaacgtcgaaaacgtgccgttgctgctgaaattgttc |
32814022 |
T |
|
| Q |
230 |
ttattgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| || ||||||| |
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|
| T |
32814023 |
ttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggtt |
32814089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 32564160 - 32564426
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
32564160 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaaaatgctccagatggaactgcagatgacaa |
32564259 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattattc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||| ||| ||| |
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|
| T |
32564260 |
tgcttgcatgtatgacatccctttgtcattagagtgatgaacgttcattggctttgaagctgtaaacgacgaaaacgtgccgttgctgctgaaattgttc |
32564359 |
T |
|
| Q |
230 |
ttattgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| || ||||||| |
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|
| T |
32564360 |
ttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatactcggatctggtt |
32564426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 30 - 296
Target Start/End: Complemental strand, 32306530 - 32306261
Alignment:
| Q |
30 |
ccatcagctgttgatcagcaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaa |
129 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
32306530 |
ccatcagctgttgatcagaaaacaataaccctcttcctctcaacaaactctgatagtagtgagtgtcaaaatatgctccagatggcactgcagatgacaa |
32306431 |
T |
|
| Q |
130 |
tgcttgcatgtatgacatccctttgtc---attagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatatta |
226 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| |||| | ||||||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
32306430 |
tgcttgcatgtatgacatccctttgtcactactagagtgatgagcatttactggctttgaaactgtaaacgtcgaaaacgtgccgttgctgttgatattg |
32306331 |
T |
|
| Q |
227 |
ttcttattgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtatacttgggtctggtt |
296 |
Q |
| |
|
|||||| ||| ||||||||||||| | |||||| |||||| ||||||||||||||||| |||||||||| |
|
|
| T |
32306330 |
ttcttactgtagtcaggacagtttagtctcatcagactgaaaaaatcgagaggtatactcgggtctggtt |
32306261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 89 - 281
Target Start/End: Complemental strand, 32317567 - 32317376
Alignment:
| Q |
89 |
tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaa |
188 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||| |||||| |||||| |||||||| | |||||||||||| ||||| ||||||||||||| |
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|
| T |
32317567 |
tgagtgtcaaaagatgtta-agatggcactgcatatgacaaagcttgcgcgtatgatatccctttattattagagtgatggacattaattggctttgaaa |
32317469 |
T |
|
| Q |
189 |
ctgtaaacgtcgaaaacgtgccattgctgctgatattattcttattgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggta |
281 |
Q |
| |
|
|| ||| ||||||||| || | ||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||| || ||||||||||||| |
|
|
| T |
32317468 |
ctataaccgtcgaaaatgtactgttgttgctgatattattctaattgttgtcaggacaattttgcctcatatgacttagaaaatcgagaggta |
32317376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 283
Target Start/End: Complemental strand, 28183206 - 28183044
Alignment:
| Q |
115 |
cactgcagatgacaatgcttgcatgtatgacatccctttgtcattagagtgatgaacattcattggctttgaaactgtaaacgtcgaaaacgtgccattg |
214 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| | ||||||||| ||||||||||||| ||| ||||||| ||||| || | |
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|
| T |
28183206 |
cactgcagatgacaacgcttccatgtatgacatcccttttttgttagagtgag---cattcattggcttaaaaatcacaaacgtcaaaaacttgttgatt |
28183110 |
T |
|
| Q |
215 |
ctgctgatattattcttattgttgtcaggacagttttgcctcatctgactgaggaaatcgagaggtata |
283 |
Q |
| |
|
|||||| | ||||||| |||||| ||||||||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
28183109 |
ctgctgctgatattctt---gttgtctggacagttttgcctcatctgactaaggaaatcaagaagtata |
28183044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 28158788 - 28158724
Alignment:
| Q |
89 |
tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt |
153 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
28158788 |
tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttt |
28158724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 28169357 - 28169293
Alignment:
| Q |
89 |
tgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt |
153 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
28169357 |
tgagtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttt |
28169293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 28177478 - 28177383
Alignment:
| Q |
58 |
ccctcttcctctcaacaaactctgatagtagtgagtgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacatcccttt |
153 |
Q |
| |
|
|||||||||||| || |||||| |||| | ||||||||| |||||| ||||| ||||||||||||||| ||||||||| ||||||| |||| |
|
|
| T |
28177478 |
ccctcttcctcttaataaactcggatatcatcaagtgtcaaatgatgcttaagatgacactgcagatgacaacgcttgcatgcctgacatcacttt |
28177383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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