View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0583_low_97 (Length: 320)
Name: NF0583_low_97
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_97 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 148 - 261
Target Start/End: Complemental strand, 2061272 - 2061160
Alignment:
| Q |
148 |
taaagatgatctttctcacatgagagaactctaaccttaattatcttgttcatatatatgcagtggctgaagattaatttggggcagtggagaaataaaa |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2061272 |
taaagatgatctttctcacatgagagaactctaaccttaattatcttgttc--gtatatgcagtggctgaagattaatttggggcagtggagaaataaaa |
2061175 |
T |
|
| Q |
248 |
ttc-aacatgataag |
261 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
2061174 |
ttctaacatgataag |
2061160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 2061455 - 2061374
Alignment:
| Q |
69 |
tttataaacgcttgtagttggattttatcnnnnnnngaaaaatgataagatgaatagattgtgtgtaatatttggctaataaa |
151 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2061455 |
tttataaacgcttgtaattggattttatctttttttgaaaaatgataagatgaatagattgtgtgtaata-ttggctaataaa |
2061374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 1579020 - 1578974
Alignment:
| Q |
105 |
gaaaaatgataagatgaatagattgtgtgtaatatttggctaataaa |
151 |
Q |
| |
|
||||||| |||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
1579020 |
gaaaaattataagatgaataaaatatgtgtaatatttggctaataaa |
1578974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 18452521 - 18452567
Alignment:
| Q |
105 |
gaaaaatgataagatgaatagattgtgtgtaatatttggctaataaa |
151 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
18452521 |
gaaaaattataagatgaataaattgtgtgtaatatttggttaataaa |
18452567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 47325874 - 47325830
Alignment:
| Q |
107 |
aaaatgataagatgaatagattgtgtgtaatatttggctaataaa |
151 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
47325874 |
aaaattataagatgaataaattgtgtgtaatatttggttaataaa |
47325830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 47340670 - 47340626
Alignment:
| Q |
107 |
aaaatgataagatgaatagattgtgtgtaatatttggctaataaa |
151 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
47340670 |
aaaattataagatgaataaattgtgtgtaatatttggttaataaa |
47340626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 15737355 - 15737401
Alignment:
| Q |
105 |
gaaaaatgataagatgaatagattgtgtgtaatatttggctaataaa |
151 |
Q |
| |
|
||||||| |||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
15737355 |
gaaaaattataagatgaataaaatatgtgtaatatttggctaataaa |
15737401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 35467578 - 35467542
Alignment:
| Q |
115 |
aagatgaatagattgtgtgtaatatttggctaataaa |
151 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
35467578 |
aagatgaatacattgtgtataatatttggctaataaa |
35467542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 11233888 - 11233934
Alignment:
| Q |
105 |
gaaaaatgataagatgaatagattgtgtgtaatatttggctaataaa |
151 |
Q |
| |
|
||||||| |||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
11233888 |
gaaaaattataagatgaataaaatatgtgtaatatttggctaataaa |
11233934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 123600 - 123645
Alignment:
| Q |
106 |
aaaaatgataagatgaatagattgtgtgtaatatttggctaataaa |
151 |
Q |
| |
|
|||||| | |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
123600 |
aaaaattagaagatggataaattgtgtgtaatatttggctaataaa |
123645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 33 times since January 2019
Visitors: 3831