View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0583_low_98 (Length: 318)
Name: NF0583_low_98
Description: NF0583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0583_low_98 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6083506 - 6083267
Alignment:
| Q |
1 |
ctcttgaaaattggtcttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatcc |
100 |
Q |
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| T |
6083506 |
ctcttgaaaattggacttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatcc |
6083407 |
T |
|
| Q |
101 |
aatcatcaatgcattacgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaaattgtctttcgcgataatagatttgttaagataagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6083406 |
aatcatcaatgcattacgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaaattgtctttcgcgataatagatttgttaagataagaa |
6083307 |
T |
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| Q |
201 |
ttttcaatcacagttttagcaagccttttacttttctctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
6083306 |
ttttcaatcacagttttagcaagccttttacttttctctg |
6083267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 39107914 - 39108062
Alignment:
| Q |
15 |
tcttcatttcgaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaacagactctaatccaatcatcaatgcat |
114 |
Q |
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||||||||||| || || || ||||||| ||| ||||| ||||||| ||||||||| |||||| |||||| |||||||||| || ||||| |||| |
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| T |
39107914 |
tcttcatttcggatctccagctccttttcaagtactcggacctcatatgtcagagaagcattatctttctcagtggactctaatctaaccatcagtgcac |
39108013 |
T |
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| Q |
115 |
tacgatccacgtctgcttgattcaattgtcttctcagatcatcaatcaa |
163 |
Q |
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| T |
39108014 |
tatgatctgcctcagcttgagtcaattgtcttttcagatcctcaatcaa |
39108062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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