View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0584-Insertion-2 (Length: 386)
Name: NF0584-Insertion-2
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0584-Insertion-2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Complemental strand, 6261994 - 6261615
Alignment:
| Q |
7 |
agtttgtgcatgtttgaattgacggcgagtttgacagaattacggtgtcactcaaaatcggtgtcatcgtgattatgtcaaattcacggtgatttcaaat |
106 |
Q |
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| T |
6261994 |
agtttgtgcatgtttgaattgacggcgagtttgacagaatcacgatgtcactcaaaatcagtgtcatcgtgattatgtcaaaatcacagtgatttcaaac |
6261895 |
T |
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| Q |
107 |
aagttcttaatgaagtggaatagatcatcacttacatctcacttgttcatctttacaaatctctttaacaagagttgttttcccagatccaccaatccca |
206 |
Q |
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| T |
6261894 |
aagttcttaatgaagtggaatagatcatcacttacatctcacttgttcatctttacaaatctctttaacaagagttgttttcccagatccaccaatccca |
6261795 |
T |
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| Q |
207 |
tgaataccaacaacccataaatcctctcttcccataaccatctccttaactttcttcttccccaaatccaaaccgacactcaaactcaaattcccataat |
306 |
Q |
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| T |
6261794 |
tgaataccaacaacccataaatcctctcttcccataaccatctccttaactttcttcttccccaaatccaaaccaacactcaaactcaaattcccataat |
6261695 |
T |
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| Q |
307 |
taccctcaacccaattctcatcttcctccatacaagacctcacagcttcctgcacccaccctccacctcccacgccaatc |
386 |
Q |
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| T |
6261694 |
taccctcaacccaattctcatcttcctccatacaagacctcacagcttcctgcacccaccctccacctcccacgccaatc |
6261615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 124 - 314
Target Start/End: Complemental strand, 6270889 - 6270699
Alignment:
| Q |
124 |
gaatagatcatcacttacatctcacttgttcatctttacaaatctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaaccca |
223 |
Q |
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| T |
6270889 |
gaatagattatcacttacctctcacttgttcatctctacaaatctctctggcaagagtagttttcccagatccaccaatcccagaaattccaacaagaca |
6270790 |
T |
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| Q |
224 |
taaatcctctcttcccataaccatctccttaactttcttcttccccaaatccaaaccgacactcaaactcaaattcccataattaccctca |
314 |
Q |
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| T |
6270789 |
aaaatctttccttccaacaaccatttccataaccttattcttcccaaactccaaaccaaaactcaaatccaaattccccaaactaccctca |
6270699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 17240693 - 17240728
Alignment:
| Q |
11 |
tgtgcatgtttgaattgacggcgagtttgacagaat |
46 |
Q |
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| T |
17240693 |
tgtgcatgtttgaattgacggtgagtttgacagaat |
17240728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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