View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0584_high_10 (Length: 328)
Name: NF0584_high_10
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0584_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 34704791 - 34704507
Alignment:
| Q |
16 |
attcaaaataaattagttgatgcaatatagtagctgaataattgcgacatgaaacgttctcctattcctaaggctcaactttcatgcatttgagcttcat |
115 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34704791 |
attcaaaataaattagttgatgcaacatagtagctgaataattgcgacatgaaacgttctcctattcctgaggctcaactttcatgcatttgagcttcac |
34704692 |
T |
|
| Q |
116 |
cgctttgacaggctttgtggcagattcctcaccatccagctcatataccgtcagatctgaaatagcattctcagcagatcttttgcccaccgctttgctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34704691 |
cgctttgacaggctttgtggcagattcctcaccatccagctcatataccgtcagatctgaaatagcattctcagcagatcttttgcccaccgctttgctg |
34704592 |
T |
|
| Q |
216 |
tagggtgtctgctcatcctcattgtcacgatcagaagagtcctacaattcgcttgctttttctttaacaacagaaagtgatgaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34704591 |
tagggtgtctgctcatcctcattgtcacgatcagaagagtcctacaattcgcttgctttttctttaacaacagaaagtgatgaat |
34704507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 28548410 - 28548694
Alignment:
| Q |
16 |
attcaaaataaattagttgatgcaatatagtagctgaataattgcgacatgaaacgttctcctattcctaaggctcaactttcatgcatttgagcttcat |
115 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28548410 |
attcaaaataaattagttgatgcaacatagtagctgaataattgcgacatgaaacgttctcctattcctgaggctcaactttcatgcatttgagcttcac |
28548509 |
T |
|
| Q |
116 |
cgctttgacaggctttgtggcagattcctcaccatccagctcatataccgtcagatctgaaatagcattctcagcagatcttttgcccaccgctttgctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28548510 |
cgctttgacaggctttgtggcagattcctcaccatccagctcatataccgtcagatctgaaatagcattctcagcagatcttttgcccaccgctttgctg |
28548609 |
T |
|
| Q |
216 |
tagggtgtctgctcatcctcattgtcacgatcagaagagtcctacaattcgcttgctttttctttaacaacagaaagtgatgaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28548610 |
tagggtgtctgctcatcctcattgtcacgatcagaagagtcctacaattcgcttgctttttctttaacaacagaaagtgatgaat |
28548694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 41868000 - 41867716
Alignment:
| Q |
16 |
attcaaaataaattagttgatgcaatatagtagctgaataattgcgacatgaaacgttctcctattcctaaggctcaactttcatgcatttgagcttcat |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41868000 |
attcaaaataaattagttgatgcaacatagtagctgaataattgcgacatgaaacgttctcctattcctgaggctcaactttcatgcatttgagcttcac |
41867901 |
T |
|
| Q |
116 |
cgctttgacaggctttgtggcagattcctcaccatccagctcatataccgtcagatctgaaatagcattctcagcagatcttttgcccaccgctttgctg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41867900 |
cgctttgacaggctttgtggcagattcctcaccatccagctcatataccgtcagatctgaaatagcattctcagcagatcttttgcccaccgctttgctg |
41867801 |
T |
|
| Q |
216 |
tagggtgtctgctcatcctcattgtcacgatcagaagagtcctacaattcgcttgctttttctttaacaacagaaagtgatgaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41867800 |
tagggtgtctgctcatcctcattgtcacgatcagaagagtcctacaattcgcttgctttttctttaacaacagaaagtgatgaat |
41867716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 31378791 - 31378685
Alignment:
| Q |
132 |
gtggcagattcctcaccatccagctcatataccgtcagatctgaaatagcattctcagcagatcttttgcccaccgctttgctgtagggtgtctgctcat |
231 |
Q |
| |
|
||||||||||| || ||||||||||| || ||||| | || |||| || |||||||| |||| || ||||||| ||||||| |||||||||| |||| |
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| T |
31378791 |
gtggcagattcgtcgccatccagctcgtagaccgttaattcagaaactgctttctcagctgatcgcttacccaccggtttgctgcagggtgtctgatcat |
31378692 |
T |
|
| Q |
232 |
cctcatt |
238 |
Q |
| |
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| ||||| |
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| T |
31378691 |
catcatt |
31378685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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