View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0584_high_14 (Length: 251)

Name: NF0584_high_14
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0584_high_14
NF0584_high_14
[»] chr5 (25 HSPs)
chr5 (30-251)||(43129524-43129745)
chr5 (75-251)||(33691950-33692127)
chr5 (75-251)||(35310483-35310660)
chr5 (30-166)||(37873619-37873755)
chr5 (85-251)||(27336738-27336905)
chr5 (85-231)||(14423723-14423869)
chr5 (30-167)||(13166890-13167027)
chr5 (30-167)||(25663012-25663149)
chr5 (85-251)||(32269692-32269859)
chr5 (72-218)||(3114092-3114238)
chr5 (86-167)||(15292006-15292087)
chr5 (86-247)||(26212483-26212644)
chr5 (68-204)||(32230450-32230586)
chr5 (33-145)||(42921690-42921802)
chr5 (32-155)||(34335329-34335452)
chr5 (85-243)||(35456001-35456159)
chr5 (101-158)||(8858977-8859034)
chr5 (31-167)||(38875629-38875765)
chr5 (119-251)||(433371-433504)
chr5 (91-225)||(8100603-8100737)
chr5 (92-229)||(9829272-9829407)
chr5 (85-148)||(14436545-14436605)
chr5 (85-124)||(430647-430686)
chr5 (101-139)||(7143767-7143805)
chr5 (31-115)||(22188687-22188771)
[»] chr4 (31 HSPs)
chr4 (30-251)||(132375-132599)
chr4 (30-243)||(56462011-56462223)
chr4 (85-251)||(53619631-53619798)
chr4 (31-155)||(600684-600808)
chr4 (85-251)||(31847132-31847299)
chr4 (68-251)||(50000820-50001005)
chr4 (30-251)||(26521478-26521700)
chr4 (76-251)||(55933357-55933533)
chr4 (31-168)||(34107673-34107812)
chr4 (85-164)||(23255749-23255828)
chr4 (72-231)||(25504327-25504484)
chr4 (76-167)||(30940719-30940809)
chr4 (31-242)||(46391220-46391430)
chr4 (31-132)||(50483211-50483312)
chr4 (68-215)||(16957570-16957717)
chr4 (31-231)||(53170504-53170698)
chr4 (108-251)||(12918267-12918411)
chr4 (31-126)||(7536592-7536687)
chr4 (85-212)||(50462881-50463008)
chr4 (87-251)||(12053460-12053623)
chr4 (92-220)||(45385988-45386116)
chr4 (31-122)||(53098412-53098503)
chr4 (85-139)||(6865828-6865882)
chr4 (91-148)||(34536931-34536988)
chr4 (30-171)||(46440865-46441006)
chr4 (174-242)||(3330084-3330152)
chr4 (42-125)||(11562900-11562983)
chr4 (76-167)||(48656890-48656981)
chr4 (92-155)||(52022166-52022229)
chr4 (91-148)||(24719985-24720043)
chr4 (92-140)||(28883158-28883206)
[»] chr7 (29 HSPs)
chr7 (31-231)||(19277284-19277484)
chr7 (31-251)||(4501250-4501470)
chr7 (31-231)||(982940-983140)
chr7 (31-218)||(21326767-21326954)
chr7 (30-240)||(43856864-43857074)
chr7 (85-251)||(28517182-28517349)
chr7 (34-251)||(32584595-32584813)
chr7 (36-251)||(5825269-5825483)
chr7 (31-167)||(22197977-22198113)
chr7 (31-167)||(22239708-22239844)
chr7 (31-231)||(27521462-27521662)
chr7 (31-251)||(45613737-45613958)
chr7 (31-231)||(24527580-24527780)
chr7 (30-167)||(10905108-10905244)
chr7 (72-165)||(30216040-30216133)
chr7 (85-231)||(3676684-3676831)
chr7 (31-157)||(42295174-42295300)
chr7 (85-210)||(25186873-25186998)
chr7 (30-151)||(40726476-40726597)
chr7 (30-167)||(9281112-9281248)
chr7 (30-167)||(9292083-9292219)
chr7 (31-120)||(48539172-48539261)
chr7 (91-170)||(2904416-2904495)
chr7 (85-155)||(34772826-34772896)
chr7 (30-125)||(10032193-10032288)
chr7 (112-158)||(26770469-26770515)
chr7 (44-166)||(47679129-47679250)
chr7 (200-251)||(10905264-10905317)
chr7 (31-99)||(5972264-5972332)
[»] chr6 (20 HSPs)
chr6 (31-251)||(4206491-4206712)
chr6 (30-251)||(34304486-34304708)
chr6 (42-251)||(33220606-33220816)
chr6 (43-251)||(959583-959792)
chr6 (31-218)||(45606-45793)
chr6 (101-243)||(357621-357763)
chr6 (85-251)||(17249200-17249367)
chr6 (31-236)||(34415427-34415632)
chr6 (35-150)||(4165919-4166034)
chr6 (111-251)||(28543446-28543587)
chr6 (85-165)||(29338061-29338141)
chr6 (85-235)||(28008899-28009052)
chr6 (35-166)||(34554258-34554389)
chr6 (83-167)||(34168911-34168995)
chr6 (30-165)||(24016327-24016462)
chr6 (31-163)||(28625921-28626054)
chr6 (128-251)||(32115777-32115901)
chr6 (93-251)||(12401384-12401543)
chr6 (101-165)||(3714978-3715042)
chr6 (30-129)||(26225597-26225696)
[»] scaffold0490 (1 HSPs)
scaffold0490 (31-231)||(6325-6524)
[»] scaffold0148 (1 HSPs)
scaffold0148 (31-243)||(33241-33452)
[»] chr2 (27 HSPs)
chr2 (31-231)||(4412982-4413182)
chr2 (31-251)||(17344629-17344850)
chr2 (31-231)||(9685331-9685531)
chr2 (31-231)||(41867824-41868024)
chr2 (85-243)||(5532464-5532622)
chr2 (71-251)||(19161678-19161859)
chr2 (110-243)||(44686490-44686622)
chr2 (31-167)||(2888507-2888643)
chr2 (85-251)||(23484833-23485000)
chr2 (101-251)||(27502423-27502573)
chr2 (30-251)||(28224990-28225212)
chr2 (31-251)||(18744849-18745070)
chr2 (88-243)||(3825774-3825930)
chr2 (30-240)||(7760753-7760962)
chr2 (45-157)||(13147087-13147202)
chr2 (31-140)||(34814826-34814934)
chr2 (96-166)||(1296031-1296101)
chr2 (78-168)||(16351820-16351910)
chr2 (132-231)||(20142656-20142755)
chr2 (91-166)||(44720374-44720449)
chr2 (78-154)||(3968402-3968478)
chr2 (72-125)||(2886637-2886690)
chr2 (86-139)||(11921218-11921271)
chr2 (42-139)||(33612555-33612652)
chr2 (31-119)||(20142753-20142841)
chr2 (107-154)||(5679345-5679392)
chr2 (86-165)||(29808121-29808199)
[»] chr8 (21 HSPs)
chr8 (72-243)||(500259-500430)
chr8 (31-251)||(35739882-35740102)
chr8 (31-243)||(24125019-24125231)
chr8 (85-251)||(39434712-39434879)
chr8 (30-217)||(38815284-38815471)
chr8 (31-170)||(6592566-6592705)
chr8 (30-251)||(25021709-25021931)
chr8 (31-239)||(8619805-8620013)
chr8 (36-251)||(3187965-3188181)
chr8 (109-231)||(37517163-37517285)
chr8 (85-158)||(8882372-8882445)
chr8 (78-251)||(10189581-10189755)
chr8 (72-139)||(6618316-6618383)
chr8 (85-167)||(4073580-4073662)
chr8 (107-165)||(22589336-22589394)
chr8 (85-170)||(28196237-28196322)
chr8 (91-155)||(4699920-4699983)
chr8 (101-148)||(10556292-10556339)
chr8 (121-187)||(6792257-6792323)
chr8 (92-148)||(39671170-39671226)
chr8 (101-165)||(42922109-42922173)
[»] chr3 (28 HSPs)
chr3 (33-231)||(44198760-44198958)
chr3 (31-251)||(53785700-53785921)
chr3 (35-251)||(7900853-7901070)
chr3 (30-251)||(39583124-39583346)
chr3 (34-167)||(37132979-37133112)
chr3 (31-164)||(52741495-52741628)
chr3 (85-167)||(26772803-26772885)
chr3 (30-206)||(3443253-3443429)
chr3 (45-243)||(54508288-54508486)
chr3 (85-166)||(46940751-46940832)
chr3 (92-251)||(38146108-38146268)
chr3 (31-146)||(32546786-32546901)
chr3 (42-155)||(7502003-7502117)
chr3 (86-251)||(13582555-13582721)
chr3 (43-251)||(49017966-49018175)
chr3 (30-135)||(52411903-52412008)
chr3 (31-189)||(25325020-25325180)
chr3 (104-156)||(45676778-45676830)
chr3 (42-212)||(3376675-3376846)
chr3 (85-188)||(37992377-37992480)
chr3 (187-251)||(29861944-29862009)
chr3 (30-158)||(4473052-4473179)
chr3 (68-140)||(38670887-38670959)
chr3 (31-243)||(5338634-5338850)
chr3 (85-155)||(35484684-35484754)
chr3 (31-140)||(51234607-51234716)
chr3 (30-154)||(26856755-26856879)
chr3 (31-167)||(38978779-38978915)
[»] chr1 (24 HSPs)
chr1 (30-251)||(34644556-34644778)
chr1 (31-251)||(29169689-29169909)
chr1 (30-243)||(4861893-4862106)
chr1 (31-231)||(28041043-28041243)
chr1 (72-231)||(19035479-19035638)
chr1 (31-160)||(21472994-21473123)
chr1 (44-251)||(45659542-45659751)
chr1 (31-155)||(22346886-22347010)
chr1 (42-249)||(2764481-2764688)
chr1 (31-167)||(2898693-2898832)
chr1 (31-167)||(20259777-20259913)
chr1 (31-167)||(31737303-31737439)
chr1 (30-152)||(50314619-50314741)
chr1 (89-218)||(25375762-25375891)
chr1 (92-167)||(50161397-50161472)
chr1 (78-154)||(15584912-15584988)
chr1 (101-167)||(42919921-42919986)
chr1 (85-189)||(16500079-16500183)
chr1 (92-163)||(23043929-23044000)
chr1 (30-135)||(38731599-38731704)
chr1 (58-154)||(36486904-36487000)
chr1 (31-118)||(24177540-24177627)
chr1 (108-154)||(35387653-35387699)
chr1 (85-157)||(7433268-7433340)
[»] scaffold0110 (1 HSPs)
scaffold0110 (86-247)||(47439-47600)
[»] scaffold1768 (1 HSPs)
scaffold1768 (31-251)||(79-300)
[»] scaffold0009 (1 HSPs)
scaffold0009 (42-163)||(103108-103228)
[»] scaffold0119 (1 HSPs)
scaffold0119 (101-213)||(16195-16307)
[»] scaffold0186 (1 HSPs)
scaffold0186 (44-218)||(10364-10542)
[»] scaffold0031 (1 HSPs)
scaffold0031 (76-167)||(49447-49538)
[»] scaffold0493 (1 HSPs)
scaffold0493 (90-138)||(8525-8573)
[»] scaffold0224 (1 HSPs)
scaffold0224 (101-167)||(18345-18410)
[»] scaffold0470 (1 HSPs)
scaffold0470 (72-139)||(7634-7701)
[»] scaffold0514 (1 HSPs)
scaffold0514 (121-187)||(4300-4366)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 43129524 - 43129745
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43129524 ctttgaactctctgtagaaggtcaaaaacatctggtgttaggaaaccgaaaatgtcaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 43129623  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaa 229  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  43129624 tctcatgtttgaccactttgcttgacgcatcttttaggactgaatgtccaaccgtaaaagttccgacccctaatccaacaagtggtgaaaccccagtcaa 43129723  T
Q  230 gttcacacatgcatttttcctc 251  Q
     |||||||||||||||||||||    
T  43129724 tttcacacatgcatttttcctc 43129745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 33692127 - 33691950
Alignment:
Q  75 ccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaat 174  Q
    |||||| || ||||||||||||||| |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| ||   |    
T  33692127 ccgaaagtgtcaaaagcaaatggtacaaaagcatgttgattgtcataacacgttttgtcatgtttggccactttgcttgacgcagcttttaggcctgcct 33692028  T
Q  175 gtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    |||| ||||||||||  | ||||||||| || |||||||||||| || ||||||||| ||||||||||| ||||||||    
T  33692027 gtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttttcctc 33691950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 35310483 - 35310660
Alignment:
Q  75 ccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaat 174  Q
    |||||| || |||||||| |||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||  |   |    
T  35310483 ccgaaagtgtcaaaagcagatggtataaaagcatgttgattgtcagaacatgctttctcatgtttggccactttgcttgacgcatcttttagggttgtct 35310582  T
Q  175 gtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    |||| ||||||||||  | ||||||||| || |||||||||||| ||||| |||||| ||||||||||| ||||||||    
T  35310583 gtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccaatcaagtccacacatgcatgttttcctc 35310660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 37873755 - 37873619
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||||||||||||| ||| ||||||  ||| || || ||| || ||||||||||||||| |||||||||||||||||||||||||| ||    
T  37873755 ctttgaactctatgtagaaggtcaacaacctctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctt 37873656  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttag 166  Q
    ||||||||||||||||||||||||||||| |||||||    
T  37873655 tctcatgtttggccactttgcttgacgcaacttttag 37873619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 251
Target Start/End: Original strand, 27336738 - 27336905
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    ||||||||||||||| ||||  |||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||   ||||| |  ||    
T  27336738 caaaagcaaatggtataaaagtatgttgattgtcagaacacgatttctcatgtttgaccactttgcttgacgcaacttttagggctgtctgtcctattgt 27336837  T
Q  185 aaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    |||||  |  |||||||| || |||||||||||| |||||||||||| ||||||||||| ||||||||    
T  27336838 aaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctc 27336905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 14423723 - 14423869
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||  |   ||||| || ||    
T  14423723 caaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgttcggtcactttgcttgacgcattttttagggttgcctgtcctacggt 14423822  T
Q  185 aaaagttcagacccctaatccaacaagtggtgaagccccagtcaagt 231  Q
     |||| || ||| |||||||| |||||||||||| ||||| ||||||    
T  14423823 taaaggtccgacacctaatcccacaagtggtgaaaccccaatcaagt 14423869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 13167027 - 13166890
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||| ||||| ||||||||||||| |   |||| |  ||| || |||||| || ||||||||||||||| |||| ||||||||||||||||||||| ||    
T  13167027 ctttggactctatgtagaaggtcaacagtctctgatgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctt 13166928  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    |||||||||| ||||||||||||||||||  |||||||    
T  13166927 tctcatgtttagccactttgcttgacgcagattttagg 13166890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 25663149 - 25663012
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||| ||||| |||||||| |||| ||| |||| |  ||| || | |||| || ||||||||||||||| ||||||||||||||| |||||||||| ||    
T  25663149 ctttggactctatgtagaagatcaacaacttctgatgctaggaagctgaaagtgtcaaaagcaaatggtataaaaacatgttgattatcagaacacgctt 25663050  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    |||||||||||||||||||| |||| ||| ||||||||    
T  25663049 tctcatgtttggccactttgtttgatgcagcttttagg 25663012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 251
Target Start/End: Complemental strand, 32269859 - 32269692
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    ||||||||||||||| |||| | ||||||||||||||||||  ||||||||||||| |||||||| |||| ||| ||||||||  |  |||||| ||| |    
T  32269859 caaaagcaaatggtataaaagcgtgttgattgtcagaacacactttctcatgtttgaccactttggttgatgcagcttttagggttgcatgtcctaccat 32269760  T
Q  185 aaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    |||||  | ||| |||||| | | |||||||||| ||||||||||||  |||||||||| ||||||||    
T  32269759 aaaaggcccgacacctaattccagaagtggtgaaaccccagtcaagtctacacatgcatgttttcctc 32269692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 3114238 - 3114092
Alignment:
Q  72 aaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggacta 171  Q
    ||||| ||| || ||||| ||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||| |||| ||| |||||||| ||     
T  3114238 aaaccaaaagtgtcaaaaacaaatggtataaaaacatgttgactgtcagaacatgctttctcatgtttggccactttgtttgatgcaacttttagggctg 3114139  T
Q  172 aatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaa 218  Q
      ||||| ||||||||||  | |||||||||||| |  |||||||||    
T  3114138 cctgtcctaccgtaaaagccccgacccctaatcccatgagtggtgaa 3114092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 15292087 - 15292006
Alignment:
Q  86 aaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||    
T  15292087 aaaaacaaattgtataaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgtttgacgccacttttagg 15292006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 247
Target Start/End: Complemental strand, 26212644 - 26212483
Alignment:
Q  86 aaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgta 185  Q
    |||| ||||||||| |||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||     ||||||  ||    
T  26212644 aaaaacaaatggtataaaagcatgttgatcgtcagaatacgctttctcatgtttggccactttgcttgacgcaacttttagaactgccattccaacgata 26212545  T
Q  186 aaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcattttt 247  Q
    |||| ||  || |||||||  ||||||| |||| |||||||||| |  ||||||||||||||    
T  26212544 aaaggtccaacacctaatctcacaagtgatgaaaccccagtcaaatctacacatgcattttt 26212483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 32230586 - 32230450
Alignment:
Q  68 tagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||||||| ||| || | || ||| |||||| |||| | |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||      
T  32230586 tagaaaaccaaaagtgtcgaacgcagatggtataaaagcttgttgattgtcagaacacattttctcatgtttggtcactttgcttgacgcaacttttaaa 32230487  T
Q  168 actaaatgtccaaccgtaaaagttcagacccctaatc 204  Q
     |||  ||||  ||||||||||||| |||||||||||    
T  32230486 gctacttgtcttaccgtaaaagttctgacccctaatc 32230450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 42921690 - 42921802
Alignment:
Q  33 tgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttct 132  Q
    |||||||| ||||||||| ||| ||| ||||||  ||| ||||||||| || || |||||||||||| |||| |||||||||||||||||||||||||||    
T  42921690 tgaactctatgtagaaggccaacaacctctggtgctaggaaaccgaaagtgtcataagcaaatggtataaaagcatgttgattgtcagaacacgttttct 42921789  T
Q  133 catgtttggccac 145  Q
    | |||||| ||||    
T  42921790 cgtgtttgaccac 42921802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 34335329 - 34335452
Alignment:
Q  32 ttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttc 131  Q
    ||||||||| ||||||||||||| | | |||||| | |||||  ||||| || ||||| ||||||||| |||| ||||||||||||||| ||||| ||||    
T  34335329 ttgaactctatgtagaaggtcaacagcctctggtgtcagaaagtcgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcaggacacgctttc 34335428  T
Q  132 tcatgtttggccactttgcttgac 155  Q
    ||||||||||||  ||||||||||    
T  34335429 tcatgtttggcccttttgcttgac 34335452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 35456001 - 35456159
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    |||||||||| |||| |||| |||||||||||| |||||||| ||||||||||||| ||| ||| ||| || || ||||| || |||  |  || |||||    
T  35456001 caaaagcaaaaggtataaaagcatgttgattgttagaacacgctttctcatgtttgaccattttacttaacacaactttttgggctacctaccctaccgt 35456100  T
Q  185 aaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat 243  Q
    |||||  | |||||||||||| || |||||  || |||| ||||||| |||||||||||    
T  35456101 aaaaggccggacccctaatcctacgagtggcaaaaccccggtcaagtccacacatgcat 35456159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 8858977 - 8859034
Alignment:
Q  101 aaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgca 158  Q
    |||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||    
T  8858977 aaaaacatgttgattgtcagaacacgctttctcatgtttgactactttgcttgacgca 8859034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 38875629 - 38875765
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    ||||||||||  |||||||||||  | | ||||||  ||| || | |||| || ||||| ||||||||| |||||||||||||||||||||||||  |||    
T  38875629 tttgaactctacgtagaaggtcagcagcctctggtgctaggaagctgaaagtgtcaaaaacaaatggtacaaaaacatgttgattgtcagaacacacttt 38875728  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||||||||| | ||||| |||| |||  |||||||    
T  38875729 ctcatgtttggtcgctttgtttgatgcagtttttagg 38875765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 433371 - 433504
Alignment:
Q  119 agaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaa 218  Q
    |||||||| |||||||||||||||||||||||||||| || |||||| |  |   | ||| ||||||||||  |  |||| ||| || ||| ||||||||    
T  433371 agaacacgctttctcatgtttggccactttgcttgacacagcttttaaggttgtctatcctaccgtaaaagcccctacccttaaacccacaggtggtgaa 433470  T
Q  219 gccccagtcaagttcacacatgcat-ttttcctc 251  Q
     |||| ||||||| ||||||||||| ||||||||    
T  433471 accccggtcaagtccacacatgcatattttcctc 433504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 8100603 - 8100737
Alignment:
Q  91 caaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagt 190  Q
    ||||||||| |||| |||||  ||||||| |||||||||||||||||||| ||| ||| ||||| ||| | ||||||  |  |||||| ||  | |||||    
T  8100603 caaatggtataaaagcatgtaaattgtcacaacacgttttctcatgtttgaccattttacttgatgcagcgtttagggatgcatgtcctactattaaagt 8100702  T
Q  191 tcagacccctaatccaacaagtggtgaagccccag 225  Q
     | ||| | |||||| |||||||||||| ||||||    
T  8100703 cccgactcttaatcccacaagtggtgaaaccccag 8100737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 9829407 - 9829272
Alignment:
Q  92 aaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagtt 191  Q
    |||||||| |||| |||||||||||||| ||||| |||| ||||| || |||||||||||| ||||| |||||||| |||  | ||  ||  |||||| |    
T  9829407 aaatggtataaaagcatgttgattgtcaaaacacattttatcatg-ttagccactttgctt-acgcaacttttagggctatctatcttactataaaagat 9829310  T
Q  192 cagacccctaatccaacaagtggtgaagccccagtcaa 229  Q
    | ||| |||||||  |||||||||||| || |||||||    
T  9829309 ccgactcctaatcttacaagtggtgaaaccgcagtcaa 9829272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 14436545 - 14436605
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccacttt 148  Q
    ||||| |||||| || |||||||||||||||   |||||||||||| |||||||||||||||||    
T  14436545 caaaaacaaatgatataaaaacatgttgatt---agaacacgttttttcatgtttggccacttt 14436605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 430647 - 430686
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaaca 124  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  430647 caaaagcaaatggtataaaagcatgttgattgtcagaaca 430686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 7143767 - 7143805
Alignment:
Q  101 aaaaacatgttgattgtcagaacacgttttctcatgttt 139  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  7143767 aaaaacatgttgattgttaaaacacgttttctcatgttt 7143805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 22188771 - 22188687
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgatt 115  Q
    |||||||||| ||||||||||||| | | ||||||  || |||| ||||| || ||||| ||||| ||| |||| ||||||||||    
T  22188771 tttgaactctatgtagaaggtcaacagcctctggtgctaaaaaatcgaaagtgtcaaaaacaaatagtataaaatcatgttgatt 22188687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 132375 - 132599
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    |||| |||||||||||||| ||||| ||  |||| | |||| ||||||||| ||  |||| ||||||||| |||| ||||||||||||||||||||| ||    
T  132375 ctttaaactctgtgtagaatgtcaacaatctctgatattaggaaaccgaaagtgtaaaaaacaaatggtataaaagcatgttgattgtcagaacacgatt 132474  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtcc--aaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtc 227  Q
    |||||||||| |||| ||||||||||||| |||||||| ||   |||||   ||||||||||| | ||||||||||||||||||||||||| ||||||||    
T  132475 tctcatgttttgccattttgcttgacgcagcttttagggctgcctgtcctacaccgtaaaagtcccgacccctaatccaacaagtggtgaaaccccagtc 132574  T
Q  228 aagttcacacatgcat-ttttcctc 251  Q
    |||||||||||||||| ||||||||    
T  132575 aagttcacacatgcatattttcctc 132599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 30 - 243
Target Start/End: Complemental strand, 56462223 - 56462011
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||||||||||||| ||| ||||||  ||| ||||| ||| || | ||| ||||||||| |||||||||||||||||||||||||| ||    
T  56462223 ctttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtctaaaacaaatggtataaaaacatgttgattgtcagaacacgctt 56462124  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaa 229  Q
    | |||||||| ||||||||| |||||||| ||||||||      | | |||||||||||||   ||||||||||||||||| ||||||| || |||||||    
T  56462123 tatcatgttt-gccactttgtttgacgcaacttttagggtggtctatacaaccgtaaaagtctcgacccctaatccaacaaatggtgaaacctcagtcaa 56462025  T
Q  230 gttcacacatgcat 243  Q
    || |||||||||||    
T  56462024 gtccacacatgcat 56462011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 85 - 251
Target Start/End: Original strand, 53619631 - 53619798
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |   ||||| || ||    
T  53619631 caaaaacaaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcagcttttagggttgcctgtcctactgt 53619730  T
Q  185 aaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    |||||  |  ||| |||| || |||||||||||| |||||||||||| ||||||||||| ||||||||    
T  53619731 aaaagcccccacctctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctc 53619798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 600808 - 600684
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| |||||| |||| ||||||||| || ||||||||||||||| |||| |||||| ||||| ||||||||||||    
T  600808 tttgaactctatgtagaaggtcaacaacctctggtgttaggaaaccgaaagtgacaaaagcaaatggtataaaagcatgttaattgttagaacacgtttt 600709  T
Q  131 ctcatgtttggccactttgcttgac 155  Q
    ||||||||||| |||||||||||||    
T  600708 ctcatgtttggtcactttgcttgac 600684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 251
Target Start/End: Original strand, 31847132 - 31847299
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    ||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||| ||||||||||||||||| |||||||| ||   ||||| || ||    
T  31847132 caaaagcaaatggtaaaaaaacatgttgactgtcagaacatggtttctcatgtttgaccactttgcttgacgcagcttttagggctgcctgtcctactgt 31847231  T
Q  185 aaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    |||||  |  |||||||| || |||||||||||| ||| |||||||| ||||||||||| ||||||||    
T  31847232 aaaagcccccacccctaaacccacaagtggtgaaaccctagtcaagtccacacatgcatgttttcctc 31847299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 251
Target Start/End: Complemental strand, 50001005 - 50000820
Alignment:
Q  68 tagaaaaccgaaaatgccaaaagcaaatggtagaaaaa-catgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttag 166  Q
    |||||| || ||| || ||||||||||| |||  |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  50001005 tagaaagccaaaagtgtcaaaagcaaattgtattaaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttgcttgacgcagcttttag 50000906  T
Q  167 gactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
      ||   ||||| ||||||||||  |  |||||| | || |||||||||||| |||||||||||| ||||||||||| ||||||||    
T  50000905 agctgtctgtcctaccgtaaaagcccccaccccttaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctc 50000820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 26521478 - 26521700
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||| | ||||||||||||| | | ||||||  ||| ||||| ||| ||   |||||| ||| || |||| |||||||||||||| |||||||||    
T  26521478 ctttgaactgtatgtagaaggtcaacagcctctggtgctaggaaaccaaaagtgttgaaagcatatgatataaaagcatgttgattgtcataacacgttt 26521577  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaa 229  Q
    | |||||||| ||||||||| |||||||| ||||||||  |   ||||| ||| |||||| || |||||||||||| ||||||| |||| | ||||||||    
T  26521578 tttcatgtttagccactttgtttgacgcaacttttagggttgtttgtcctaccataaaaggtctgacccctaatcccacaagtgatgaaactccagtcaa 26521677  T
Q  230 gttcacacatgcat-ttttcctc 251  Q
    || || |||||||| ||||||||    
T  26521678 gtccatacatgcatgttttcctc 26521700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 251
Target Start/End: Complemental strand, 55933533 - 55933357
Alignment:
Q  76 cgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatg 175  Q
    ||||| || ||||||||||||||| |||| |||||||||||| ||||||   |||||||||||||||||||||| |||||||| |||||||| || | ||    
T  55933533 cgaaagtgtcaaaagcaaatggtataaaagcatgttgattgttagaacaaactttctcatgtttggccactttgtttgacgcaacttttagggctgactg 55933434  T
Q  176 tccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    ||| ||||||||||  | ||||| ||| || ||||| |||||| |||| || || |||| |||| ||| ||||||||    
T  55933433 tcctaccgtaaaagccctgacccttaaacccacaaggggtgaaaccccggttaaattcagacattcatgttttcctc 55933357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 34107812 - 34107673
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcaga--acacgtt 128  Q
    |||||||||| ||||||||||||| | | ||||||  ||| ||| ||||| || ||||| ||||||||| ||||||||||||||| || ||  |||||||    
T  34107812 tttgaactctatgtagaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaaacaaatggtataaaaacatgttgattatctgaacacacgtt 34107713  T
Q  129 ttctcatgtttggccactttgcttgacgcatcttttagga 168  Q
    ||||||||||||||||||| | ||||||||  ||||||||    
T  34107712 ttctcatgtttggccacttcgtttgacgcaatttttagga 34107673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 23255749 - 23255828
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatctttt 164  Q
    ||||| ||||||||| |||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  23255749 caaaaacaaatggtataaaagcatgttaattgtcagaacacgctttctcatgtttggccactttgcttgacgcaactttt 23255828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 231
Target Start/End: Original strand, 25504327 - 25504484
Alignment:
Q  72 aaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggacta 171  Q
    ||||| |||||| |||||||||| |||| |||||||||| |||||| |||||||||||||||||||||| ||| ||||||||| ||| | ||||||  |     
T  25504327 aaaccaaaaatgtcaaaagcaaacggtataaaaacatgtcgattgttagaacacgttttctcatgtttgacca-tttgcttgatgcaac-tttagggttg 25504424  T
Q  172 aatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagt 231  Q
      ||||  ||||||||||  | ||| |||||||| |||||||||||| || |||||||||    
T  25504425 cctgtcataccgtaaaaggcctgacgcctaatcccacaagtggtgaaacctcagtcaagt 25504484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 30940809 - 30940719
Alignment:
Q  76 cgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||| || ||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||    
T  30940809 cgaaagtgtcaaaagcaa-tggtataaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttacttgacgcaacttttagg 30940719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 242
Target Start/End: Complemental strand, 46391430 - 46391220
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||| | ||||||||||||| ||| |||  |  ||| ||| ||||||||  | |||||| ||||| ||||||||||||  ||| |||||| |||||    
T  46391430 tttgaactttatgtagaaggtcaacaacctctactgataggaaatcgaaaatgttacaagcaa-tggtataaaaacatgttggctgtgagaacatgtttt 46391332  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    ||| |||||  || ||||| | |||| | |||||||| | | || ||| |||||||||| || |||| ||||||| |||||||||||| ||||| ||||     
T  46391331 ctcgtgtttaaccgctttgttcgacgtagcttttaggtcaacatatcctaccgtaaaagatccgacctctaatcctacaagtggtgaaaccccaatcaaa 46391232  T
Q  231 ttcacacatgca 242  Q
    ||||||||||||    
T  46391231 ttcacacatgca 46391220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 50483312 - 50483211
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| ||||||  ||| ||||||||| || | ||||||||||||| |||| ||||||||||||||||| ||| |||    
T  50483312 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcgaaagcaaatggtataaaatcatgttgattgtcagaagacgcttt 50483213  T
Q  131 ct 132  Q
    ||    
T  50483212 ct 50483211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 16957570 - 16957717
Alignment:
Q  68 tagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    |||||||| |||| || ||||||||||||||| | || |||||||||| ||||| |||  |||||||||||||| || ||||||  ||||| ||||||||    
T  16957570 tagaaaactgaaagtgtcaaaagcaaatggtatataagcatgttgattatcagagcacactttctcatgtttggtcattttgctctacgcaacttttagg 16957669  T
Q  168 actaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggt 215  Q
    |||   | ||| || |||| ||  | ||||||||||||||||||||||    
T  16957670 actgcctatcctactgtaagaggcccgacccctaatccaacaagtggt 16957717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 231
Target Start/End: Original strand, 53170504 - 53170698
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| | | ||||||  ||| ||||||||| || |||||||||||       || |||||||| |||||||||||| |||    
T  53170504 tttgaactctatgtagaaggtcaacagcctctggtgctagcaaaccgaaagtgtcaaaagcaaatc------aagcatgttgactgtcagaacacgcttt 53170597  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    |||||||||||| ||||| | | || |  |||||||| ||   ||||  || ||||||| || ||| |||||||| || ||||||||| |||||||||||    
T  53170598 ctcatgtttggctactttacctaacacgacttttagggctgcctgtcatactgtaaaaggtccgacacctaatcccacgagtggtgaaaccccagtcaag 53170697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 251
Target Start/End: Complemental strand, 12918411 - 12918267
Alignment:
Q  108 tgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaa 207  Q
    ||||||||||||||||||| ||||| ||||||| |||||||| |||||||| ||||||||  |   ||||| ||||||||||  | ||  | |||||| |    
T  12918411 tgttgattgtcagaacacgatttcttatgtttgaccactttgtttgacgcaacttttagggttgtttgtcctaccgtaaaagccccgaatcttaatccca 12918312  T
Q  208 caagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    |||||| |||| | |||||||| | ||||||||||| ||||||||    
T  12918311 caagtgatgaaactccagtcaactacacacatgcatgttttcctc 12918267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 7536687 - 7536592
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacg 126  Q
    |||||||||| ||||||||||||| ||| ||||||  ||| |||| |||| || ||||| ||||| ||| ||||||||||||||||||| ||||||    
T  7536687 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaactgaaattgtcaaaaacaaattgtataaaaacatgttgattgtcaaaacacg 7536592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 50463008 - 50462881
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    |||||||||||||||  ||| ||||||||||||| ||| ||  |||||||||||||| ||  |||||||||||| |||||| | ||   ||||| |||||    
T  50463008 caaaagcaaatggtatgaaagcatgttgattgtcggaagacactttctcatgtttggtcatcttgcttgacgcaacttttaaggctgtctgtcctaccgt 50462909  T
Q  185 aaaagttcagacccctaatccaacaagt 212  Q
    | |||| | ||| |||||||||||||||    
T  50462908 agaagtaccgacacctaatccaacaagt 50462881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 251
Target Start/End: Original strand, 12053460 - 12053623
Alignment:
Q  87 aaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaa 186  Q
    |||||||||| || |||||| | |||||||| |||||||| ||||||||||||| | |||||| |||||||| |||||||  ||   ||||| || ||||    
T  12053460 aaagcaaatgatataaaaacgttttgattgttagaacacgatttctcatgtttgacaactttgtttgacgcagcttttagagctgtttgtcctactgtaa 12053559  T
Q  187 aagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    ||||   |||||| |||||||| | ||||||| ||||| | | || ||||||||||| ||||||||    
T  12053560 aagt--cgacccccaatccaactaatggtgaaaccccaataatgtccacacatgcatgttttcctc 12053623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 45386116 - 45385988
Alignment:
Q  92 aaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagtt 191  Q
    |||||||| ||||| |  ||||||||||||||||| ||||| ||||||| ||||||| ||||||  | ||||||||  |  |||||| |||| |||||||    
T  45386116 aaatggtataaaaagaaattgattgtcagaacacgctttcttatgtttgaccactttccttgacttagcttttagggttgcatgtcctaccgcaaaagtt 45386017  T
Q  192 cagacccctaatccaacaagtggtgaagc 220  Q
      |  ||||||||| ||||||||||||||    
T  45386016 tcgggccctaatcccacaagtggtgaagc 45385988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 53098412 - 53098503
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaa 122  Q
    |||||||||| |||||||||| || ||| |||| |  ||| ||||| |||||| |||||| ||| |||  ||||||||||||||||||||||    
T  53098412 tttgaactctatgtagaaggttaacaacctctgatgctaggaaaccaaaaatgtcaaaaggaaacggttcaaaaacatgttgattgtcagaa 53098503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 6865882 - 6865828
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgttt 139  Q
    |||||||||||| || |||| ||||||||| |||||||||||||||||| |||||    
T  6865882 caaaagcaaatgatataaaagcatgttgatagtcagaacacgttttctcgtgttt 6865828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 34536988 - 34536931
Alignment:
Q  91 caaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccacttt 148  Q
    ||||| ||| ||||| ||||||||||||| |||||||||| |||||||||| ||||||    
T  34536988 caaatagtataaaaatatgttgattgtcataacacgttttttcatgtttggtcacttt 34536931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 46441006 - 46440865
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||| ||||| ||||||||||||  | | |||| |  ||| || |||||| || |||||||||||| || |||||| |||| ||||| |||||||  ||    
T  46441006 ctttggactctatgtagaaggtcagcagcttctgatgctaggaagccgaaagtgtcaaaagcaaatgatataaaaacgtgttaattgttagaacacactt 46440907  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggacta 171  Q
    | | ||||||| |||||||| ||||||   ||||||||||||    
T  46440906 ttttatgtttgaccactttgtttgacgttacttttaggacta 46440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 3330084 - 3330152
Alignment:
Q  174 tgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgca 242  Q
    ||||| ||||||||||  |  |||||||| || |||||||||||| |||||||||||| ||||||||||    
T  3330084 tgtcctaccgtaaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgca 3330152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 11562900 - 11562983
Alignment:
Q  42 tgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacac 125  Q
    |||||||| |||| ||| ||  || ||||||||||||||||| | |||| ||||| || |||| ||||||||||||| ||||||    
T  11562900 tgtagaagatcaacaacctcgagtgttagaaaaccgaaaatgtctaaagtaaatgatataaaagcatgttgattgtccgaacac 11562983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 48656981 - 48656890
Alignment:
Q  76 cgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||| || ||||| ||||||||| |||||||| ||||||| || |||||  ||||||||||||| ||| ||| ||||| | | ||||||||    
T  48656981 cgaaagtgtcaaaaacaaatggtataaaaacattttgattgacataacacactttctcatgtttgtccattttacttgatgaaacttttagg 48656890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 52022166 - 52022229
Alignment:
Q  92 aaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgac 155  Q
    |||||||| |||||||||| || ||||||||||| || |||||| ||||| ||||||| |||||    
T  52022166 aaatggtataaaaacatgtcgactgtcagaacactttctctcatttttggtcactttgattgac 52022229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 24719985 - 24720043
Alignment:
Q  91 caaatggtagaaaaacatgttgattgtcagaacacg-ttttctcatgtttggccacttt 148  Q
    |||||| || ||||||||||||||||||||||| || |||| ||||||||| |||||||    
T  24719985 caaatgatataaaaacatgttgattgtcagaacgcgtttttatcatgtttgaccacttt 24720043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 28883206 - 28883158
Alignment:
Q  92 aaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttg 140  Q
    ||||| || |||||||||||| ||||  |||||||||||||||||||||    
T  28883206 aaatgatataaaaacatgttggttgttcgaacacgttttctcatgtttg 28883158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 31 - 231
Target Start/End: Original strand, 19277284 - 19277484
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| ||||||  ||| ||||||||| || ||||||||||||||| |||| ||||||||||||||||||||| |||    
T  19277284 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 19277383  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    |||||||||||| ||||||||||||||| |||||||||||   ||||| || | ||||| || ||  |||||||| |||||||||||| |||||||||||    
T  19277384 ctcatgtttggctactttgcttgacgcagcttttaggactgcctgtcctacggcaaaaggtctgaaacctaatccgacaagtggtgaaaccccagtcaag 19277483  T
Q  231 t 231  Q
    |    
T  19277484 t 19277484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 4501250 - 4501470
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| ||||||  ||||||||| ||| || |||||||||||  || |||| ||||||||||||||||||||| |||    
T  4501250 tttgaactctatgtagaaggtcaacaacctctggtgctagaaaacc-aaagtgtcaaaagcaaattatataaaagcatgttgattgtcagaacacgcttt 4501348  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    ||||||||||||||||||| |||||||| ||||||||  |   ||||| || |||||||  | ||| |||||||| |||||||||||| |||||||||||    
T  4501349 ctcatgtttggccactttgtttgacgcagcttttagggttgtttgtcctacggtaaaaggcccgacacctaatcccacaagtggtgaaaccccagtcaag 4501448  T
Q  231 ttcacacatgcat-ttttcctc 251  Q
    |  |||||||||| ||||||||    
T  4501449 tctacacatgcatgttttcctc 4501470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 231
Target Start/End: Original strand, 982940 - 983140
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||| ||| ||| ||||||  ||||||||||||| |  ||||||||||||||| |||| ||||||||||||||||||||| |||    
T  982940 tttgaactctatgtagaaggccaacaacctctggtgctagaaaaccgaaagtatcaaaagcaaatggtataaaagcatgttgattgtcagaacacgattt 983039  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    |||||||||||||||||||||||||||| |||||| | ||   ||||| ||  |||||| ||  || |||||||| ||||||||| || ||| |||||||    
T  983040 ctcatgtttggccactttgcttgacgcagcttttatggctgcctgtcctacaataaaaggtcccacacctaatcccacaagtggttaaaccctagtcaag 983139  T
Q  231 t 231  Q
    |    
T  983140 t 983140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 21326954 - 21326767
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| |||| |||||||| | | ||||||  ||| ||| ||||| || ||||||||||||||| |||| ||||||||||||||||||||| |||    
T  21326954 tttgaactctatgtaaaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 21326855  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaa 218  Q
    |||||||||||||||||||||||||||  |||||||| ||   ||||| || ||||||| || ||| |||||||| ||||||||||||    
T  21326854 ctcatgtttggccactttgcttgacgcggcttttagggctgtttgtcctacggtaaaaggtccgacacctaatcccacaagtggtgaa 21326767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 240
Target Start/End: Original strand, 43856864 - 43857074
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||||||||||||| ||| |||||| |||| ||||| |||||| ||||||||||| ||| |||  |||||||||||||| |||||| ||    
T  43856864 ctttgaactctatgtagaaggtcaacaacctctggtgttaggaaaccaaaaatgtcaaaagcaaattgtataaacgcatgttgattgtcaaaacacgctt 43856963  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaa 229  Q
    |||||||| | ||||||||| |||||||||||||||    |   ||||| || |||||||  | |||||||||||| |||||||||||| |||| |||||    
T  43856964 tctcatgtctagccactttgattgacgcatcttttaatgttgtctgtcctactgtaaaagccccgacccctaatcccacaagtggtgaaacccccgtcaa 43857063  T
Q  230 gttcacacatg 240  Q
    || ||| ||||    
T  43857064 gtccacgcatg 43857074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 251
Target Start/End: Complemental strand, 28517349 - 28517182
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    ||||||||||||||| ||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||| ||||||||  |   ||||| || ||    
T  28517349 caaaagcaaatggtataaaaacatgttgattgtctaaacacgctttctcatgtttggccactttgcttgacgcagcttttagggttgtctgtcctactgt 28517250  T
Q  185 aaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    |||||  |  |||||||| || |||||||||||| |||||||||||| ||||||| ||| ||||||||    
T  28517249 aaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatacatgttttcctc 28517182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 32584595 - 32584813
Alignment:
Q  34 gaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctc 133  Q
    ||||||| | ||||||||||| ||| ||||||  ||| ||||  ||| || ||||||||||||||  |||| ||| ||||||||||||||||||||||||    
T  32584595 gaactctatctagaaggtcaacaacctctggtgctaggaaacataaagtgtcaaaagcaaatggtgtaaaagcatcttgattgtcagaacacgttttctc 32584694  T
Q  134 atgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttc 233  Q
    ||||||| |||||||| |||| |||  |||||||  |  |||||| |||||||||   | |||||||||||| ||||| |||||| ||| |||||||| |    
T  32584695 atgtttgaccactttgtttgatgcaatttttagggttgcatgtcctaccgtaaaatccccgacccctaatcccacaagaggtgaaacccgagtcaagtcc 32584794  T
Q  234 acacatgcat-ttttcctc 251  Q
    |||||||||| ||||||||    
T  32584795 acacatgcatgttttcctc 32584813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 5825269 - 5825483
Alignment:
Q  36 actctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcat 135  Q
    ||||| ||||||||||||| ||| ||||||  ||| |  |||||| || |||||| |||||||| ||||||||||||||||||| ||||||  || ||||    
T  5825269 actctatgtagaaggtcaacaacctctggtgctaggatgccgaaagtgtcaaaagtaaatggtataaaaacatgttgattgtcataacacgcattgtcat 5825368  T
Q  136 gtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcac 235  Q
    |||||  |||||||||||| ||| |||||||| ||   |||||  |||||||||    ||||||||| || |||||||||||| |||||||||||| |||    
T  5825369 gtttg--cactttgcttgatgcagcttttagggcttcctgtcctgccgtaaaagcctcgacccctaaacccacaagtggtgaaaccccagtcaagtccac 5825466  T
Q  236 acatgcat-ttttcctc 251  Q
    |||||||| ||||||||    
T  5825467 acatgcatgttttcctc 5825483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 22197977 - 22198113
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| |||| |  ||| ||||||||| || ||||||||||||||| |||||||||||||||||  ||||||  |||    
T  22197977 tttgaactctatgtagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgttggaacacacttt 22198076  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||||||||| |||||||||||||||  ||||||||    
T  22198077 ctcatgtttggtcactttgcttgacgccgcttttagg 22198113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 22239844 - 22239708
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| |||| |  ||| ||||||||| || ||||||||||||||| |||||||||||||||||  ||||||  |||    
T  22239844 tttgaactctatgtagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgttggaacacacttt 22239745  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||||||||| |||||||||||||||  ||||||||    
T  22239744 ctcatgtttggtcactttgcttgacgccgcttttagg 22239708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 231
Target Start/End: Original strand, 27521462 - 27521662
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| |||| |  ||| ||||| ||| || |||||| |||| ||| |||  |||||||||||||||||||||||||    
T  27521462 tttgaactctatgtagaaggtcaacaacctctgatgctaggaaaccaaaagtgtcaaaagtaaattgtataaatgcatgttgattgtcagaacacgtttt 27521561  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    |||||||||| |||||||| || ||||| |||||| |  |  |||||| ||||||||||  | ||| |||||||| |||| |||||||  | ||||||||    
T  27521562 ctcatgtttgaccactttgtttaacgcaacttttaagggtgcatgtcctaccgtaaaaggcccgacacctaatcccacaaatggtgaaatctcagtcaag 27521661  T
Q  231 t 231  Q
    |    
T  27521662 t 27521662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 45613958 - 45613737
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| |||||||||  || | | ||||||  | | ||||||||| || ||||| ||||||||| |||||||||||||||||||||||||  |||    
T  45613958 tttgaactctatgtagaaggctaacagcctctggtgcttggaaaccgaaagtgtcaaaatcaaatggtataaaaacatgttgattgtcagaacacacttt 45613859  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    | | ||||||| ||| || ||||||||| ||||||||  |   ||||| || | |||||  | ||| |||||||| |||||||||||| |||||||||||    
T  45613858 cccgtgtttggtcaccttacttgacgcaacttttagggttgtctgtcctacggaaaaaggcccgacacctaatcctacaagtggtgaaaccccagtcaag 45613759  T
Q  231 ttcacacatgcat-ttttcctc 251  Q
    |  |||||||||| ||||||||    
T  45613758 tctacacatgcatgttttcctc 45613737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 231
Target Start/End: Original strand, 24527580 - 24527780
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| |||||||||||||   | ||| ||  ||| |||| |||| || ||||||||||||||| |||| |||||||||||||||||||||||||    
T  24527580 tttgaactctatgtagaaggtcaaccgcctctcgtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgtttt 24527679  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    |||||||||  ||||||| |||||| |  |||||||| ||   ||||| || ||||||| || ||| |||||||| |||| || |||  ||| |||||||    
T  24527680 ctcatgttttcccactttacttgacactgcttttagggctgcctgtcctacggtaaaaggtccgacacctaatcccacaaatgatgagaccctagtcaag 24527779  T
Q  231 t 231  Q
    |    
T  24527780 t 24527780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 167
Target Start/End: Original strand, 10905108 - 10905244
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||||||||||||| |   ||||||  |||  |||| ||| || ||||||||||||||| |||  |||||||| ||||||||||| |||    
T  10905108 ctttgaactctatgtagaaggtcaacatactctggtgctaggcaaccaaaagtgtcaaaagcaaatggtataaag-catgttgagtgtcagaacactttt 10905206  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  10905207 tctcatatttggccactttgcttgacgcagcttttagg 10905244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 30216133 - 30216040
Alignment:
Q  72 aaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatctttta 165  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||| ||| ||||||||||||| ||||||    
T  30216133 aaaccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcaaaacacgctttctcatatttgaccattttgcttgacgcagctttta 30216040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 3676684 - 3676831
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggact-aaatgtccaaccg 183  Q
    ||||||||||||||| |||| ||| ||||| || |||||||| ||||| ||||||| ||||||||||||||||| |||||||| ||    ||||| || |    
T  3676684 caaaagcaaatggtataaaagcatattgatagtaagaacacgctttctgatgtttgaccactttgcttgacgcagcttttagggctggcctgtcctacgg 3676783  T
Q  184 taaaagttcagacccctaatccaacaagtggtgaagccccagtcaagt 231  Q
    ||||||  | ||| |||||||| |||||||||||| ||||||||||||    
T  3676784 taaaaggaccgacacctaatcccacaagtggtgaaaccccagtcaagt 3676831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 157
Target Start/End: Complemental strand, 42295300 - 42295174
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    ||||||| || ||||||||||||| |||  ||||| |||| ||||||||| |   |||| ||||||||| |||||||||||||||||||||| | | |||    
T  42295300 tttgaacgctatgtagaaggtcaacaacccctggtgttaggaaaccgaaagtataaaaaacaaatggtataaaaacatgttgattgtcagaagaagcttt 42295201  T
Q  131 ctcatgtttggccactttgcttgacgc 157  Q
    || ||||||||||| ||||||||||||    
T  42295200 cttatgtttggccattttgcttgacgc 42295174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 25186998 - 25186873
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    ||||||||||||||||||||||||||||||| || ||||||| ||||||||||| | ||||||| |||||| || ||||||||  |  |||||| || ||    
T  25186998 caaaagcaaatggtagaaaaacatgttgattatcggaacacgctttctcatgttagaccactttacttgacacaacttttagggttttatgtcctacggt 25186899  T
Q  185 aaaagttcagacccctaatccaacaa 210  Q
    ||||| || ||| |||||||| ||||    
T  25186898 aaaaggtccgacacctaatcccacaa 25186873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 40726597 - 40726476
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||| ||||| ||||||||||||| ||| |||| |  ||  || |||||| || ||||| ||||||||| ||||||||||||||||||||||||| |||    
T  40726597 ctttggactctatgtagaaggtcaacaacctctgatgctatgaagccgaaagtgtcaaaaacaaatggtataaaaacatgttgattgtcagaacacattt 40726498  T
Q  130 tctcatgtttggccactttgct 151  Q
    | | ||||||||||||||||||    
T  40726497 tattatgtttggccactttgct 40726476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 9281248 - 9281112
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||||||||||||| ||||||||||  ||| || |  |||||| ||||  ||||| ||| |||| |||||||||||| |||||||| ||    
T  9281248 ctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaacacgctt 9281149  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    |||||||||| || | ||||||||| ||| ||||||||    
T  9281148 tctcatgttt-gctagtttgcttgatgcagcttttagg 9281112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 9292219 - 9292083
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||||||||||||| ||||||||||  ||| || |  |||||| ||||  ||||| ||| |||| |||||||||||| |||||||| ||    
T  9292219 ctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatccaaatagtataaaagcatgttgattgttagaacacgctt 9292120  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    |||||||||| || | ||||||||| ||| ||||||||    
T  9292119 tctcatgttt-gctagtttgcttgatgcagcttttagg 9292083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 48539172 - 48539261
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcag 120  Q
    |||| ||||| |||||| | |||| | | ||||||  ||||||||||||| || ||||||||||||||| |||| |||||||||||||||    
T  48539172 tttggactctatgtagacgatcaacagcctctggtgctagaaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag 48539261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 2904416 - 2904495
Alignment:
Q  91 caaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggact 170  Q
    |||||| || |||| ||||||||||||| ||||| | ||||||||||||| | | ||||||||||| | |||||||||||    
T  2904416 caaatgatataaaatcatgttgattgtcggaacatgctttctcatgtttgactattttgcttgacgtaacttttaggact 2904495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 34772826 - 34772896
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgac 155  Q
    ||||||||||||||| |||||||| || |||||| ||||||  |||||||| |||||| |||||| |||||    
T  34772826 caaaagcaaatggtataaaaacatattaattgtccgaacacactttctcatatttggctactttgattgac 34772896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 10032288 - 10032193
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacac 125  Q
    ||||||||||| |||||||||| || |||||||  |  ||  || | ||||||  ||||||||||| ||| |||||||| ||||||||||||||||    
T  10032288 ctttgaactctatgtagaaggttaacaacatctaatgctaagaagctgaaaatatcaaaagcaaatagtataaaaacatattgattgtcagaacac 10032193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 26770469 - 26770515
Alignment:
Q  112 gattgtcagaacacgttttctcatgtttggccactttgcttgacgca 158  Q
    ||||||||||||||||||||||||||||  |||||||  ||||||||    
T  26770469 gattgtcagaacacgttttctcatgttttaccactttatttgacgca 26770515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 47679129 - 47679250
Alignment:
Q  44 tagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggcc 143  Q
    ||||||||||| ||| | || |  ||| |||||||||||| |||| |||||| ||| ||||  || |||||||| |||||||  |||||||| ||| | |    
T  47679129 tagaaggtcaacaacctgtgatgctaggaaaccgaaaatgtcaaacgcaaatagtataaaagtatattgattgtgagaacacactttctcatattttgtc 47679228  T
Q  144 actttgcttgacgcatcttttag 166  Q
    ||||||| ||||||| |||||||    
T  47679229 actttgc-tgacgcaacttttag 47679250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 10905264 - 10905317
Alignment:
Q  200 taatccaacaagtggtgaagccc-cagtcaagttcacacatgcat-ttttcctc 251  Q
    |||||||||||||||||||  || ||||||||||||||||||||| ||||||||    
T  10905264 taatccaacaagtggtgaaaacctcagtcaagttcacacatgcatgttttcctc 10905317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 5972332 - 5972264
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggta 99  Q
    |||||||||| ||||||||||||| ||| |||| |  |||||||  ||||||| ||||| |||||||||    
T  5972332 tttgaactctatgtagaaggtcaacaacctctgatactagaaaaatgaaaatgtcaaaaacaaatggta 5972264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 4206712 - 4206491
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| ||||||  ||| || |||||| || |||||||||||| || |||| |||||| |||||||||||||| |||    
T  4206712 tttgaactctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttcattgtcagaacacgcttt 4206613  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    ||||||||| |||||||||||||||||  |||||| | ||  |||||| |||||||||| || ||  |||||||| |||||||||||| |||||||||||    
T  4206612 ctcatgtttagccactttgcttgacgccacttttaaggctgcatgtcctaccgtaaaaggtctgatgcctaatcccacaagtggtgaaaccccagtcaag 4206513  T
Q  231 ttcacacatgcat-ttttcctc 251  Q
    |  |||||||||| ||||||||    
T  4206512 tctacacatgcatgttttcctc 4206491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 34304486 - 34304708
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||| ||||| ||||||||||||| | |||||| |  ||| || || ||| || ||||||||||||||| |||| ||||||||||||||||||||| ||    
T  34304486 ctttggactctatgtagaaggtcaacatcatctgatgctaggaagcccaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctt 34304585  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaa 229  Q
    ||||||||||||  | ||||||||||||| |||||||| |||  ||||||||||||||||  | ||| ||||| || |||||||||||| ||||| ||||    
T  34304586 tctcatgtttggttattttgcttgacgcagcttttagggctagctgtccaaccgtaaaagccccgactcctaaacccacaagtggtgaaaccccaatcaa 34304685  T
Q  230 gttcacacatgcat-ttttcctc 251  Q
    || ||||||||||| ||||||||    
T  34304686 gtccacacatgcatgttttcctc 34304708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 251
Target Start/End: Complemental strand, 33220816 - 33220606
Alignment:
Q  42 tgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttgg 141  Q
    ||||||||||||| ||| || | |  ||| || |||||| || ||||||||||||||| |||| ||||||||||||||  ||||| ||||||||||||||    
T  33220816 tgtagaaggtcaacaacctcggatgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcaacacacgctttctcatgtttgg 33220717  T
Q  142 ccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgc 241  Q
    ||||||||||||| ||| |||||||  ||   ||||| ||||||||||  | ||||||||| || |||||||||||| |||||||||| |||||||||||    
T  33220716 ccactttgcttgatgcagcttttagagctgtctgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaaattcacacatgc 33220617  T
Q  242 at-ttttcctc 251  Q
    || ||||||||    
T  33220616 atgttttcctc 33220606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 251
Target Start/End: Original strand, 959583 - 959792
Alignment:
Q  43 gtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggc 142  Q
    |||||||||||| ||| ||||||  ||| |||||||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||||||||| || ||    
T  959583 gtagaaggtcaacaacctctggtgctaggaaaccgaaaatgtcaaaaacaaatggtataaagacatgttgattgtcagaacacgttttctcatggttagc 959682  T
Q  143 cactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgca 242  Q
    ||||||||||||| || ||||||||  |   ||||| ||||||||||  | ||| |||||||| | |||||||||| |  || |||||| ||||||||||    
T  959683 cactttgcttgacacaacttttagggttgtttgtcctaccgtaaaaggcccgacacctaatcccataagtggtgaaacttcaatcaagtccacacatgca 959782  T
Q  243 t-ttttcctc 251  Q
    | ||||||||    
T  959783 tgttttcctc 959792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 45793 - 45606
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| | | ||||||  ||  ||||||||| || ||||| ||||||| | |||| |||||||||||||||||||||||||    
T  45793 tttgaactctatgtagaaggtcaacagcctctggtgctaagaaaccgaaagtgtcaaaaacaaatggaataaaagcatgttgattgtcagaacacgtttt 45694  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaa 218  Q
    ||||||||||  |||||||||||| ||| |||||||  ||   ||||| || ||||||| || ||| |||||||| ||||||||||||    
T  45693 ctcatgtttgatcactttgcttgatgcagcttttagagctgcctgtcctacggtaaaaggtccgacacctaatcccacaagtggtgaa 45606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 101 - 243
Target Start/End: Complemental strand, 357763 - 357621
Alignment:
Q  101 aaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccct 200  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||   ||||| ||||||||||  | |||||||    
T  357763 aaaagcatgttcattgtcagaacacgctttctcatgtttggccactttgcttgacgaagcttttagggctgcctgtcctaccgtaaaagcaccgacccct 357664  T
Q  201 aatccaacaagtggtgaagccccagtcaagttcacacatgcat 243  Q
    || || |||||||||||| | |||||||||| |||||||||||    
T  357663 aaacccacaagtggtgaaactccagtcaagtccacacatgcat 357621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 251
Target Start/End: Complemental strand, 17249367 - 17249200
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    ||||||||||||||| |||| ||||||||||||||||||||  |||||||||||||||||||||| |||||||| ||||||||  |   ||||| |||||    
T  17249367 caaaagcaaatggtataaaagcatgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcaacttttagggttgtttgtcctaccgt 17249268  T
Q  185 aaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    |||||  |  || || || || |||| ||||||| |||||||||||| ||||||||||| ||||||||    
T  17249267 aaaagcgcccactccgaaacccacaaatggtgaaaccccagtcaagtccacacatgcatattttcctc 17249200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 34415427 - 34415632
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| | |||||||||||   ||| |||| |||| ||||| ||| || ||||| ||||||| | |||| ||||||||||||||||||||  |||    
T  34415427 tttgaactctatatagaaggtcaactgcatttggtgttaggaaacctaaagtgtcaaaaacaaatggcataaaagcatgttgattgtcagaacacacttt 34415526  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    ||||||||| |||| ||||||||||||| ||| || |  |   | ||| ||||||||||| | |||||||||||||||  |||||||| ||||| |||||    
T  34415527 ctcatgtttcgccattttgcttgacgcagcttgtaaggatgcctatcctaccgtaaaagtcctgacccctaatccaacgtgtggtgaaaccccaatcaag 34415626  T
Q  231 ttcaca 236  Q
    ||||||    
T  34415627 ttcaca 34415632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 4166034 - 4165919
Alignment:
Q  35 aactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctca 134  Q
    |||||| ||||||||||||| ||| ||||||  ||| || |||||| || |||||||||||| || |||| ||||||||||||||||||||| |||||||    
T  4166034 aactctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttgattgtcagaacacgctttctca 4165935  T
Q  135 tgtttggccactttgc 150  Q
    ||||| ||||||||||    
T  4165934 tgtttagccactttgc 4165919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 251
Target Start/End: Original strand, 28543446 - 28543587
Alignment:
Q  111 tgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaa 210  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||||  |||||| | ||   ||||  ||||||||||| | |||| ||||||| ||||    
T  28543446 tgattttcaaaacacgatttctcatgtttggccactttgcttgacgcgacttttaaggctgcctgtcttaccgtaaaagtcctgacctctaatcccacaa 28543545  T
Q  211 gtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    |||||||| || ||||||| | ||||||||||| ||||||||    
T  28543546 gtggtgaaacctcagtcaaatccacacatgcatgttttcctc 28543587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 29338141 - 29338061
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatctttta 165  Q
    ||||||||||||||| || | |||||||||||| ||||||||||||||||||||||||  ||||||||||| |||||||||    
T  29338141 caaaagcaaatggtataagagcatgttgattgttagaacacgttttctcatgtttggcagctttgcttgacacatctttta 29338061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 28009052 - 28008899
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgtt---gattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaac 181  Q
    ||||||||||||||| |||| ||| ||   |||||| |||||| | ||||||||||||| || |||||||||||| | ||||||||  |  |||||| ||    
T  28009052 caaaagcaaatggtataaaaccatattcttgattgttagaacaagctttctcatgtttgaccgctttgcttgacgtagcttttagggttgcatgtcctac 28008953  T
Q  182 cgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcac 235  Q
    ||||||||  | |||||||||||| || ||||||||| | ||||||||||||||    
T  28008952 cgtaaaagccccgacccctaatcccacgagtggtgaaactccagtcaagttcac 28008899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 34554389 - 34554258
Alignment:
Q  35 aactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctca 134  Q
    |||||| ||||||| ||||| | ||||||||  ||| || |||||  || |||||| |||||||| |||||||| |||||| |||||||||| |||||||    
T  34554389 aactctatgtagaaagtcaatagcatctggtgctaggaagccgaatgtgtcaaaagtaaatggtataaaaacatcttgattatcagaacacgctttctca 34554290  T
Q  135 tgtttggccactttgcttgacgcatcttttag 166  Q
    ||||||| |  ||||||||||||| |||||||    
T  34554289 tgtttggtcgttttgcttgacgcaacttttag 34554258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 34168911 - 34168995
Alignment:
Q  83 gccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||||||||||||||| |||| ||||||| |||||  |||| | |||||||||||||||||||||||||||||||  |||||||    
T  34168911 gccaaaagcaaatggtataaaagcatgttgcttgtccaaacatgctttctcatgtttggccactttgcttgacgcaaattttagg 34168995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 24016327 - 24016462
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| |||| ||  |||| ||||||||||  ||| ||||| ||| |  ||| ||||||||||| ||||||||||||||||| |||||| | ||    
T  24016327 ctttgaactctatgtaaaaaatcaacaacatctggtgctaggaaaccaaaactatcaatagcaaatggtataaaaacatgttgattgtgagaacaagctt 24016426  T
Q  130 tctcatgtttggccactttgcttgacgcatctttta 165  Q
    ||||||||||| | | ||| ||||| ||| ||||||    
T  24016427 tctcatgtttgactattttacttgatgcaactttta 24016462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 28625921 - 28626054
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaaca-tgttgattgtcagaacacgttt 129  Q
    |||||||| | |||||||| |||| ||| ||||||  ||| |||  |||| ||  |||| ||||||||| ||||| | ||||||||||||||||||||||    
T  28625921 tttgaactttatgtagaagctcaacaacctctggtgctaggaaattgaaagtgtaaaaaacaaatggtataaaaaaaatgttgattgtcagaacacgttt 28626020  T
Q  130 tctcatgtttggccactttgcttgacgcatcttt 163  Q
    |||| ||||| ||||| || ||||||||| ||||    
T  28626021 tctcgtgtttagccaccttacttgacgcagcttt 28626054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 251
Target Start/End: Original strand, 32115777 - 32115901
Alignment:
Q  128 tttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtc 227  Q
    |||||||||||||||||||||| |||||||| |||||| | ||  |||||| | |||||||   | ||| |||||||| | ||||| |||| |||| |||    
T  32115777 tttctcatgtttggccactttgtttgacgcaacttttaaggctgcatgtcctaacgtaaaatgcccgacacctaatcccataagtgatgaaaccccggtc 32115876  T
Q  228 aagttcacacatgcat-ttttcctc 251  Q
    ||||  |||||||||| ||||||||    
T  32115877 aagtctacacatgcatgttttcctc 32115901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 251
Target Start/End: Original strand, 12401384 - 12401543
Alignment:
Q  93 aatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttc 192  Q
    ||||||| | || ||||||||||  || |||||| | ||| |||||||||||||||| |||||||| |||||||  ||   ||||| ||| ||||||  |    
T  12401384 aatggtatataagcatgttgattagcaaaacacgctatcttatgtttggccactttgtttgacgcaacttttagtgctgcttgtcctaccataaaagccc 12401483  T
Q  193 agacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
     || || |||||| | |||||||||| ||||| ||||||  |||||||||| ||||||||    
T  12401484 tgaaccataatcccataagtggtgaaaccccaatcaagtctacacatgcatgttttcctc 12401543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 3714978 - 3715042
Alignment:
Q  101 aaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatctttta 165  Q
    ||||||||||| ||||| |||||||||||||||||||||  ||| |||| ||||| || ||||||    
T  3714978 aaaaacatgttaattgtgagaacacgttttctcatgtttaaccattttgtttgacacaactttta 3715042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 26225696 - 26225597
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||| ||||| ||| ||||||| ||  |||||| || |||||| ||||   || ||||| |||| ||||||||||||||||||| ||||    
T  26225696 ctttgaactctatgttgaaggccaacaacatctagtgctagaaagccaaaaatgtcaaacataactggtaaaaaagcatgttgattgtcagaacatgttt 26225597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 231
Target Start/End: Original strand, 6325 - 6524
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| | | ||||||  ||| |||| |||| || ||||||||||||||| | || ||||||||||||||||||||| |||    
T  6325 tttgaactctatgtagaaggtcaacagcctctggtgctaggaaactgaaagtgtcaaaagcaaatggtatagaagcatgttgattgtcagaacacgcttt 6424  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    |||||||||||||||||| ||||||||| |||||||| ||   ||||| || ||||||| || || ||||||||| |||||||||||| |||||||||||    
T  6425 ctcatgtttggccactttacttgacgcaacttttagggctgtctgtcctacggtaaaaggtccga-ccctaatcccacaagtggtgaaaccccagtcaag 6523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 33241 - 33452
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| |||||| |||| |||||||||||| |||||| |||||||| |||||||||||||||||||||||||| |||    
T  33241 tttgaactctatgtagaaggtcaacaacctctggtgttaggaaaccgaaaatgtcaaaagtaaatggtataaaaacatgttgattgtcagaacacgcttt 33340  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    ||||||||| |||||||||||||| ||  |||| |||  |   ||||| ||||||||||  | ||| |||||||| | |||||||||| ||||| |||||    
T  33341 ctcatgtttagccactttgcttgatgccactttaagg-ttgcctgtcctaccgtaaaaggcccgacacctaatcccataagtggtgaaaccccaatcaag 33439  T
Q  231 ttcacacatgcat 243  Q
    ||  |||||||||    
T  33440 tttgcacatgcat 33452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 4413182 - 4412982
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    ||||||| || ||||||||||||| ||  ||||||  ||| ||||||||| || ||||||||||||||| |||| ||||||||||||||||||||| |||    
T  4413182 tttgaaccctatgtagaaggtcaacaatctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 4413083  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    ||||||||||||||||||||||||| || ||||||||  |   ||||| || ||||||| || ||| | |||||| |||||||||||| |||||||||||    
T  4413082 ctcatgtttggccactttgcttgacacagcttttagggttgcctgtcctacggtaaaaggtctgacacttaatcccacaagtggtgaaaccccagtcaag 4412983  T
Q  231 t 231  Q
    |    
T  4412982 t 4412982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 17344629 - 17344850
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| | | | ||||  ||| |||| |||| || ||||||||||||||| |||| |||||||||||| | ||||||||||    
T  17344629 tttgaactctatgtagaaggtcaacagcctatggtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtgaaaacacgtttt 17344728  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    ||| ||||||||||| || ||||||||| |||| ||||||   | ||| || ||||||| || ||| |||||||| |||||| ||||| |||||||||||    
T  17344729 ctcgtgtttggccaccttacttgacgcagctttaaggactggctttcctacggtaaaaggtctgacacctaatcccacaagttgtgaaaccccagtcaag 17344828  T
Q  231 ttcacacatgcat-ttttcctc 251  Q
    |  |||||||||| ||||||||    
T  17344829 tctacacatgcatgttttcctc 17344850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 9685531 - 9685331
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| | ||||||||| | | | ||| ||  ||||||| | ||| || ||||||||||||||| |||| ||||||||||||||||||||| |||    
T  9685531 tttgaactctatatagaaggtccacagcctctagtgctagaaaatcaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 9685432  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
     ||||||||||||||||||||||||||   ||||||| ||   | ||| || ||||||| || ||| |||||||| |||||||||||| |||||||||||    
T  9685431 ttcatgtttggccactttgcttgacgcggattttagggctgcctatcctacggtaaaaggtctgacacctaatcccacaagtggtgaaaccccagtcaag 9685332  T
Q  231 t 231  Q
    |    
T  9685331 t 9685331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 41868024 - 41867824
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| | | ||||||  ||| || |||||| || ||||||||||||||| |||| ||||||||||||||||||| | |||    
T  41868024 tttgaactctatgtagaaggtcaacagcctctggtgctaggaacccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacatgcttt 41867925  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    |||||||||| ||||||||||||||||| |||||| | ||   ||||| ||  |||||| || ||| |||||||| |||||| |||||  | ||||||||    
T  41867924 ctcatgtttgaccactttgcttgacgcagcttttaaggctgcctgtcctacgataaaaggtccgacacctaatcccacaagtcgtgaaatctcagtcaag 41867825  T
Q  231 t 231  Q
    |    
T  41867824 t 41867824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 5532464 - 5532622
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    |||||| |||| ||| |||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||  |||||| |||||    
T  5532464 caaaagtaaatagtataaaagcatgttgattgtcacaacacgttttctcatgtttgaccactttgcttgacgcagcttttagggctgcatgtcctaccgt 5532563  T
Q  185 aaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat 243  Q
    ||||   | |||||||||||| |  ||||||||| | || || ||||||||||||||||    
T  5532564 aaaatccccgacccctaatcctatgagtggtgaaactccggttaagttcacacatgcat 5532622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 251
Target Start/End: Complemental strand, 19161859 - 19161678
Alignment:
Q  71 aaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggact 170  Q
    |||||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||||||| |||||||||  |||||||  |    
T  19161859 aaaaccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacgctttttcatgtttgcccacttttcttgacgcagattttagggat 19161760  T
Q  171 aaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
      |||||| ||| ||||||  | |||  ||||||  |||||||||||| ||| | ||||||  |||||||||| ||||||||    
T  19161759 gtatgtcctaccataaaaggcctgacatctaatctcacaagtggtgaaaccctattcaagtctacacatgcatgttttcctc 19161678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 243
Target Start/End: Original strand, 44686490 - 44686622
Alignment:
Q  110 ttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaaca 209  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||||||   ||||| | ||||||||  | ||||||||| || |||    
T  44686490 ttgattgtcagaacacgctttctcatgtttggccacattgcttgac-cagcttttaggactgtctgtcctatcgtaaaagccccgacccctaaacccaca 44686588  T
Q  210 agtggtgaagccccagtcaagttcacacatgcat 243  Q
    ||||||||| |||||||||||| |||||||||||    
T  44686589 agtggtgaaaccccagtcaagtccacacatgcat 44686622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 2888507 - 2888643
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||  ||||||||||||||| ||| ||| || |||| || || ||| || || || | ||||||| ||||||||||||||||||||||||||||||    
T  2888507 tttgaaccttgtgtagaaggtcaacaacctcttgtgttaggaagccaaaagtgtcataaacgaatggtataaaaacatgttgattgtcagaacacgtttt 2888606  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    |||||||||| |||||||||| |||||| ||||||||    
T  2888607 ctcatgtttgtccactttgctagacgcaacttttagg 2888643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 251
Target Start/End: Complemental strand, 23485000 - 23484833
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    ||||| ||||||||| |||| ||||||||||||||||||| | |||||||| ||||||||||||| |||||| | |||||||| |||  ||||| |||||    
T  23485000 caaaaacaaatggtataaaagcatgttgattgtcagaacatgctttctcatatttggccactttgtttgacgtagcttttagggctagttgtcccaccgt 23484901  T
Q  185 aaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
     ||||  | ||| | |||||| |||||||||||| ||||| ||||||  |||||||||| ||||||||    
T  23484900 taaaggcccgacacttaatcccacaagtggtgaaaccccaatcaagtctacacatgcatgttttcctc 23484833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 27502423 - 27502573
Alignment:
Q  101 aaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccct 200  Q
    |||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||  | | ||||| | |||||||| || |||||||    
T  27502423 aaaagcatgttgtttgtcggaacacgttttctcatgtttgaccactttgcttgacgcagcttttagg-gttattgtcctatcgtaaaagctctgacccct 27502521  T
Q  201 aatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    || || |||||||||||| ||||| ||| || ||||||||||| ||||||||    
T  27502522 aaacccacaagtggtgaaaccccattcaggtccacacatgcatgttttcctc 27502573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 28224990 - 28225212
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||| ||||| ||||||||||||| ||| ||||    ||| || |||||| || ||||||||||||||| |||| ||||||||||||||||| ||| ||    
T  28224990 ctttggactctatgtagaaggtcaacaacctctgaagctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaatacgctt 28225089  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaa 229  Q
    |||||| ||||| |||||||||||||||| ||||||    |   ||||| ||||||||||  |  || ||||| || |||||| ||||| ||||| ||||    
T  28225090 tctcatatttggtcactttgcttgacgcagcttttaaagttgtttgtcctaccgtaaaagccctaactcctaagcccacaagtagtgaaaccccattcaa 28225189  T
Q  230 gttcacacatgcat-ttttcctc 251  Q
    || ||||||||||| ||||||||    
T  28225190 gtccacacatgcatgttttcctc 28225212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 18745070 - 18744849
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||| ||| | | | ||||  ||||||| |||||||| ||||||||||||||| ||||  |||||||||||||||||||| |||    
T  18745070 tttgaactctatgtagaaggccaacagcctatggtgctagaaaatcgaaaatgtcaaaagcaaatggtataaaagtatgttgattgtcagaacacgcttt 18744971  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    ||| ||||||||||| |  ||||||||  |||| ||| ||   |||   || ||||| |  | ||| |||||||| |||||||||||| |||||||||||    
T  18744970 ctcgtgtttggccacctaacttgacgctgctttaagggcttcctgtgttacggtaaatggcctgacacctaatcccacaagtggtgaaaccccagtcaag 18744871  T
Q  231 ttcacacatgcat-ttttcctc 251  Q
    |  |||||||||| ||||||||    
T  18744870 tctacacatgcatgttttcctc 18744849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 243
Target Start/End: Original strand, 3825774 - 3825930
Alignment:
Q  88 aagcaaatggtagaaaaacatgttgattgtcag-aacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaa 186  Q
    |||||||||  | |||||||||| ||||||||| || |   ||| ||||||||| ||||||||||||||||| |||||||| ||   ||||  |||||||    
T  3825774 aagcaaatgaaataaaaacatgtagattgtcaggaaaaaactttttcatgtttgaccactttgcttgacgcagcttttagggctctctgtcataccgtaa 3825873  T
Q  187 aagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat 243  Q
    |||| | |||||||||||| ||||| |||||| || || |||||| |||||||||||    
T  3825874 aagtcctgacccctaatcccacaaggggtgaaacctcaatcaagtccacacatgcat 3825930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 7760962 - 7760753
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||||||||||||| ||| ||||||  ||||||||| ||  || | || |||||| |||  |||| |||| |||||| ||| |||||||    
T  7760962 ctttgaactctatgtagaaggtcaacaacctctggtgatagaaaaccaaaggtgtctaatgcaaatcgtaagaaaatatgt-gattgttagatcacgttt 7760864  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaa 229  Q
    ||||||| ||||||||||| ||||||||  |||| |||  |   ||||| ||| |||||||   |   | |||||| |||||||||||| ||| ||||||    
T  7760863 tctcatgattggccactttacttgacgcgactttgagggttgcttgtcccaccataaaagtcttggttcataatcccacaagtggtgaaaccctagtcaa 7760764  T
Q  230 gttcacacatg 240  Q
    |||||||||||    
T  7760763 gttcacacatg 7760753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 13147202 - 13147087
Alignment:
Q  45 agaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaac---atgttgattgtcagaacacgttttctcatgtttgg 141  Q
    |||||||||| ||  |||||| |||||||||| ||| || ||||| ||||||||| |||||    ||| |||||||||||||||| |||||||||||||     
T  13147202 agaaggtcaacaatctctggtgttagaaaaccaaaagtgtcaaaatcaaatggtataaaaagtatatgctgattgtcagaacacgctttctcatgtttga 13147103  T
Q  142 ccactttgcttgacgc 157  Q
    ||||||| ||||||||    
T  13147102 ccacttttcttgacgc 13147087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 34814934 - 34814826
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| |   |||||| |||| || |||||| || | ||||||||||||| |||| ||| ||||||||||||||||| |||    
T  34814934 tttgaactctatgtagaaggtcaacagtctctggtgttaggaa-ccgaaagtgtcgaaagcaaatggtataaaagcatattgattgtcagaacacgcttt 34814836  T
Q  131 ctcatgtttg 140  Q
    ||||||||||    
T  34814835 ctcatgtttg 34814826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 1296101 - 1296031
Alignment:
Q  96 ggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttag 166  Q
    |||| ||||||||||| ||||||||||||  |||||||||||||||||| |||| |||||||| |||||||    
T  1296101 ggtataaaaacatgtttattgtcagaacatattttctcatgtttggccattttgtttgacgcagcttttag 1296031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 16351910 - 16351820
Alignment:
Q  78 aaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagga 168  Q
    |||||| ||||||||||   || ||||  ||||||||||| ||||||| |||||||||||||| |||||||||||||| || |||||||||    
T  16351910 aaaatgtcaaaagcaaacaatataaaattatgttgattgtgagaacacattttctcatgtttgaccactttgcttgacacaacttttagga 16351820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 20142755 - 20142656
Alignment:
Q  132 tcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagt 231  Q
    ||||||||||||||||||||||||| | |||||||  ||   ||||| || ||||||| |  ||| |||||||| |||||||||||||||||| ||||||    
T  20142755 tcatgtttggccactttgcttgacgaagcttttagagctgcctgtcctacggtaaaaggtacgacacctaatcccacaagtggtgaagccccaatcaagt 20142656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 44720374 - 44720449
Alignment:
Q  91 caaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttag 166  Q
    |||| |||| ||||||||||||||||||| |||||||||| |||||||||||||  || ||||||||  |||||||    
T  44720374 caaacggtataaaaacatgttgattgtcataacacgttttttcatgtttggccatcttacttgacgcggcttttag 44720449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 3968478 - 3968402
Alignment:
Q  78 aaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttga 154  Q
    |||||| |||| |||||| ||| |||| ||| |||||||||| |||| |||||||||| |||| |||||||||||||    
T  3968478 aaaatgtcaaacgcaaattgtataaaagcatattgattgtcaaaacatgttttctcatatttgaccactttgcttga 3968402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 2886690 - 2886637
Alignment:
Q  72 aaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacac 125  Q
    |||||||||||  ||||| |||||| || |||||||||||||||||||||||||    
T  2886690 aaaccgaaaatatcaaaaacaaatgatataaaaacatgttgattgtcagaacac 2886637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 11921271 - 11921218
Alignment:
Q  86 aaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgttt 139  Q
    |||| |||| |||| ||||| |||||||||||||||||||||||||| ||||||    
T  11921271 aaaaacaaacggtataaaaatatgttgattgtcagaacacgttttctaatgttt 11921218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 33612652 - 33612555
Alignment:
Q  42 tgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgttt 139  Q
    ||||||| ||||| ||| || ||| |||| || || ||| || ||||  ||||| ||| |||| |||||||||||||| |||||||||||||||||||    
T  33612652 tgtagaatgtcaacaacctccggtgttaggaagccaaaagtgtcaaatacaaattgtataaaatcatgttgattgtcaaaacacgttttctcatgttt 33612555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 20142841 - 20142753
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtca 119  Q
    |||||||||| |||| |||||||| ||| | || |  ||||||||| ||| || |||||| |||||||| |||| ||||||||||||||    
T  20142841 tttgaactctatgtataaggtcaacaacctttgatgctagaaaaccaaaagtgtcaaaagaaaatggtataaaagcatgttgattgtca 20142753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 5679345 - 5679392
Alignment:
Q  107 atgttgattgtcagaacacgttttctcatgtttggccactttgcttga 154  Q
    ||||||||| ||  |||| |||||||||||||||||||||||||||||    
T  5679345 atgttgattatcttaacatgttttctcatgtttggccactttgcttga 5679392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 29808121 - 29808199
Alignment:
Q  86 aaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatctttta 165  Q
    |||||||||||||| |||| |||||||||||| | |||||| | ||||||||||||  ||||| ||||| ||| ||||||    
T  29808121 aaaagcaaatggtataaaa-catgttgattgttataacacgctgtctcatgtttggtgactttacttgaggcaactttta 29808199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 243
Target Start/End: Original strand, 500259 - 500430
Alignment:
Q  72 aaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggacta 171  Q
    |||||||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||     
T  500259 aaaccgaaaatgtcaaaagtaaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaacttttagggctg 500358  T
Q  172 aatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat 243  Q
       |||| ||||||||||  | ||| |||||||| |||||||||||| || || ||||||  ||||||||||    
T  500359 tcggtcctaccgtaaaaggcccgacacctaatcccacaagtggtgaaacctcactcaagtctacacatgcat 500430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 35740102 - 35739882
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||  ||||||  ||| |||| |||| || ||||||| ||| ||| ||||||||||||||||||||||| || |||    
T  35740102 tttgaactctatgtagaaggtcaacaatctctggtgctaggaaactgaaagtgtcaaaagctaattgtataaaaacatgttgattgtcagaacccgcttt 35740003  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    |||||||||||||||||||||| || || ||||||||  |   ||||| ||||||||||  | || || |||||| || ||||||||| |||||||||||    
T  35740002 ctcatgtttggccactttgcttaacacaacttttagggatgtctgtcctaccgtaaaaggcccga-ccttaatcccactagtggtgaaaccccagtcaag 35739904  T
Q  231 ttcacacatgcat-ttttcctc 251  Q
    | ||||||||||| ||||||||    
T  35739903 tccacacatgcatgttttcctc 35739882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 24125019 - 24125231
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||| | ||||||||| ||| ||| ||||||  ||| ||| | ||| || ||||||||||||||| |||| |||||||||||||||| |||| |||    
T  24125019 tttgaactttatgtagaaggccaacaacctctggtgctaggaaatcaaaattgtcaaaagcaaatggtataaaagcatgttgattgtcagagcacgcttt 24125118  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    |||||||||||||| ||||||||| ||| |||||||| ||   ||||| ||||||||||    ||| | |||||| |||||||||||| |||||||||||    
T  24125119 ctcatgtttggccattttgcttgatgcagcttttagggctgcttgtcccaccgtaaaaggcacgacgcataatcccacaagtggtgaaaccccagtcaag 24125218  T
Q  231 ttcacacatgcat 243  Q
    |  ||||||||||    
T  24125219 tctacacatgcat 24125231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 251
Target Start/End: Original strand, 39434712 - 39434879
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    ||||| ||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||   ||||| || ||    
T  39434712 caaaaacaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagcttcctgtcctactgt 39434811  T
Q  185 aaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    |||||     |||||||| || |||||||||||| |||||||||||| ||||||||||| ||||||||    
T  39434812 aaaagcctccacccctaaacccacaagtggtgaaaccccagtcaagtacacacatgcatgttttcctc 39434879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 217
Target Start/End: Original strand, 38815284 - 38815471
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||||||||||||| | | ||||||  ||| || | |||| || ||||||||||||||| |||| ||||||||||||||||||||| ||    
T  38815284 ctttgaactctatgtagaaggtcaacaccctctggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctt 38815383  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtga 217  Q
    |||||||||||||||||||| ||| ||   |||||||| ||   ||||| ||| ||||||  | |||||||||||| |||||||||||    
T  38815384 tctcatgtttggccactttgtttggcgtggcttttagggctgtctgtcctaccataaaagccccgacccctaatcccacaagtggtga 38815471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 6592566 - 6592705
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| || |||||||||| ||| |||||   ||| |||| |||| || ||||||||||||||  |||| |||||||||||| |||||||| |||    
T  6592566 tttgaactctatgcagaaggtcaacaacctctggagctaggaaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgtgagaacacgcttt 6592665  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggact 170  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  6592666 ctcatgtttggccactttgcttgacgcagcttttacgact 6592705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 25021931 - 25021709
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||| ||||| || |||||| ||| ||||||  ||| || || |||||| |||||| |||||||| ||||||||||||||||| |||||||  ||    
T  25021931 ctttgaactttgtgtggatggtcaacaacctctggtgctaggaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgtgagaacacactt 25021832  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaa 229  Q
    |||||| |||  |||||||||||||| || |||||||| ||  |||||  || ||||||     |||||||||||| |||||||||||| | || |||||    
T  25021831 tctcatatttcaccactttgcttgacacaacttttagggctgtatgtcatactgtaaaaacatcgacccctaatcccacaagtggtgaaactccggtcaa 25021732  T
Q  230 gttcacacatgcat-ttttcctc 251  Q
    || ||||||||||| ||||||||    
T  25021731 gtccacacatgcatgttttcctc 25021709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 239
Target Start/End: Original strand, 8619805 - 8620013
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    ||||| |||| ||| ||| ||||| ||| |||||| ||||||| || ||||||  |||| ||||||||| |||| || ||||||||||| || ||| |||    
T  8619805 tttgagctctatgtcgaaagtcaacaacctctggtgttagaaagccaaaaatgttaaaaacaaatggtataaaagcacgttgattgtcaaaatacgcttt 8619904  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
     ||||||||| ||| ||| ||||||||| |||||||| ||   ||| | | |||||||||   || | ||||||| |||||||||||| |||||||||||    
T  8619905 ttcatgtttgaccattttacttgacgcaacttttagggctgtctgttctatcgtaaaagtcacgatctctaatcccacaagtggtgaaaccccagtcaag 8620004  T
Q  231 ttcacacat 239  Q
    |||||||||    
T  8620005 ttcacacat 8620013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 3187965 - 3188181
Alignment:
Q  36 actctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcat 135  Q
    ||||| |||||||||| || ||| |||| |  ||| || |||||| |  ||||||||||||||| |||| ||||||||||||||||||||| || |||||    
T  3187965 actctatgtagaaggttaacaacctctgatgctaggaagccgaaagtttcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttcctcat 3188064  T
Q  136 gtttggccactttgcttgacgcatcttttag-gactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttca 234  Q
    |||| |||||||||||||| ||| ||||||| | ||   ||||| ||||||||||  | || |||||| || |||||||||||| |||||  ||||  ||    
T  3188065 gttttgccactttgcttgatgcaacttttagaggcttcctgtcctaccgtaaaagccccga-ccctaaacccacaagtggtgaaaccccacacaaggcca 3188163  T
Q  235 cacatgcat-ttttcctc 251  Q
    ||||||||| ||||||||    
T  3188164 cacatgcatgttttcctc 3188181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 37517163 - 37517285
Alignment:
Q  109 gttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaac 208  Q
    |||||||||| ||||||  ||||||||||||||||||||||||||| ||| |||||||  ||   ||||| || ||||||| ||  || |||||||||||    
T  37517163 gttgattgtcggaacaccctttctcatgtttggccactttgcttgatgcagcttttagagctgtctgtcctacggtaaaaggtcctacgcctaatccaac 37517262  T
Q  209 aagtggtgaagccccagtcaagt 231  Q
    |||||| ||| ||||||||||||    
T  37517263 aagtggcgaaaccccagtcaagt 37517285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 8882372 - 8882445
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgca 158  Q
    ||||| ||||||||  |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8882372 caaaaacaaatggtttaaaagcatattgattgtcagaacacgctttctcatgtttggccactttgcttgacgca 8882445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 251
Target Start/End: Original strand, 10189581 - 10189755
Alignment:
Q  78 aaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtc 177  Q
    |||||| |||| ||||||| || |||||||||||||||||||||||| | |||||| |||||| | |||||  ||| |||| ||||||||| |  |||||    
T  10189581 aaaatgtcaaatgcaaatgatataaaaacatgttgattgtcagaacatgctttctcttgtttgactactttaattggcgcaacttttaggaatgtatgtc 10189680  T
Q  178 caaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    | ||| ||||||     ||||||||||  ||||| ||||||  |||| |||||| ||||||| ||| ||||||||    
T  10189681 ctaccataaaagccttaacccctaatctcacaagcggtgaaatcccaatcaagtccacacatacatgttttcctc 10189755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 6618316 - 6618383
Alignment:
Q  72 aaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgttt 139  Q
    |||| |||| || ||||||||||||||  |||| |||||||||||| |||||||| ||||||||||||    
T  6618316 aaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgtgagaacacgctttctcatgttt 6618383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 4073580 - 4073662
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    |||| |||||| ||| |||| |||||||||||  | ||||||||||||| |||||| |||||||| |||| ||| ||||||||    
T  4073580 caaatgcaaattgtataaaatcatgttgattggtaaaacacgttttctcttgtttgaccactttgtttgatgcaacttttagg 4073662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 22589394 - 22589336
Alignment:
Q  107 atgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatctttta 165  Q
    |||||| ||||||||||||| |||||||||||  |||| ||||||||||||| ||||||    
T  22589394 atgttggttgtcagaacacgctttctcatgttcagccattttgcttgacgcagctttta 22589336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 28196237 - 28196322
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggact 170  Q
    ||||| ||||||||| ||||||||||| ||| ||| |||||  |||||||||||| ||| |||| ||||| |||  ||||||||||    
T  28196237 caaaaacaaatggtataaaaacatgtttattatcataacacactttctcatgtttagccgctttacttgatgcagtttttaggact 28196322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 4699920 - 4699983
Alignment:
Q  91 caaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgac 155  Q
    ||||||||  ||||||||||| ||||| |||||||| ||  ||||||||||||||||||||||||    
T  4699920 caaatggtgtaaaaacatgttaattgtgagaacacgctta-tcatgtttggccactttgcttgac 4699983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 10556339 - 10556292
Alignment:
Q  101 aaaaacatgttgattgtcagaacacgttttctcatgtttggccacttt 148  Q
    ||||||||||||||| |||||| | ||||||||||||||| |||||||    
T  10556339 aaaaacatgttgattttcagaatatgttttctcatgtttgaccacttt 10556292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 6792257 - 6792323
Alignment:
Q  121 aacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaa 187  Q
    |||||||||||||||||||||||||| || |||||| | |||||| ||||   | ||||||||||||    
T  6792257 aacacgttttctcatgtttggccactctgtttgacgtagcttttacgactgtctatccaaccgtaaa 6792323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 39671226 - 39671170
Alignment:
Q  92 aaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccacttt 148  Q
    |||| ||| ||||||||||| ||||||| |||||| ||||||  |||||||||||||    
T  39671226 aaattgtataaaaacatgttaattgtcaaaacacgctttctctggtttggccacttt 39671170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 42922173 - 42922109
Alignment:
Q  101 aaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatctttta 165  Q
    |||| ||| |||||||||| ||||||||||||||  |||| ||| |||| |||||||| ||||||    
T  42922173 aaaagcattttgattgtcaaaacacgttttctcaaatttgaccattttgtttgacgcaactttta 42922109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 33 - 231
Target Start/End: Original strand, 44198760 - 44198958
Alignment:
Q  33 tgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttct 132  Q
    |||||||| ||||||||||||| | | || ||| |||  ||||||||| || ||||||||||||||| |||| |||||||||| |||||||||| |||||    
T  44198760 tgaactctatgtagaaggtcaacagcctcgggtgttaagaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattctcagaacacgctttct 44198859  T
Q  133 catgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagt 231  Q
    |||||||||||||||||||||||||| |||||||  ||   || || || ||||||| || ||| |||||||| |||||||||||| ||||||||||||    
T  44198860 catgtttggccactttgcttgacgcaacttttagagctgcctgacctacggtaaaaggtccgacacctaatcccacaagtggtgaaaccccagtcaagt 44198958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 31 - 251
Target Start/End: Original strand, 53785700 - 53785921
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| ||||||  ||| ||||||||| || ||||||||||||||| |||| ||||||||||||||||||||| |||    
T  53785700 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 53785799  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    ||| ||||||||||| || ||||||||  |||| ||| ||   | ||| || |||||||  | ||| |||||||| || ||||||||| |||||||||||    
T  53785800 ctcgtgtttggccaccttacttgacgcggctttaagggctgcctatcctacggtaaaaggcccgacacctaatcccactagtggtgaaaccccagtcaag 53785899  T
Q  231 ttcacacatgcat-ttttcctc 251  Q
    |  |||||||||| ||||||||    
T  53785900 tctacacatgcatgttttcctc 53785921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 7900853 - 7901070
Alignment:
Q  35 aactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctca 134  Q
    |||||| ||||||||||||| ||| |||| |  ||| || |||||| || ||||| ||||||||| |||| ||||||||||||||||| ||| |||||||    
T  7900853 aactctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaaaacgctttctca 7900952  T
Q  135 tgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttca 234  Q
    |||| ||| | |||||||||||||  |||||||  ||   |||| ||||||||||  |  ||||||||||| |||||||||||| |||||||||||| ||    
T  7900953 tgttcggctattttgcttgacgcagtttttagggatatccgtcctaccgtaaaagacccaacccctaatcccacaagtggtgaaaccccagtcaagtcca 7901052  T
Q  235 cacatgcat-ttttcctc 251  Q
    ||||||||| ||||||||    
T  7901053 cacatgcatgttttcctc 7901070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 39583346 - 39583124
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| || |||||||||| ||| | || |  ||| ||||||||| || | ||| |||||| || |||| ||||||||||||||||||||| ||    
T  39583346 ctttgaactctatgcagaaggtcaacaacctatgatgctaggaaaccgaaagtgtcgaaaacaaatgatataaaagcatgttgattgtcagaacacgctt 39583247  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaa 229  Q
    ||||||||||||||||||||||||||||| |||||||| ||   | ||| ||| |||| |  | ||||| |||||| ||||||||| || ||  ||||||    
T  39583246 tctcatgtttggccactttgcttgacgcagcttttagggctgcctatcctaccataaatggcccgacccttaatcccacaagtggtaaaacctaagtcaa 39583147  T
Q  230 gttcacacatgcat-ttttcctc 251  Q
    || ||| ||||||| ||||||||    
T  39583146 gtccacgcatgcatgttttcctc 39583124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 37133112 - 37132979
Alignment:
Q  34 gaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctc 133  Q
    ||||||| ||||||||||||| ||| ||||||  ||  ||||||||| ||  |||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  37133112 gaactctatgtagaaggtcaacaacctctggtgctaagaaaccgaaagtgtaaaaaacaaatggtataaaaacatgttgattgtcagaacacgctttctc 37133013  T
Q  134 atgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||||  ||||||||||||||| | ||||||||    
T  37133012 atgtttaaccactttgcttgacgtagcttttagg 37132979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 52741628 - 52741495
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| ||||||  ||| ||||| ||| || ||||||||||||||| |||| ||||||||||||||||||||| |||    
T  52741628 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgcttt 52741529  T
Q  131 ctcatgtttggccactttgcttgacgcatctttt 164  Q
    ||||||||||| || |||| ||||| || |||||    
T  52741528 ctcatgtttggtcaatttgtttgactcagctttt 52741495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 26772803 - 26772885
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||    
T  26772803 caaaagcaaatggtataaaagcatgttgattgtcagaacacgttttctgatgtttggccactttgcttgacacaacttttagg 26772885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 3443429 - 3443253
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||||||||||||| ||| ||| ||  ||| |||| |||| || ||| || |||||||| |||| |||||||||||| |||| ||  ||    
T  3443429 ctttgaactctatgtagaaggtcaacaacctctagtgctaggaaactgaaagtgtcaacagaaaatggtataaaagcatgttgattgttagaatacactt 3443330  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatcca 206  Q
    | ||||||||||||| ||||||||||||| |||||||||||   ||||| | ||||||||| | ||| |||||||||    
T  3443329 tttcatgtttggccattttgcttgacgcaacttttaggactctctgtcctatcgtaaaagtcctgacacctaatcca 3443253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 243
Target Start/End: Complemental strand, 54508486 - 54508288
Alignment:
Q  45 agaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacg-ttttctcatgtttggcc 143  Q
    |||||||||| ||| ||||||  ||||||| | |||||| |||||||||||| || ||||||||||| |||||||||||| | ||||||||||||| |||    
T  54508486 agaaggtcaacaacctctggtgctagaaaatcaaaaatgtcaaaagcaaatgatataaaaacatgttaattgtcagaacaagtttttctcatgtttagcc 54508387  T
Q  144 actttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat 243  Q
    | |||| |||||||| | |||| | ||   ||||  |  |||||| | | ||| ||||||||||||||||||||| ||||| |||||| |||||||||||    
T  54508386 attttgtttgacgcaac-tttatggctgcttgtcttattgtaaaaatcctgacacctaatccaacaagtggtgaaaccccaatcaagtacacacatgcat 54508288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 166
Target Start/End: Complemental strand, 46940832 - 46940751
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttag 166  Q
    ||||| ||||||||| |||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  46940832 caaaaacaaatggtataaaagcatgttgattgtcggaacatgttttctaatgtttggccactttgcttgacgcatcttttag 46940751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 251
Target Start/End: Original strand, 38146108 - 38146268
Alignment:
Q  92 aaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagtt 191  Q
    |||||||| ||||||||||||||||||| |||||||| ||||  ||||| |||||||| |||| ||  |||||||| ||  |||||| ||| | |||| |    
T  38146108 aaatggtataaaaacatgttgattgtcaaaacacgttgtctcgcgtttgaccactttgattgatgccgcttttagggctgcatgtcctaccctcaaagct 38146207  T
Q  192 cagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    | |||||||||||| |||||| ||||| |||||  ||||| | ||||||||| ||||||||    
T  38146208 ccgacccctaatcccacaagtcgtgaaaccccatgcaagtcctcacatgcatattttcctc 38146268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 32546786 - 32546901
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| | | | ||||  ||| |||| |||| || ||||||||||||||| ||||  |||||||||||| ||||||| |||    
T  32546786 tttgaactctatgtagaaggtcaacagcctttggtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagtatgttgattgtccgaacacgcttt 32546885  T
Q  131 ctcatgtttggccact 146  Q
    ||||||||||||||||    
T  32546886 ctcatgtttggccact 32546901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 7502117 - 7502003
Alignment:
Q  42 tgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaa-catgttgattgtcagaacacgttttctcatgtttg 140  Q
    ||||||||||||| ||| ||||||  ||| ||||| |||||| |||||| |||||||| ||||| ||||||||||||  ||||||| |||||||||||||    
T  7502117 tgtagaaggtcaacaacctctggtgctaggaaaccaaaaatgtcaaaagaaaatggtataaaaaacatgttgattgttcgaacacgctttctcatgtttg 7502018  T
Q  141 gccactttgcttgac 155  Q
     ||||||| ||||||    
T  7502017 accactttacttgac 7502003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 13582555 - 13582721
Alignment:
Q  86 aaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgta 185  Q
    |||| ||||||||| ||||||| |||||||||||||||||  ||||| |||||||  ||||||| |||||||| |||||||| ||   ||||| || |||    
T  13582555 aaaaacaaatggtataaaaacacgttgattgtcagaacacactttcttatgtttgatcactttgattgacgcagcttttagggctgcttgtcctacggta 13582654  T
Q  186 aaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    ||||  | ||| |||||||| ||||||| |||| || | |||||||  |||||||||| ||||||||    
T  13582655 aaaggcctgacacctaatcccacaagtgttgaaacctcggtcaagtctacacatgcatgttttcctc 13582721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 251
Target Start/End: Original strand, 49017966 - 49018175
Alignment:
Q  43 gtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggc 142  Q
    ||||||| |||| ||| || |||  ||| ||||||||| ||  ||||  |||||||| ||||||||||||||||| |||||||  ||||||||||||||     
T  49017966 gtagaagatcaacaacctcgggtgctaggaaaccgaaagtgtaaaaaaaaaatggtataaaaacatgttgattgttagaacacactttctcatgtttggt 49018065  T
Q  143 cactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgca 242  Q
    ||||||| || ||| | |||| |||  |   ||||| ||||||||||    ||| |||||| | |||||||||||| | ||||||||||| |||||||||    
T  49018066 cactttgttttacgtaactttcagggttgcttgtcctaccgtaaaaggctcgacacctaattccacaagtggtgaaactccagtcaagtttacacatgca 49018165  T
Q  243 t-ttttcctc 251  Q
    | ||||||||    
T  49018166 tgttttcctc 49018175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 52412008 - 52411903
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| |||||||||||||  |||||| || ||||||| | |||| || ||||||||||||| | |||| ||||||||||||||||||||| |     
T  52412008 ctttgaactctatgtagaaggtcaacgacatctagtgttagaaagctgaaagtgtcaaaagcaaatggaataaaagcatgttgattgtcagaacacgctc 52411909  T
Q  130 tctcat 135  Q
    ||||||    
T  52411908 tctcat 52411903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 25325020 - 25325180
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacat--gttgattgtcagaacacgtt 128  Q
    |||||||||| ||||||||||||| ||  | ||||  ||| ||| ||||| ||   ||||||||||||| ||||||||  |||||||| || || |||||    
T  25325020 tttgaactctatgtagaaggtcaacaatctatggtgctaggaaatcgaaagtgttgaaagcaaatggtataaaaacatatgttgattgccaaaatacgtt 25325119  T
Q  129 ttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaag 189  Q
    || | |||||| | |||||||||||||||| ||||||| |||| |||||| ||| ||||||    
T  25325120 ttataatgttttgtcactttgcttgacgcaacttttagaactacatgtcctaccataaaag 25325180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 45676830 - 45676778
Alignment:
Q  104 aacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacg 156  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  45676830 aacatgttgattgtcagaacacgttttcttatgcttggtcactttgcttgacg 45676778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 3376846 - 3376675
Alignment:
Q  42 tgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtaga-aaaacatgttgattgtcagaacacgttttctcatgtttg 140  Q
    ||||||||||||| ||| ||| ||  ||| ||||| |||| | ||||||||||||||  | |||| ||||||||||| |||| | ||||| ||||||||     
T  3376846 tgtagaaggtcaacaacctctagtgctaggaaaccaaaaaagtcaaaagcaaatggtctataaaatatgttgattgtgagaatatgttttatcatgttta 3376747  T
Q  141 gccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagt 212  Q
     ||| ||| |||||||||  ||||| || |  || ||| ||||||||||||  |||||||||||| ||||||    
T  3376746 accatttttcttgacgcagtttttaagaatgcatatcctaccgtaaaagttgcgacccctaatcctacaagt 3376675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 37992377 - 37992480
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    |||||| ||||| || |||| ||||||||||||||||||| | || ||||||||||| ||||||| ||||| || |||  ||| ||| |||||| |||||    
T  37992377 caaaagtaaatgatataaaatcatgttgattgtcagaacatgcttcctcatgtttggtcactttgtttgacacaacttgcagggctatatgtcctaccgt 37992476  T
Q  185 aaaa 188  Q
    ||||    
T  37992477 aaaa 37992480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 29861944 - 29862009
Alignment:
Q  187 aagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcat-ttttcctc 251  Q
    |||||| ||||||||||| |||||||| | || |||||||||||||||||||||||| ||||||||    
T  29861944 aagttccgacccctaatctaacaagtgtttaaaccccagtcaagttcacacatgcatgttttcctc 29862009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 4473052 - 4473179
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||| | |||||||||| || ||  ||||||  ||| || |||||| || ||||| ||||| ||| |||||||| ||||| || |||||||| ||    
T  4473052 ctttgaactttatgtagaaggttaagaat-tctggtgctaggaagccgaaagtgtcaaaaacaaatagtataaaaacatattgatggttagaacacgctt 4473150  T
Q  130 tctcatgtttggccactttgcttgacgca 158  Q
    | |||||||| | ||||||||||||||||    
T  4473151 tttcatgttttgacactttgcttgacgca 4473179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 38670959 - 38670887
Alignment:
Q  68 tagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttg 140  Q
    |||||| || ||| || ||||| ||||| ||| |||| ||||||||||||||||||||| |||||||||||||    
T  38670959 tagaaagccaaaagtgtcaaaaacaaattgtataaaagcatgttgattgtcagaacacgctttctcatgtttg 38670887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 5338634 - 5338850
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcag---aacacgt 127  Q
    |||||||||| ||||||| ||||| ||  ||| ||  ||| || |||||| || ||||||||||| ||| |||| |||||||| |||||    ||| |      
T  5338634 tttgaactctatgtagaatgtcaacaatctctagtgctaggaagccgaaagtgtcaaaagcaaattgtataaaagcatgttgactgtcaacgcaacgcac 5338733  T
Q  128 tttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttc-agacccctaatccaacaagtggtgaagccccagt 226  Q
    ||||||||||||||| | |||| |||||||| || ||||| ||   ||||| |||||||||| || | | ||||||||| |||||||||| | ||| | |    
T  5338734 tttctcatgtttggcaattttgtttgacgcaactcttagggctttctgtcctaccgtaaaagctctaaatccctaatcccacaagtggtgtaacccaaat 5338833  T
Q  227 caagttcacacatgcat 243  Q
    ||||| |||| ||||||    
T  5338834 caagtccacagatgcat 5338850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 35484754 - 35484684
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgac 155  Q
    |||| |||||| ||| |||||||||||||||||  |||||  |||||||||||||| ||||||| ||||||    
T  35484754 caaatgcaaatagtacaaaaacatgttgattgttggaacatattttctcatgtttgaccactttacttgac 35484684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 51234607 - 51234716
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| |||| |  ||||||  ||||| || |||||  |||||||| |||| ||||||| |||||| |||| | |||    
T  51234607 tttgaactctatgtagaaggtcaacaacctctgatgctagaaagtcgaaagtgtcaaaaataaatggtataaaagcatgttggttgtcataacatgcttt 51234706  T
Q  131 ctcatgtttg 140  Q
     |||||||||    
T  51234707 ttcatgtttg 51234716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 26856879 - 26856755
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||||||||||||| |   ||| ||  ||| ||| |||||  | |||||||| |||||| |||| |||||||||||||| |||||| ||    
T  26856879 ctttgaactctatgtagaaggtcaacagtctctagtgctaggaaatcgaaagcgtcaaaagcagatggtataaaagcatgttgattgtcacaacacgctt 26856780  T
Q  130 tctcatgtttggccactttgcttga 154  Q
    | |||| |||| ||| ||| |||||    
T  26856779 tatcatatttgaccattttacttga 26856755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 38978915 - 38978779
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||| | |||||||||||||   | || |||  ||| ||||| ||| || ||||| ||||| ||| |||||||| |||||||||| || |||||||    
T  38978915 tttgaactatatgtagaaggtcaacggcctcaggtgctaggaaaccaaaagtgtcaaaaacaaatagtataaaaacatattgattgtcaaaatacgtttt 38978816  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    | ||||| |  ||| |||||||||| || ||||||||    
T  38978815 cacatgtctaaccaatttgcttgacacaacttttagg 38978779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 34644556 - 34644778
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||| ||||| ||||||||||||| ||| |||| |  ||| || |||||| || ||||| ||||||||| |||| ||||| | ||||||||||||| ||    
T  34644556 ctttggactctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgtaggttgtcagaacacgctt 34644655  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaa 229  Q
    |||||||||||||||||||| |||||||| ||||||||  |   ||||| ||||||||||  | ||||||||| || |||||||||||| ||||||||||    
T  34644656 tctcatgtttggccactttgtttgacgcaacttttagggttgcttgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaa 34644755  T
Q  230 gttcacacatgcat-ttttcctc 251  Q
    || ||||||||||| ||||||||    
T  34644756 gtccacacatgcatgttttcctc 34644778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 29169909 - 29169689
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| |||||||||| || ||| ||||||  ||| ||||||||| || ||||||||||||||| |||| |||||||||||||||||||||||||    
T  29169909 tttgaactctatgtagaaggttaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgtttt 29169810  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    ||| ||||||||||| || |||||| || |||| ||| ||   ||||| || |||||||  | ||| |||||||| | |||||||||| |||||||||||    
T  29169809 ctcgtgtttggccaccttacttgacacaactttaagggctgtctgtcctacggtaaaaggcccgacacctaatccca-aagtggtgaaaccccagtcaag 29169711  T
Q  231 ttcacacatgcat-ttttcctc 251  Q
    |  |||||||||| ||||||||    
T  29169710 tctacacatgcatgttttcctc 29169689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 243
Target Start/End: Complemental strand, 4862106 - 4861893
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||||||||||||| ||| | |||| |||| ||| ||||| || ||||||||||| ||| ||||  |||||| ||||||||| ||| ||    
T  4862106 ctttgaactctatgtagaaggtcaacaacttttggtgttaggaaatcgaaagtgtcaaaagcaaattgtataaaagtatgttgcttgtcagaagacgctt 4862007  T
Q  130 tctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaa 229  Q
    ||||||||||| ||| ||| ||||||||| |||||| | ||   ||||| ||| |||| ||  |||||||||||||||||||||||||| | ||||||||    
T  4862006 tctcatgtttgaccattttacttgacgcaacttttaaggctgtctgtcctaccataaatgtcaagacccctaatccaacaagtggtgaaacaccagtcaa 4861907  T
Q  230 gttcacacatgcat 243  Q
     | |||||||||||    
T  4861906 atccacacatgcat 4861893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 28041243 - 28041043
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| |||||||||||||   | ||||||  ||| ||||||||| || ||||||||||||||| |||||| ||||||||||||||||||  |||    
T  28041243 tttgaactctatgtagaaggtcaaccgcctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacctgttgattgtcagaacacacttt 28041144  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    ||||||||||||||||||| |||||||   ||||||  ||   | ||| || ||||||| || ||| |||||||| |||||| ||||| |||||||||||    
T  28041143 ctcatgtttggccactttgtttgacgcggattttagagctgcctatcctacggtaaaaggtccgacacctaatcccacaagtagtgaaaccccagtcaag 28041044  T
Q  231 t 231  Q
    |    
T  28041043 t 28041043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 72 - 231
Target Start/End: Original strand, 19035479 - 19035638
Alignment:
Q  72 aaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggacta 171  Q
    |||||| || || |||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||     
T  19035479 aaaccgtaagtgtcaaaagtaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcagcttttagggctg 19035578  T
Q  172 aatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagt 231  Q
      || || || ||||||| || ||| |||||||| |||| |||||||  |||||||||||    
T  19035579 cctgccctacggtaaaaggtccgacacctaatcccacaactggtgaaatcccagtcaagt 19035638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 21472994 - 21473123
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| | | ||||||  ||| |||| | || || ||||||||||||||| |||||||||||||||||||||||||| |||    
T  21472994 tttgaactctatgtagaaggtcaacagcctctggtgctaggaaactgcaagtgtcaaaagcaaatggtataaaaacatgttgattgtcagaacacgcttt 21473093  T
Q  131 ctcatgtttggccactttgcttgacgcatc 160  Q
    |||||||||||||| ||| |||||||||||    
T  21473094 ctcatgtttggccattttacttgacgcatc 21473123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 251
Target Start/End: Complemental strand, 45659751 - 45659542
Alignment:
Q  44 tagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggcc 143  Q
    ||||||||||| | | ||||||  ||| ||| ||||| || ||||||||||||||| |||| ||||||||||||||||||||| |||||| |||||||||    
T  45659751 tagaaggtcaacagcctctggtgataggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcagaacacgctttctcgtgtttggcc 45659652  T
Q  144 actttgcttgacgcatctttt-aggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgca 242  Q
    || || ||||||||| ||||| ||| ||  |||||| || |||||||  | ||  |||||||| |||||||||||| ||||||||||||  || ||||||    
T  45659651 accttacttgacgcagcttttaagggctgcatgtcctacggtaaaaggcccgatacctaatcccacaagtggtgaaaccccagtcaagtctacgcatgca 45659552  T
Q  243 t-ttttcctc 251  Q
    | ||||||||    
T  45659551 tgttttcctc 45659542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 22346886 - 22347010
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||||||||||||||||| ||| |||| |  ||| ||||||||| || |||||||||| |||| |||  ||||||||||||||||||||| |||    
T  22346886 tttgaactctgtgtagaaggtcaacaacctctgctactaggaaaccgaaagtgtcaaaagcaaaaggtataaacgcatgttgattgtcagaacacgcttt 22346985  T
Q  131 ctcatgtttggccactttgcttgac 155  Q
    ||||| |||||||||||||||||||    
T  22346986 ctcatatttggccactttgcttgac 22347010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 249
Target Start/End: Original strand, 2764481 - 2764688
Alignment:
Q  42 tgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttgg 141  Q
    ||||||||||||| ||| |||| |  ||| || | |||| || |||||| |||||| | |||| ||||||||||||| |||||||||||||||||||||     
T  2764481 tgtagaaggtcaacaacctctgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaagcatgttgattgtcggaacacgttttctcatgtttga 2764580  T
Q  142 ccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgc 241  Q
    ||||||||  |||| || |||||||||||   | ||| ||| ||||||  |  |||||||| || |||||||||||| || || ||||||||||||||||    
T  2764581 ccactttgtctgacacaacttttaggactgcctatcctaccataaaagcaccaacccctaaacccacaagtggtgaaacctcaatcaagttcacacatgc 2764680  T
Q  242 atttttcc 249  Q
    || |||||    
T  2764681 atgtttcc 2764688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 2898693 - 2898832
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacg---- 126  Q
    |||||||||| ||||||||||||| ||| ||||||  ||| ||||||||| |  ||||||||||||||| |||||| | |||||||||||||||||        
T  2898693 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtatcaaaagcaaatggtataaaaac-tattgattgtcagaacacgctca 2898791  T
Q  127 ttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
     ||||||||||||||||||||||||||| ||||||||||||    
T  2898792 ctttctcatgtttggccactttgcttgatgcatcttttagg 2898832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 20259913 - 20259777
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||||||||| ||| ||||||  ||  ||||||||| || ||| |  |||||||| |||||||||||||||||||||||||| |||    
T  20259913 tttgaactctatgtagaaggtcaacaacctctggtgctaagaaaccgaaagtgtcaacaataaatggtataaaaacatgttgattgtcagaacacgcttt 20259814  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||| |||  ||||||||||||||| | ||||||||    
T  20259813 ctcatttttaaccactttgcttgacgtagcttttagg 20259777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 31737439 - 31737303
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||||| ||||||| ||||| | | |||  |  ||||||| ||||| || ||||| ||||||||| |||| ||||||||||||||||| | |||||    
T  31737439 tttgaactctatgtagaatgtcaatagcctctaatgctagaaaatcgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtcagaatatgtttt 31737340  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    |||||||||||||||||||||||||||  ||||||||    
T  31737339 ctcatgtttggccactttgcttgacgccgcttttagg 31737303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 50314741 - 50314619
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| ||||||| ||||| ||||||| || |||| |||   |||||| |||||| |||||||| |||| |||||||||||| |||||| ||||    
T  50314741 ctttgaactctatgtagaaagtcaacaacatcttgtgttaggaaataaaaaatgtcaaaagtaaatggtataaaagcatgttgattgtgagaacaagttt 50314642  T
Q  130 tctcatgtttggccactttgctt 152  Q
    | ||||||||| |||||||||||    
T  50314641 tgtcatgtttgaccactttgctt 50314619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 25375891 - 25375762
Alignment:
Q  89 agcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaa 188  Q
    ||||||||||| |||||||||||||| || |||||| ||||| |||||||||| |||||||||||||||| ||||| |   |   ||||| |||||||||    
T  25375891 agcaaatggtataaaaacatgttgatggtaagaacatgttttgtcatgtttggtcactttgcttgacgcaacttttggagttgtctgtcctaccgtaaaa 25375792  T
Q  189 gttcagacccctaatccaacaagtggtgaa 218  Q
    | || |||||||||||| || ||| |||||    
T  25375791 gctctgacccctaatccgacgagtagtgaa 25375762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 50161472 - 50161397
Alignment:
Q  92 aaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||| || |||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  50161472 aaatgatataaaagcatgttgattgtgagaacacgctttctcatgtttgtccactttgcttgacgcaacttttagg 50161397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 15584912 - 15584988
Alignment:
Q  78 aaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttga 154  Q
    |||||| |||| |||||||||| | |||||||||||||||||||| ||||||||  |||||||  ||||||||||||    
T  15584912 aaaatgtcaaacgcaaatggtatagaaacatgttgattgtcagaatacgttttccaatgtttgatcactttgcttga 15584988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 42919921 - 42919986
Alignment:
Q  101 aaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||||||||||||||| |||||||| |||||||||||||||| ||||| |||| ||| ||||||||    
T  42919921 aaaaacatgttgattgtgagaacacg-tttctcatgtttggccgctttgtttgatgcaacttttagg 42919986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 16500079 - 16500183
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgt 184  Q
    ||||||||||| ||| |||  |||||| ||||| |||||| ||||||| || |||||||||||| | ||||||| ||||||||| |   ||||| |||||    
T  16500079 caaaagcaaatagtataaaggcatgttaattgttagaacatgttttcttatatttggccactttacgtgacgcaacttttaggattgtctgtcctaccgt 16500178  T
Q  185 aaaag 189  Q
    |||||    
T  16500179 aaaag 16500183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 23043929 - 23044000
Alignment:
Q  92 aaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttt 163  Q
    |||||||| |||| |||||||||||| || ||  |||||||||| |||||||||||||||||| ||| ||||    
T  23043929 aaatggtataaaagcatgttgattgtgagtacttgttttctcatatttggccactttgcttgatgcagcttt 23044000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 38731599 - 38731704
Alignment:
Q  30 ctttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttt 129  Q
    ||||||||||| |||||||||| || ||| ||||||  ||  || || ||| |  ||||||||||| ||| ||||  |||||||||||||||||||| ||    
T  38731599 ctttgaactctatgtagaaggttaacaacctctggtgctaagaagccaaaagtttcaaaagcaaattgtataaaagtatgttgattgtcagaacacgctt 38731698  T
Q  130 tctcat 135  Q
    ||||||    
T  38731699 tctcat 38731704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 36486904 - 36487000
Alignment:
Q  58 catctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttga 154  Q
    ||||||||  || |||||| ||| || |||||||||||  || ||||| || |||||||||| |||||| |||||||| |||| ||||||| |||||    
T  36486904 catctggtgataaaaaaccaaaagtgtcaaaagcaaattatataaaaagatattgattgtcaaaacacgctttctcatatttgaccactttacttga 36487000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 118
Target Start/End: Complemental strand, 24177627 - 24177540
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtc 118  Q
    |||||||||| |||||||||| || | | |||| |  ||| ||||||||| || ||||| ||||||||| ||||| ||||||||||||    
T  24177627 tttgaactctatgtagaaggtaaacagcctctgatgctaggaaaccgaaactgtcaaaaacaaatggtataaaaatatgttgattgtc 24177540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 35387699 - 35387653
Alignment:
Q  108 tgttgattgtcagaacacgttttctcatgtttggccactttgcttga 154  Q
    ||||||| ||||||||||  ||| |||||||||||||||||||||||    
T  35387699 tgttgatcgtcagaacacactttttcatgtttggccactttgcttga 35387653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 7433268 - 7433340
Alignment:
Q  85 caaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgc 157  Q
    |||| |||||||||| ||||| | ||||||| |  |||||| ||||||||| ||||  |||||||||||||||    
T  7433268 caaatgcaaatggtataaaaatacgttgattttatgaacacattttctcatatttgatcactttgcttgacgc 7433340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 247
Target Start/End: Complemental strand, 47600 - 47439
Alignment:
Q  86 aaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgta 185  Q
    |||||||||||||| ||||| ||||| | ||||||||||| |||||||||||||||||| ||| ||||||||| ||||||||  ||  ||||| ||||||    
T  47600 aaaagcaaatggtataaaaatatgttaactgtcagaacacattttctcatgtttggccattttacttgacgcaacttttaggtttatttgtcctaccgta 47501  T
Q  186 aaagt-tcagacccctaatccaacaagtggtgaagccccagtcaagttcacacatgcattttt 247  Q
    ||||| ||| | ||||||||| |||||||||||| ||||| |||||| ||||| |||||||||    
T  47500 aaagtctca-atccctaatcccacaagtggtgaaaccccaatcaagtccacacttgcattttt 47439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 300 - 79
Alignment:
Q  31 tttgaactctgtgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgtttt 130  Q
    |||||||| | || |||||||||| ||| | ||||  ||||||||| ||| || ||||  ||||||||| |||| ||||||||| |||| ||| |  | |    
T  300 tttgaactttatgcagaaggtcaacaacctttggtactagaaaaccaaaagtgtcaaacacaaatggtataaaagcatgttgatggtcataacccactgt 201  T
Q  131 ctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaagccccagtcaag 230  Q
    ||||||||||||||||||||||||||||  ||||||| ||   ||||| || |||||||  | ||| | |||||| |||||||||||| |||||||||||    
T  200 ctcatgtttggccactttgcttgacgcagtttttagggctgcctgtcctacagtaaaaggcccgacacttaatcccacaagtggtgaaaccccagtcaag 101  T
Q  231 ttcacacatgcat-ttttcctc 251  Q
    |  | |||||||| ||||||||    
T  100 tctatacatgcatgttttcctc 79  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 103108 - 103228
Alignment:
Q  42 tgtagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttgg 141  Q
    ||||||||||||| | | ||||||  ||| ||||||||| || ||||||||||||||| |||| ||||||||||||||| ||||| |||||| |||||||    
T  103108 tgtagaaggtcaacagcctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtcag-acacgctttctcgtgtttgg 103206  T
Q  142 ccactttgcttgacgcatcttt 163  Q
    |||  || ||||||||| ||||    
T  103207 ccatcttacttgacgcagcttt 103228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 16195 - 16307
Alignment:
Q  101 aaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccct 200  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| |||| |||||||| |||||||   |   ||||| ||  ||||||||| || ||||    
T  16195 aaaaacatgtttattgtcagaacatgttttctcatgtttggccattttgtttgacgcagcttttagcgttgtctgtcctactataaaagttccgatccct 16294  T
Q  201 aatccaacaagtg 213  Q
    |||||||||||||    
T  16295 aatccaacaagtg 16307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 10364 - 10542
Alignment:
Q  44 tagaaggtcaaaaacatctggttttagaaaaccgaaaatgccaaaagcaaatggtagaaaaacatgttga----ttgtcagaacacgttttctcatgttt 139  Q
    ||||||||||| ||| ||||||  ||| || ||  || || ||||||||||||||| |||| ||||||||    |||||||||||||  || ||||||||    
T  10364 tagaaggtcaacaacctctggtgctaggaagccacaagtgtcaaaagcaaatggtataaaagcatgttgattgattgtcagaacacgcattatcatgttt 10463  T
Q  140 ggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaaagttcagacccctaatccaacaagtggtgaa 218  Q
    ||||| ||| ||||||||| |||||||| ||   |||||||| |||||||  |  ||||||||||| || |||||||||    
T  10464 ggccattttacttgacgcaacttttagggctgcttgtccaactgtaaaagccccaacccctaatcccacgagtggtgaa 10542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 49447 - 49538
Alignment:
Q  76 cgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||| || ||||||||||||||| |||| || |||||||||||||||||| |||||||  |||| |||||||| |||| ||| ||||||||    
T  49447 cgaaagtgtcaaaagcaaatggtataaaagcacgttgattgtcagaacacgatttctcacatttgaccactttgtttgatgcaacttttagg 49538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 8573 - 8525
Alignment:
Q  90 gcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtt 138  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  8573 gcaaatggtataaaaacatgttgattgtcagaacatgttttctcatgtt 8525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 18410 - 18345
Alignment:
Q  101 aaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcatcttttagg 167  Q
    ||||||||||||||||| |||||||| |||||||||||||||| ||||| |||| ||| ||||||||    
T  18410 aaaaacatgttgattgtgagaacacg-tttctcatgtttggccgctttgtttgatgcaacttttagg 18345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 7634 - 7701
Alignment:
Q  72 aaaccgaaaatgccaaaagcaaatggtagaaaaacatgttgattgtcagaacacgttttctcatgttt 139  Q
    |||| |||| || ||||||||||||||  |||| |||||||||||| |||||||| ||||||||||||    
T  7634 aaactgaaagtgtcaaaagcaaatggtttaaaatcatgttgattgtgagaacacgctttctcatgttt 7701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 4366 - 4300
Alignment:
Q  121 aacacgttttctcatgtttggccactttgcttgacgcatcttttaggactaaatgtccaaccgtaaa 187  Q
    |||||||||||||||||||||||||| || |||||| | |||||| ||||   | ||||||||||||    
T  4366 aacacgttttctcatgtttggccactctgtttgacgtagcttttacgactgtctatccaaccgtaaa 4300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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