View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0584_high_17 (Length: 233)
Name: NF0584_high_17
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0584_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 1971322 - 1971185
Alignment:
| Q |
22 |
aataaaatgaatcatttnnnnnnnttgttttcattaataattagtaccacattattttgtataataacattactatattaaggaagaatcaaattaggat |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1971322 |
aataaaatgaatcatttaaaaaaattgttttcattaataattagtaccacattattttgtataataacattactatattaaggatgaatcaaattaggat |
1971223 |
T |
|
| Q |
122 |
ttcaagaaagaatcaacgagaagcatatttcataaaaa |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1971222 |
ttcaagaaagaatcaacgagaagcatatttcataaaaa |
1971185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 2014696 - 2014555
Alignment:
| Q |
66 |
taccacattattttgtataataacattactatattaaggaagaatcaaattaggatttcaagaaagaatcaacgagaagcatatttcataaa---aataa |
162 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||||||||||| ||||||| ||||||| ||||| || || |
|
|
| T |
2014696 |
taccacattattttgtataataacccaactatattaaggatggattaaattaggatttcaagaaagaatccacgagaaacatattttataaatttaaaaa |
2014597 |
T |
|
| Q |
163 |
aaataaacttagtgtgttcgaacaaaatcctaatctattttgt |
205 |
Q |
| |
|
||| ||||||||||| || || ||||||||||||||||||| |
|
|
| T |
2014596 |
aaaaaaacttagtgtctt-gacataaatcctaatctattttgt |
2014555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 159
Target Start/End: Complemental strand, 33080717 - 33080634
Alignment:
| Q |
76 |
ttttgtataataacattactatattaaggaagaatcaaattaggatttcaagaaagaatcaacgagaagcatatttcataaaaa |
159 |
Q |
| |
|
||||||| |||||||| ||||| ||| || ||||||| |||||||||||||||| ||||||| ||| |||||||||| |||| |
|
|
| T |
33080717 |
ttttgtacaataacataactattttacagatgaatcaatttaggatttcaagaaaccatcaacgcgaaacatatttcatcaaaa |
33080634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 185 times since January 2019
Visitors: 3831