View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0584_high_2 (Length: 530)

Name: NF0584_high_2
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0584_high_2
NF0584_high_2
[»] chr1 (38 HSPs)
chr1 (172-501)||(6267679-6268009)
chr1 (16-153)||(6268157-6268293)
chr1 (18-148)||(42400935-42401065)
chr1 (162-254)||(6268040-6268132)
chr1 (18-148)||(33780610-33780740)
chr1 (18-148)||(37583110-37583239)
chr1 (18-123)||(4658988-4659093)
chr1 (50-130)||(8514522-8514602)
chr1 (60-149)||(32544881-32544969)
chr1 (228-311)||(6160473-6160556)
chr1 (228-311)||(39864132-39864215)
chr1 (69-141)||(7712336-7712408)
chr1 (228-311)||(37506145-37506231)
chr1 (69-133)||(51244205-51244269)
chr1 (264-311)||(31154185-31154232)
chr1 (228-311)||(40144861-40144944)
chr1 (228-311)||(49224000-49224083)
chr1 (261-311)||(3312165-3312215)
chr1 (230-311)||(24880899-24880980)
chr1 (259-311)||(32970581-32970633)
chr1 (69-141)||(35615614-35615686)
chr1 (228-311)||(12039103-12039186)
chr1 (228-311)||(15699143-15699226)
chr1 (260-311)||(16395061-16395112)
chr1 (74-141)||(33259558-33259625)
chr1 (74-141)||(33279717-33279784)
chr1 (69-124)||(42488942-42488997)
chr1 (260-311)||(43614450-43614501)
chr1 (331-365)||(17988486-17988520)
chr1 (267-368)||(31042857-31042959)
chr1 (261-311)||(44761545-44761595)
chr1 (261-306)||(7351690-7351735)
chr1 (228-309)||(7759236-7759317)
chr1 (228-309)||(14757610-14757691)
chr1 (228-308)||(6023666-6023746)
chr1 (320-368)||(7439871-7439919)
chr1 (263-311)||(28749047-28749095)
chr1 (231-311)||(41121839-41121919)
[»] chr3 (33 HSPs)
chr3 (18-131)||(24744471-24744584)
chr3 (16-122)||(30285083-30285189)
chr3 (18-148)||(40485153-40485283)
chr3 (37-141)||(51463525-51463629)
chr3 (228-308)||(54477473-54477553)
chr3 (67-141)||(377032-377106)
chr3 (228-311)||(30190671-30190754)
chr3 (69-141)||(31720272-31720344)
chr3 (260-311)||(12736583-12736634)
chr3 (228-311)||(45710871-45710954)
chr3 (260-311)||(51837970-51838021)
chr3 (67-141)||(7885889-7885963)
chr3 (67-141)||(48457854-48457928)
chr3 (258-311)||(14194606-14194659)
chr3 (69-141)||(17378670-17378742)
chr3 (263-311)||(29023977-29024025)
chr3 (263-311)||(34750552-34750600)
chr3 (228-370)||(37695616-37695760)
chr3 (260-308)||(44301615-44301663)
chr3 (69-141)||(50345879-50345951)
chr3 (264-311)||(11905879-11905926)
chr3 (228-311)||(24569111-24569194)
chr3 (228-311)||(43253874-43253957)
chr3 (228-311)||(54726506-54726589)
chr3 (263-309)||(30711129-30711175)
chr3 (229-311)||(37311972-37312054)
chr3 (263-359)||(10366604-10366701)
chr3 (263-311)||(8679065-8679113)
chr3 (275-311)||(17652816-17652852)
chr3 (263-311)||(19823067-19823115)
chr3 (37-148)||(31153461-31153571)
chr3 (263-311)||(37497548-37497596)
chr3 (67-131)||(53143484-53143548)
[»] chr2 (26 HSPs)
chr2 (37-125)||(21455163-21455251)
chr2 (18-82)||(39401690-39401754)
chr2 (67-131)||(39445797-39445860)
chr2 (228-311)||(41220955-41221038)
chr2 (228-311)||(43115811-43115894)
chr2 (67-141)||(11512036-11512110)
chr2 (67-141)||(18379780-18379853)
chr2 (259-311)||(39691542-39691594)
chr2 (228-311)||(15359096-15359179)
chr2 (261-311)||(16805935-16805985)
chr2 (261-311)||(16845216-16845266)
chr2 (261-311)||(34120448-34120498)
chr2 (228-309)||(43410447-43410528)
chr2 (263-311)||(16463745-16463793)
chr2 (228-311)||(39785606-39785692)
chr2 (325-368)||(5789599-5789642)
chr2 (37-148)||(9707352-9707462)
chr2 (260-311)||(19937730-19937781)
chr2 (228-311)||(25637502-25637585)
chr2 (86-140)||(36266925-36266979)
chr2 (74-144)||(39401441-39401511)
chr2 (263-311)||(8947061-8947109)
chr2 (228-308)||(35242309-35242389)
chr2 (259-311)||(36173351-36173403)
chr2 (263-311)||(36794340-36794388)
chr2 (55-130)||(45047161-45047239)
[»] chr8 (24 HSPs)
chr8 (16-149)||(3348048-3348178)
chr8 (51-131)||(1334144-1334224)
chr8 (32-148)||(9415522-9415641)
chr8 (84-148)||(36597127-36597192)
chr8 (69-141)||(7573205-7573277)
chr8 (260-311)||(4428363-4428414)
chr8 (228-311)||(7172935-7173018)
chr8 (228-311)||(31271042-31271125)
chr8 (67-141)||(1421964-1422037)
chr8 (228-311)||(5356621-5356703)
chr8 (261-359)||(39405816-39405915)
chr8 (228-311)||(42887021-42887104)
chr8 (73-148)||(44104063-44104138)
chr8 (228-311)||(44761506-44761589)
chr8 (261-311)||(12559647-12559697)
chr8 (260-309)||(7703170-7703219)
chr8 (282-311)||(9550000-9550029)
chr8 (274-311)||(39329086-39329123)
chr8 (263-311)||(1875604-1875652)
chr8 (263-311)||(5053165-5053213)
chr8 (261-309)||(27294073-27294121)
chr8 (261-309)||(34057632-34057680)
chr8 (263-311)||(34393966-34394014)
chr8 (263-311)||(36967417-36967465)
[»] chr7 (38 HSPs)
chr7 (16-113)||(33815985-33816082)
chr7 (63-148)||(9486927-9487012)
chr7 (46-96)||(4998921-4998971)
chr7 (263-358)||(759061-759157)
chr7 (60-131)||(33174164-33174234)
chr7 (67-129)||(42710603-42710664)
chr7 (69-141)||(37503823-37503895)
chr7 (228-311)||(19271751-19271834)
chr7 (228-311)||(21760002-21760085)
chr7 (228-311)||(41506083-41506166)
chr7 (263-368)||(83448-83554)
chr7 (263-368)||(16560530-16560636)
chr7 (263-368)||(16605026-16605132)
chr7 (37-148)||(17000631-17000742)
chr7 (101-141)||(19987103-19987143)
chr7 (263-311)||(38391811-38391859)
chr7 (228-311)||(3178222-3178305)
chr7 (260-311)||(7463273-7463324)
chr7 (228-311)||(21390323-21390406)
chr7 (228-311)||(34947528-34947611)
chr7 (102-141)||(34975685-34975723)
chr7 (67-141)||(958116-958189)
chr7 (273-311)||(13962032-13962070)
chr7 (261-311)||(22738762-22738812)
chr7 (228-359)||(26974054-26974189)
chr7 (95-148)||(33202865-33202918)
chr7 (282-311)||(44433961-44433990)
chr7 (326-358)||(16904506-16904538)
chr7 (263-311)||(24516307-24516355)
chr7 (29-149)||(27828755-27828868)
chr7 (263-311)||(27921051-27921099)
chr7 (263-311)||(40076378-40076426)
chr7 (263-311)||(42935724-42935772)
chr7 (263-311)||(43873986-43874034)
chr7 (263-311)||(44180268-44180316)
chr7 (73-141)||(44484112-44484180)
chr7 (275-311)||(48608937-48608973)
chr7 (228-311)||(49101691-49101777)
[»] chr6 (16 HSPs)
chr6 (67-141)||(33099618-33099692)
chr6 (69-141)||(31632439-31632511)
chr6 (228-311)||(1063613-1063696)
chr6 (67-131)||(24141322-24141386)
chr6 (263-311)||(29363362-29363410)
chr6 (166-231)||(31632532-31632598)
chr6 (263-311)||(27448166-27448214)
chr6 (18-84)||(31766219-31766285)
chr6 (67-148)||(378848-378929)
chr6 (331-368)||(1955931-1955968)
chr6 (260-309)||(7072213-7072262)
chr6 (67-124)||(11703287-11703344)
chr6 (263-311)||(11655956-11656004)
chr6 (263-311)||(13087586-13087634)
chr6 (263-311)||(31894220-31894268)
chr6 (263-311)||(32440655-32440703)
[»] chr5 (24 HSPs)
chr5 (69-147)||(4942534-4942612)
chr5 (229-309)||(4441043-4441123)
chr5 (275-357)||(3076658-3076740)
chr5 (67-124)||(30471687-30471744)
chr5 (69-124)||(8681471-8681526)
chr5 (263-365)||(9515802-9515905)
chr5 (228-311)||(21060651-21060734)
chr5 (228-311)||(27580621-27580704)
chr5 (228-309)||(7827937-7828018)
chr5 (260-368)||(32440194-32440303)
chr5 (228-308)||(11796179-11796259)
chr5 (67-131)||(15558527-15558591)
chr5 (259-306)||(11761313-11761359)
chr5 (228-311)||(27542816-27542899)
chr5 (67-130)||(36974250-36974311)
chr5 (228-311)||(40899939-40900022)
chr5 (229-311)||(8725018-8725100)
chr5 (229-311)||(29374364-29374446)
chr5 (71-148)||(5495746-5495823)
chr5 (71-148)||(13906093-13906170)
chr5 (258-311)||(15439328-15439381)
chr5 (69-141)||(13417377-13417449)
chr5 (263-311)||(40530233-40530281)
chr5 (69-141)||(40976334-40976406)
[»] chr4 (41 HSPs)
chr4 (18-116)||(17694352-17694450)
chr4 (37-148)||(3161819-3161931)
chr4 (228-368)||(11907558-11907699)
chr4 (228-309)||(38502501-38502582)
chr4 (69-141)||(26417145-26417216)
chr4 (69-141)||(32212808-32212879)
chr4 (260-311)||(36985839-36985890)
chr4 (64-130)||(41248285-41248351)
chr4 (228-311)||(42616920-42617003)
chr4 (229-311)||(2653442-2653524)
chr4 (261-307)||(7987028-7987074)
chr4 (261-311)||(16821348-16821398)
chr4 (229-311)||(17114462-17114544)
chr4 (228-305)||(47358972-47359049)
chr4 (228-309)||(47773038-47773119)
chr4 (71-148)||(51997115-51997192)
chr4 (67-131)||(1586389-1586456)
chr4 (263-311)||(32469965-32470013)
chr4 (67-131)||(45047237-45047300)
chr4 (260-368)||(49747014-49747122)
chr4 (263-311)||(52859816-52859864)
chr4 (228-311)||(34360676-34360759)
chr4 (69-124)||(34483634-34483689)
chr4 (228-311)||(40122871-40122954)
chr4 (228-311)||(47464382-47464465)
chr4 (67-141)||(6078026-6078099)
chr4 (261-311)||(7061681-7061731)
chr4 (68-130)||(8757328-8757389)
chr4 (261-311)||(49175951-49176001)
chr4 (263-300)||(19798940-19798977)
chr4 (228-309)||(25233202-25233283)
chr4 (263-308)||(26147635-26147680)
chr4 (67-144)||(40946337-40946414)
chr4 (258-311)||(51625134-51625187)
chr4 (263-311)||(2942662-2942710)
chr4 (263-311)||(3689618-3689666)
chr4 (231-311)||(5841444-5841524)
chr4 (263-311)||(6609817-6609865)
chr4 (263-311)||(6643677-6643725)
chr4 (263-311)||(35380350-35380398)
chr4 (263-299)||(37988950-37988986)
[»] scaffold0092 (1 HSPs)
scaffold0092 (67-148)||(4933-5015)
[»] scaffold0110 (1 HSPs)
scaffold0110 (228-311)||(1725-1808)
[»] scaffold0040 (1 HSPs)
scaffold0040 (102-148)||(55915-55961)
[»] scaffold0067 (1 HSPs)
scaffold0067 (67-124)||(212-269)
[»] scaffold0302 (1 HSPs)
scaffold0302 (263-311)||(16154-16202)
[»] scaffold0003 (1 HSPs)
scaffold0003 (263-311)||(39144-39192)
[»] scaffold0464 (1 HSPs)
scaffold0464 (272-311)||(6296-6335)
[»] scaffold0159 (1 HSPs)
scaffold0159 (325-368)||(33972-34015)
[»] scaffold0095 (1 HSPs)
scaffold0095 (261-359)||(50258-50357)
[»] scaffold0583 (1 HSPs)
scaffold0583 (263-311)||(2081-2129)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 172 - 501
Target Start/End: Complemental strand, 6268009 - 6267679
Alignment:
Q  172 gggtacctatttagtaccgagtcataaatgataaagatctcaccattgaggatggtcttaactactccattgactacaatcattacaagtattttagtac 271  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||    
T  6268009 gggtacctatttggtaccgagtcataaatgataaagatctcaccattgaggatggtcttaactactccattgactacaaccattaaaaatattttagtac 6267910  T
Q  272 atgatactagttttatcattaaaatcaacacaattaatcannnnnnnnaaa-tagtgcacaaaccttaaatgactattattttgagacgaaggaagtagt 370  Q
    ||||||||||||||||||||||||||||||||||||||||        ||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  6267909 atgatactagttttatcattaaaatcaacacaattaatcatttctttaaaaatagtgcacaaaccttaaacgactattattttgagacgaaggaagtagt 6267810  T
Q  371 atttatcattcagnnnnnnntgataattatggaattattaataataaagaaagtaattttgaaaaactaacacctactatttacaaatttattaagatga 470  Q
    |||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6267809 atttatcattcagaaaaaaatgataattatggaattattaataataatgaaagtaattttgaaaaactaacacctactatttacaaatttataaagatga 6267710  T
Q  471 attgattttttaagatatatttacattagat 501  Q
    ||||||||||||| |||||||||||||||||    
T  6267709 attgattttttaaaatatatttacattagat 6267679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 6268293 - 6268157
Alignment:
Q  16 atgtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaataaaaaa-tagtgtggggttcacttaagaatga 114  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  6268293 atgtctaaatcaatcccacctctaacttttcattatttaca--ccaacaatacaatgattattttaataaaaaaatagtgtgaggtccacttaagaatga 6268196  T
Q  115 gggtcttaagtgagaccatgggtcttagaagaccacccc 153  Q
    ||||| ||||| |||||||||||||||||||||| ||||    
T  6268195 gggtcataagttagaccatgggtcttagaagaccccccc 6268157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 42401065 - 42400935
Alignment:
Q  18 gtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgaggg 117  Q
    |||||||||  ||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  42401065 gtctaaatcggtcccaccacgaactcttcatcatttacattccaacaatacaatgattattttaataaaaagtagtgtggggtccacttaagaataaggg 42400966  T
Q  118 tcttaagtgagaccatgggtcttagaagacc 148  Q
    |||||||||||||| ||||||||||||||||    
T  42400965 tcttaagtgagaccctgggtcttagaagacc 42400935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 6268132 - 6268040
Alignment:
Q  162 ttccccaatggggtacctatttagtaccgagtcataaatgataaagatctcaccattgaggatggtcttaactactccattgactacaatcat 254  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6268132 ttccccaatggggtacctatttggtaccgagtcataaatgataaagatctcaccattgaggatggtcttaactactccattgactacaatcat 6268040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 33780610 - 33780740
Alignment:
Q  18 gtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgaggg 117  Q
    ||||||||| |||||||  |||| | ||||| |||||| ||||||||||||||||||||||||||| |||| |||||||| || ||||||||||||   |    
T  33780610 gtctaaatcgatcccactactaattcttcatcatttacgttccaacaatacaatgattattttaatgaaaagtagtgtggagtccacttaagaatggaag 33780709  T
Q  118 tcttaagtgagaccatgggtcttagaagacc 148  Q
    |||||||||||||  |  |||||||||||||    
T  33780710 tcttaagtgagactctaagtcttagaagacc 33780740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 37583110 - 37583239
Alignment:
Q  18 gtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgaggg 117  Q
    |||||||||  | ||||| || ||| ||||| ||||||||| |||| |||||||||||||||||||||||| ||||||| ||| ||||||| |||| |||    
T  37583110 gtctaaatcggttccaccactgactcttcatcatttacatttcaacgatacaatgattattttaataaaaagtagtgtgaggtccacttaaaaatg-ggg 37583208  T
Q  118 tcttaagtgagaccatgggtcttagaagacc 148  Q
    |||||||||||||  || || ||||||||||    
T  37583209 tcttaagtgagactttgagttttagaagacc 37583239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 4658988 - 4659093
Alignment:
Q  18 gtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgaggg 117  Q
    ||||||||  |||| ||| |||||| ||||| ||||| |||||||||||| ||||||||||||||||||||  || ||||| | |||||||||||||| |    
T  4658988 gtctaaattgatccaaccactaactcttcatcatttatattccaacaatataatgattattttaataaaaagcagcgtgggatccacttaagaatgagag 4659087  T
Q  118 tcttaa 123  Q
    ||||||    
T  4659088 tcttaa 4659093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 8514602 - 8514522
Alignment:
Q  50 atttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagac 130  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| ||  ||||||| |||||  ||||||||||||||    
T  8514602 atttacattctaacaatacaatgattattttaataaaaagtagtgtgaggcccacttaaaaatgaaagtcttaagtgagac 8514522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 32544969 - 32544881
Alignment:
Q  60 caacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtcttagaagacca 149  Q
    ||||| ||||||||||||||||||||||| || | | |||| |||||||||||||||||||||||||||||  ||| || ||||||||||    
T  32544969 caacattacaatgattattttaataaaaa-tattatagggtccacttaagaatgagggtcttaagtgagactttggatcatagaagacca 32544881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 6160556 - 6160473
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| |||||| |||||||| | ||  |||||||||||| || |||||| |||||||||| |||||||||||||||||||    
T  6160556 cttaactattccattaactacaattaataagagtattttagtaaataatactaattttatcattgaaatcaacacaattaatca 6160473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 39864132 - 39864215
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||  |||||||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  39864132 cttaactactccactaactacaattaataagagtattttagtaaatgctactaattttaccattgaaatcaacacaattaatca 39864215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 7712336 - 7712408
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||| | |||| | |||||| || |||||||||||  ||||||||||||||||| |||||||||    
T  7712336 aatgattattttatttaaaagttgtgtggagtccacttaagaattggggtcttaagtgagaccctgggtctta 7712408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 37506145 - 37506231
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgata---ctagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | || |||| |||||||| ||||||   ||| ||||||||| ||||||||||||||||||||    
T  37506145 cttaactactccactaactacaattaataaaagtgttttagtaaatgatagtactaattttatcatcaaaatcaacacaattaatca 37506231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 51244205 - 51244269
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccat 133  Q
    ||||||||||||| | |||| | ||||||||| ||||||||| ||||| ||||||||||||||||    
T  51244205 aatgattattttattgaaaagtggtgtggggtccacttaagattgaggatcttaagtgagaccat 51244269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 31154185 - 31154232
Alignment:
Q  264 tttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||| || |||||| ||||||||||||||||||||||||||||||    
T  31154185 tttagtagataatactaattttatcattaaaatcaacacaattaatca 31154232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 40144944 - 40144861
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||||| |||||||| | ||   || |||||||| |||||| || ||||| ||| ||||||||||||||||||||    
T  40144944 cttaactactccattaactacaattaataagggtgttttagtaaatgatattaattttaccatcaaaatcaacacaattaatca 40144861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 49224083 - 49224000
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||   || |||||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  49224083 cttaactactccactaactacaattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 49224000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 3312165 - 3312215
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||| ||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  3312165 tattatagtaaatgatactaatttaatcattaaaatcaacacaattaatca 3312215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 24880899 - 24880980
Alignment:
Q  230 taactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||| | |||||||| | || ||||||||||||| |||||| || ||||| |||| ||||||||| ||| |||||    
T  24880899 taactactccactaactacaattaataaaagtattttagtaaatgatattaattttaccattgaaatcaacataatcaatca 24880980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 32970633 - 32970581
Alignment:
Q  259 agtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||||| || ||| || |||||||||| |||||||||||||||||||    
T  32970633 agtattttagtaaataatattaattttatcattgaaatcaacacaattaatca 32970581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 35615614 - 35615686
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||| | |||| | ||||||| | ||||||| |||||||||||||||| ||||| | |||||||    
T  35615614 aatgattattttatttaaaagtggtgtgggatccacttaaaaatgagggtcttaagtaagaccctaggtctta 35615686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 12039103 - 12039186
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||| ||||||||| |||||||| | ||  ||| | |||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  12039103 cttaaatactccattaactacaattaataagagtgtattagtaaatgttactaattttaccattgaaatcaacacaattaatca 12039186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 15699143 - 15699226
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||   || |||||||| |||||| || ||||| ||| ||||||||||||||||||||    
T  15699143 cttaactactccactaactacaattaataagggtgttttagtaaatgatattaattttaccatcaaaatcaacacaattaatca 15699226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 16395112 - 16395061
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||| ||||||||| |||||  || ||||||||||||||||||||    
T  16395112 gtattttagtaaatgatactaattttactatcaaaatcaacacaattaatca 16395061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 33259558 - 33259625
Alignment:
Q  74 ttattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    |||||||| |||||| | ||||||||| |||||||||||| || || |||||||||||  ||||||||    
T  33259558 ttattttattaaaaagtggtgtggggtccacttaagaatggggatcataagtgagaccccgggtctta 33259625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 33279717 - 33279784
Alignment:
Q  74 ttattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    |||||||| |||||| | ||||||||| |||||||||||| || || |||||||||||  ||||||||    
T  33279717 ttattttattaaaaagtggtgtggggtccacttaagaatggggatcataagtgagaccccgggtctta 33279784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 42488997 - 42488942
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaag 124  Q
    ||||||||||||| | |||| | ||||||||||||||||||| ||||| |||||||    
T  42488997 aatgattattttattgaaaagtggtgtggggttcacttaagattgaggatcttaag 42488942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 43614450 - 43614501
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||  ||||||||| ||||| |||||||||||||||| |||||||    
T  43614450 gtattttagtcaatgatactaattttaccattaaaatcaacacacttaatca 43614501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 365
Target Start/End: Complemental strand, 17988520 - 17988486
Alignment:
Q  331 aaaccttaaatgactattattttgagacgaaggaa 365  Q
    ||||||||||||||||||||||||||||| |||||    
T  17988520 aaaccttaaatgactattattttgagacggaggaa 17988486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 368
Target Start/End: Original strand, 31042857 - 31042959
Alignment:
Q  267 agtacatgatactagttttatcattaaaatcaacacaattaatcannnnnnnna-aatagtgcacaaaccttaaatgactattattttgagacgaaggaa 365  Q
    |||| ||||||||| ||||| |||| |||||||||||||||||||        | |||  ||||||||||||||||||||| |||| ||||||| ||| |    
T  31042857 agtaaatgatactaattttaccattgaaatcaacacaattaatcatttccttaataatcatgcacaaaccttaaatgactaatattgtgagacggaggga 31042956  T
Q  366 gta 368  Q
    |||    
T  31042957 gta 31042959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 44761595 - 44761545
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||| |||||| || ||||||||||||||| |||| |||||||||    
T  44761595 tattttagtaaatgatattaattttatcattaaaattaacataattaatca 44761545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 7351690 - 7351735
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaatt 306  Q
    |||||||||| || ||| || |||||||||||||||||||||||||    
T  7351690 tattttagtaaataatattaattttatcattaaaatcaacacaatt 7351735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 7759236 - 7759317
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    |||||||| |||| | |||||||| | ||  |||||||||||| |||||| || ||| | |||| |||||||||||||||||    
T  7759236 cttaactattccactaactacaattaataagagtattttagtaaatgatattaatttcaccattgaaatcaacacaattaat 7759317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 309
Target Start/End: Complemental strand, 14757691 - 14757610
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    |||||||||| || | |||||||| | ||  ||| |||||||| ||| ||||| ||||||| || |||||||||||||||||    
T  14757691 cttaactacttcactaactacaattaataagagtgttttagtaaatgttactaattttatcgttgaaatcaacacaattaat 14757610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 6023746 - 6023666
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaa 308  Q
    ||||||||||||| | |||||||| | || | ||||||||||| | | |||||  |||| |||| ||||||||||||||||    
T  6023746 cttaactactccaataactacaattaataaaggtattttagtaaaagctactaaatttaccattgaaatcaacacaattaa 6023666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 7439919 - 7439871
Alignment:
Q  320 aaatagtgcacaaaccttaaatgactattattttgagacgaaggaagta 368  Q
    |||| ||||| |||||||||| |||||||||||||||||| | ||||||    
T  7439919 aaatcgtgcaaaaaccttaaacgactattattttgagacgcatgaagta 7439871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 28749047 - 28749095
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  28749047 ttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 28749095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 41121919 - 41121839
Alignment:
Q  231 aactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||| | |||||||| | ||   ||||||||||| || || ||| ||||| ||| ||||||||||||||||||||    
T  41121919 aactactccactaactacaattaataagggtattttagtaaattatgctaattttaccatcaaaatcaacacaattaatca 41121839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 24744471 - 24744584
Alignment:
Q  18 gtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgaggg 117  Q
    ||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||  ||    
T  24744471 gtctaaatcgatcccaccactaactcttcatcatttacattccaacaatacaatgattattttaataaaaagtagtgtgggatccacttaagaatggagg 24744570  T
Q  118 tcttaagtgagacc 131  Q
    |||||||| |||||    
T  24744571 tcttaagtaagacc 24744584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 30285189 - 30285083
Alignment:
Q  16 atgtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgag 115  Q
    ||||||||||| |||| ||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  30285189 atgtctaaatcgatccaaccactaactcttcataatttacatttcaacaatacaatgattattttaataaaaaatagtgtggggcccacttaaaaatgag 30285090  T
Q  116 ggtctta 122  Q
    |||||||    
T  30285089 ggtctta 30285083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 40485153 - 40485283
Alignment:
Q  18 gtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgaggg 117  Q
    |||||||||  ||||||| | |||| ||||  |||||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||| | |     
T  40485153 gtctaaatcggtcccaccaccaactcttcagcatttacattccaacaaaacaatgattattttaataaaaagtagtgtgaggtccacttaagaataatga 40485252  T
Q  118 tcttaagtgagaccatgggtcttagaagacc 148  Q
    |||||||||||| | | | ||||||||||||    
T  40485253 tcttaagtgagatcctcgatcttagaagacc 40485283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 51463629 - 51463525
Alignment:
Q  37 ctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatggg 136  Q
    |||||| ||||||||||| ||| ||||| || |||||||||||||| ||| | ||||||||||| |||||||||||| || |||||||||| ||| ||||    
T  51463629 ctaactcttcattatttatatttcaacagtaaaatgattattttaacaaagagtagtgtggggtccacttaagaatgtggatcttaagtgacaccctggg 51463530  T
Q  137 tctta 141  Q
    |||||    
T  51463529 tctta 51463525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 54477553 - 54477473
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaa 308  Q
    ||||||||||||||| |||||||| | || || |||||||||| |||||| || ||||| |||||||||||||||||||||    
T  54477553 cttaactactccattaactacaattaataaaaatattttagtaaatgatattaattttaccattaaaatcaacacaattaa 54477473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 377106 - 377032
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||| ||||||||| |||||| | ||||| ||| |||||||||||||| ||||||||||||||| |||||||||    
T  377106 acaatcattattttattaaaaagtggtgtgaggtccacttaagaatgagagtcttaagtgagaccttgggtctta 377032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 30190754 - 30190671
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||   ||||||||||| ||||||||| ||||| |||| |||||||||||||||||||    
T  30190754 cttaactactccactaactacaattaataagggtattttagtaaatgatactaattttaccattgaaatcaacacaattaatca 30190671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 31720272 - 31720344
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||| |||||| | ||||||||| ||||||||| || ||||||||||| ||||| || ||||||    
T  31720272 aatgattattttattaaaaagtggtgtggggtccacttaagattgggggtcttaagttagaccctgagtctta 31720344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 12736634 - 12736583
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  12736634 gtattgtagtaaatgatactaattttatcattagaatcaacacaattaatca 12736583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 45710871 - 45710954
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | || |||| |||||||| |||||| || ||||| ||| |||||||||| |||||||||    
T  45710871 cttaactactccactaactacaattaataaaagtgttttagtaaatgatattaattttaccatcaaaatcaacataattaatca 45710954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 51838021 - 51837970
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||| |||||| || |||||||||| |||||||||||||||||||    
T  51838021 gtattttagtaaatgatattaattttatcattgaaatcaacacaattaatca 51837970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 7885963 - 7885889
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||| ||||||||| |||||| | ||||||| | ||||||||||||  |||||||||||||||| || ||||||    
T  7885963 acaattattattttattaaaaagttgtgtgggatccacttaagaatggaggtcttaagtgagaccctgagtctta 7885889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 48457928 - 48457854
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    |||||||||| |||| |||||| | ||||| | | ||||||||||||| ||||||||||||||||  ||||||||    
T  48457928 acaatgattagtttattaaaaagttgtgtgagatccacttaagaatgaaggtcttaagtgagaccccgggtctta 48457854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 14194606 - 14194659
Alignment:
Q  258 aagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| ||| ||||| |||||||||| |||||||||||||| ||||    
T  14194606 aagtattttagtaaatggtactaattttatcattgaaatcaacacaattgatca 14194659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 17378670 - 17378742
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||| | |||| |  ||||||||  |||||||||||  |||||||||||||| |||||||||||    
T  17378670 aatgattattttatttaaaagtgatgtggggtctacttaagaatggaggtcttaagtgagatcatgggtctta 17378742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 29024025 - 29023977
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  29024025 ttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 29023977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 34750552 - 34750600
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||||||||| ||||| |||||||||||||||||| |||||    
T  34750552 ttttagtaaatgatactaattttaccattaaaatcaacacaatcaatca 34750600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 370
Target Start/End: Complemental strand, 37695760 - 37695616
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatcannnnnnnna-aatagt 326  Q
    ||||||||||||| | |||||||| | ||   || |||||||| |||||| || ||||| |||| |||||||||||||||||||        | ||| ||    
T  37695760 cttaactactccactaactacaattaataagggtgttttagtaaatgatattaattttaccattgaaatcaacacaattaatcatttccttaataatcgt 37695661  T
Q  327 gcac-aaaccttaaatgactattattttgagacgaaggaagtagt 370  Q
    |||| |||||||||| ||||||||||| |||||| ||| ||||||    
T  37695660 gcacaaaaccttaaacgactattatttagagacggagggagtagt 37695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 44301615 - 44301663
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaa 308  Q
    ||||||||||| ||||||||| |||||||||| ||||||||| ||||||    
T  44301615 gtattttagtaaatgatactaattttatcattgaaatcaacataattaa 44301663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 50345951 - 50345879
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||| |||||| | ||||||||  ||||||||| ||  |||||||||||||| ||| |||||||    
T  50345951 aatgattattttattaaaaagtggtgtggggaccacttaagattggaggtcttaagtgagatcatcggtctta 50345879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 11905879 - 11905926
Alignment:
Q  264 tttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||| ||||||||| ||||||||| ||||| ||||||||||||||    
T  11905879 tttagtaaatgatactaattttatcatcaaaattaacacaattaatca 11905926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 24569194 - 24569111
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||   ||||||||||| || ||| || ||||| |||| |||||||||||||||||||    
T  24569194 cttaactactccactaactacaattaataagggtattttagtaaataatattaattttaccattgaaatcaacacaattaatca 24569111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 43253957 - 43253874
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||   || |||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  43253957 cttaactactccactaactacaattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 43253874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 54726506 - 54726589
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||||| |||||||| | || |  | |||||||| |||||| || ||||| ||| |||||||||||| |||||||    
T  54726506 cttaactactccattaactacaattaataaagatgttttagtaaatgatattaattttaccatcaaaatcaacacatttaatca 54726589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 30711129 - 30711175
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    |||||||| |||||| || |||||||||||||||||||| |||||||    
T  30711129 ttttagtaaatgatattaattttatcattaaaatcaacataattaat 30711175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 37311972 - 37312054
Alignment:
Q  229 ttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||||| | |||||||| | ||   || |||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  37311972 ttaactactccactaactacaattaataagggttttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 37312054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 10366701 - 10366604
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatcannnnnnnna-aatagtgcacaaaccttaaatgactattattttgagacg 359  Q
    ||||| || ||||||||| ||||| |||| |||||||||||||||||||        | ||| |||||||||||||||| |||| |||||| ||||||    
T  10366701 ttttaataaatgatactaattttaccattgaaatcaacacaattaatcattttcttaataatcgtgcacaaaccttaaacgactgttatttagagacg 10366604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 8679113 - 8679065
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  8679113 ttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 8679065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 17652816 - 17652852
Alignment:
Q  275 atactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  17652816 atactagttttaccatcaaaatcaacacaattaatca 17652852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 19823067 - 19823115
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||||||||| || || ||| ||||||||||||||||||||    
T  19823067 ttttagtaaatgatactaattctaccatcaaaatcaacacaattaatca 19823115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 31153461 - 31153571
Alignment:
Q  37 ctaacttttcattatttacattccaacaatacaatgattattttaataaaaaata-gtgtggggttcacttaagaatgagggtcttaagtgagaccatgg 135  Q
    |||||| ||||| |||||||||||| || ||  || |||||||||||||||||   ||||||||  |||| ||  ||| ||||||||||| ||||| |||    
T  31153461 ctaactcttcatcatttacattccaccactaacat-attattttaataaaaaaagtgtgtggggaccactaaaagatg-gggtcttaagttagaccctgg 31153558  T
Q  136 gtcttagaagacc 148  Q
    |||||||||||||    
T  31153559 gtcttagaagacc 31153571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 37497548 - 37497596
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||||||||| ||||| ||| |||||||||||||| |||||    
T  37497548 ttttagtaaatgatactaattttaccatcaaaatcaacacaataaatca 37497596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 53143548 - 53143484
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagacc 131  Q
    ||||| ||||||||| |||||| | ||||||| | |||||||||||||||   ||||||||||||    
T  53143548 acaataattattttattaaaaagttgtgtgggatccacttaagaatgaggtctttaagtgagacc 53143484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 21455163 - 21455251
Alignment:
Q  37 ctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagt 125  Q
    |||||| ||||| |||||||||||||||||||| | |||||||||||||||| ||||| |||||||  |||||||||||||||||||||    
T  21455163 ctaactcttcatcatttacattccaacaatacagtaattattttaataaaaagtagtgcggggttcggttaagaatgagggtcttaagt 21455251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 39401754 - 39401690
Alignment:
Q  18 gtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaa 82  Q
    ||||||||| || ||||| |||| ||||||| |||||||||||||| ||||||||||||||||||    
T  39401754 gtctaaatcgataccaccactaatttttcatcatttacattccaactatacaatgattattttaa 39401690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 39445860 - 39445797
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagacc 131  Q
    ||||||||||||||| |||||| | ||||||||| |||||||||||| |||||||||||||||||    
T  39445860 acaatgattattttattaaaaagttgtgtggggtccacttaagaatg-gggtcttaagtgagacc 39445797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 41221038 - 41220955
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||| |||| |||||||| | || || ||||||| || ||||||||| |||||| ||| |||||||||||||||||||    
T  41221038 cttaactacttcattaactacaattaataaaaatattttaataaatgatactaattttataattgaaatcaacacaattaatca 41220955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 43115894 - 43115811
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||  |||||||||||| ||| |||||  ||||||||| |||||||||||||||||||    
T  43115894 cttaactactccactaactacaataaataagagtattttagtaaatgctactaactttatcattgaaatcaacacaattaatca 43115811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 11512036 - 11512110
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||||| | |||| | ||||||||| ||||||||| || ||||||||||| ||||| |||||||||    
T  11512036 acaatgattattttattgaaaagtggtgtggggtccacttaagattgggggtcttaagttagaccctgggtctta 11512110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 18379853 - 18379780
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||||| |||||| | ||||| | |||||||||||||| ||||||||| | |||||||||||||||    
T  18379853 acaatgattatttta-taaaaagtggtgtgagattcacttaagaatgggggtcttaactaagaccatgggtctta 18379780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 39691542 - 39691594
Alignment:
Q  259 agtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||||| |||||| || |||||||||| |||||||||||||||||||    
T  39691542 agtattttagtaaatgatattaattttatcattgaaatcaacacaattaatca 39691594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 15359179 - 15359096
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||   || |||||||| |||||| || ||||||||| ||||||||||||||||||||    
T  15359179 cttaactactccactaactacaattaataagggtgttttagtaaatgatattaattttatcatcaaaatcaacacaattaatca 15359096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 16805935 - 16805985
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  16805935 tattttagtaaatgatactaattttactattaaaatcaacacaattaatca 16805985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 16845216 - 16845266
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  16845216 tattttagtaaatgatactaattttactattaaaatcaacacaattaatca 16845266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 34120498 - 34120448
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||| || |||||||||||| ||| ||||||||||||||||||||    
T  34120498 tattttagtaaataatactagttttaccatcaaaatcaacacaattaatca 34120448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 43410447 - 43410528
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    ||||||||||||||| |||||||| | ||    |||||||||| |||||| || |||||||||| | |||||||||||||||    
T  43410447 cttaactactccattaactacaattaataaggatattttagtaaatgatattaattttatcattgatatcaacacaattaat 43410528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 16463745 - 16463793
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  16463745 ttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 16463793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 39785606 - 39785692
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgata---ctagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||||| |||||||| | ||  ||| |||||||| ||||||   ||| ||||| ||| ||||||||||||||||||||    
T  39785606 cttaactactccattaactacaattaataagagtgttttagtaaatgatagtactaattttaccatcaaaatcaacacaattaatca 39785692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 5789642 - 5789599
Alignment:
Q  325 gtgcacaaaccttaaatgactattattttgagacgaaggaagta 368  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||    
T  5789642 gtgcacaaaccttaaatgactaatattgtgagacggaggaagta 5789599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 9707352 - 9707462
Alignment:
Q  37 ctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatggg 136  Q
    |||||| ||||| |||||||||||| || ||  ||| |||||||||| |||||  ||||||||  |||| ||  ||| ||||||||||| ||||| |||     
T  9707352 ctaactcttcatcatttacattccaccactaacatg-ttattttaattaaaaagtgtgtggggaccactgaaagatgggggtcttaagttagaccctgga 9707450  T
Q  137 tcttagaagacc 148  Q
    ||||||||||||    
T  9707451 tcttagaagacc 9707462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 19937730 - 19937781
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||| |||||| || ||||| |||| |||||||||||||||||||    
T  19937730 gtattttagtaaatgatattaattttaccattgaaatcaacacaattaatca 19937781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 25637502 - 25637585
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||  | |||||||| | || | || |||||||| |||| |||| ||||| ||| ||||||||||||||||||||    
T  25637502 cttaactactcctataactacaattaataaaggtgttttagtaaatgacactaattttaccatcaaaatcaacacaattaatca 25637585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 36266979 - 36266925
Alignment:
Q  86 aaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctt 140  Q
    |||||||||||||  |||||||||| || ||||| ||||||||||| ||||||||    
T  36266979 aaaatagtgtgggtctcacttaagattgggggtcctaagtgagaccctgggtctt 36266925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 39401511 - 39401441
Alignment:
Q  74 ttattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtcttagaa 144  Q
    ||||||||||||||| | |||||   | ||||||| ||||| ||| |||||||||||| ||||||||||||    
T  39401511 ttattttaataaaaagtggtgtgatatccacttaaaaatgaaggttttaagtgagaccttgggtcttagaa 39401441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 8947109 - 8947061
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||  ||||| |||||||||| |||||||||||||||||||    
T  8947109 ttttagtaaatattactaattttatcattgaaatcaacacaattaatca 8947061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 35242389 - 35242309
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaa 308  Q
    ||||||||||| | | |||||||| | || |  |||| ||||| ||||| ||| ||||| |||||||||||||||||||||    
T  35242389 cttaactactcaactaactacaattaataaatatattctagtaaatgattctaattttaacattaaaatcaacacaattaa 35242309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 36173403 - 36173351
Alignment:
Q  259 agtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||| || |||||| || |||||||| ||||||||||| |||||||||    
T  36173403 agtattttaataaatgatattaattttatcactaaaatcaacaaaattaatca 36173351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 36794340 - 36794388
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| | ||||||| ||||| ||| ||||||||||||||||||||    
T  36794340 ttttagtaaaagatactaattttaccatcaaaatcaacacaattaatca 36794388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 45047161 - 45047239
Alignment:
Q  55 cattccaacaatacaatgattattttaat---aaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagac 130  Q
    |||| ||| ||| ||||||||||||||||   |||||||| |||||||| ||| || |||||| ||| |||||||||||    
T  45047161 catttcaaaaattcaatgattattttaataataaaaaatattgtggggtgcacctacgaatgatggtattaagtgagac 45047239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 3348178 - 3348048
Alignment:
Q  16 atgtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgag 115  Q
    |||| |||||| |||||||  |||||| ||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||  | |||||   |||||     
T  3348178 atgtttaaatcgatcccactgctaactcttcaacatttacattccaacaatacaatgattattttaataaaaagtagcgtggaatccactt---aatgat 3348082  T
Q  116 ggtcttaagtgagaccatgggtcttagaagacca 149  Q
    |||||||||||||||| | | | |||||||||||    
T  3348081 ggtcttaagtgagaccctagattttagaagacca 3348048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 1334144 - 1334224
Alignment:
Q  51 tttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagacc 131  Q
    |||||||||||||||||||  ||||||||||||||||| |||  || | | |||||||||||||  |||||||||||||||    
T  1334144 tttacattccaacaatacaccgattattttaataaaaagtagcttgagatccacttaagaatgaatgtcttaagtgagacc 1334224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 9415522 - 9415641
Alignment:
Q  32 cacctctaacttttcattatttacattccaacaatacaatgatta---ttttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgag 128  Q
    |||| |||||| ||||| ||||||||| |||||||| ||||||||   |||||||||||| || ||||| ||  ||||||||||| || | |||||||||    
T  9415522 caccactaactcttcatcatttacatttcaacaatataatgattattattttaataaaaagtaatgtggtgtgtacttaagaatgtggattttaagtgag 9415621  T
Q  129 accatgggtcttagaagacc 148  Q
    ||  || || ||||||||||    
T  9415622 acactgagttttagaagacc 9415641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 36597127 - 36597192
Alignment:
Q  84 aaaaaatagtgtggggttcacttaagaat-gagggtcttaagtgagaccatgggtcttagaagacc 148  Q
    |||||||  |||||| ||||||||||||| | |||||||||||||||| |||||||||||||||||    
T  36597127 aaaaaatcttgtgggattcacttaagaattgggggtcttaagtgagacaatgggtcttagaagacc 36597192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 7573205 - 7573277
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||| | |||| ||||||||||| ||||||||| || ||||||||||| ||| |||| ||||||    
T  7573205 aatgattattttattgaaaagtagtgtggggtccacttaagattgggggtcttaagtaagatcatgagtctta 7573277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 4428414 - 4428363
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||| |||||| || ||||||||||||||||||||||| ||||||    
T  4428414 gtattttagtaaatgataataattttatcattaaaatcaacacaaataatca 4428363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 7172935 - 7173018
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||| |||| |||||||| | || |  | |||||||| ||| ||||| |||||||||| |||||||||||||||||||    
T  7172935 cttaactacttcattaactacaattaataaatatgttttagtaaatgctactaattttatcattgaaatcaacacaattaatca 7173018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 31271042 - 31271125
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||| ||| | ||  |||||||||||| |||||| || ||||| |||||||||||||||||| |||||    
T  31271042 cttaactactccactaactataattaataagagtattttagtatatgatattaattttaccattaaaatcaacacaatcaatca 31271125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 1421964 - 1422037
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    |||||||||| |||| ||||||||||||| |||| ||||||| |||  ||||||||||||||||| || ||||||    
T  1421964 acaatgattaatttattaaaaaatagtgt-gggtccacttaaaaattggggtcttaagtgagaccctgagtctta 1422037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 5356621 - 5356703
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||| || |||||| |||||||| | || |||||  |||||| |||||| || ||||||||||||||||||||||| ||||||    
T  5356621 cttaattattccattaactacaattaata-aagtacattagtaaatgatattaattttatcattaaaatcaacacaactaatca 5356703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 39405816 - 39405915
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaatcannnnnnnna-aatagtgcacaaaccttaaatgactattattttgagacg 359  Q
    |||| ||||| ||||||||| |||||||||| |||| ||||||||||||||        | ||| |||||||||||||||| ||||| |||| |||||||    
T  39405816 tattatagtaaatgatactaattttatcattgaaattaacacaattaatcatttccttaataatcgtgcacaaaccttaaacgactaatattgtgagacg 39405915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 42887021 - 42887104
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||| ||| | |||||||| | || | ||||||||||| ||||||||| ||||   ||| |||||||||||||||||||    
T  42887021 cttaactacgccactaactacaattaataaaggtattttagtaaatgatactaattttgctattgaaatcaacacaattaatca 42887104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 44104138 - 44104063
Alignment:
Q  73 attattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtcttagaagacc 148  Q
    ||||||||||  |||| || |||||||| |||||||| ||   ||||||||||||||| ||||||| |||||||||    
T  44104138 attattttaaacaaaagtaatgtggggtccacttaagcattgaggtcttaagtgagactatgggtcctagaagacc 44104063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 44761589 - 44761506
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||   || |||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  44761589 cttaactactccactaactacaattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 44761506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 12559647 - 12559697
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||| ||| || || |||||| |||||||||||||||||||||||    
T  12559647 tattttagtaaatggtattaattttattattaaaatcaacacaattaatca 12559697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 7703219 - 7703170
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    ||||||||||| |||||| || ||||| |||| |||||||||||||||||    
T  7703219 gtattttagtaaatgatattaattttaccattgaaatcaacacaattaat 7703170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 311
Target Start/End: Original strand, 9550000 - 9550029
Alignment:
Q  282 ttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||||||||||||||||||||    
T  9550000 ttttatcattaaaatcaacacaattaatca 9550029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 39329086 - 39329123
Alignment:
Q  274 gatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  39329086 gatactaattttatcattaaaattaacacaattaatca 39329123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 1875652 - 1875604
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  1875652 ttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 1875604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 5053213 - 5053165
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| |||||| || ||||| ||| ||||||||||||||||||||    
T  5053213 ttttagtaaatgatattaattttaccatcaaaatcaacacaattaatca 5053165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 27294121 - 27294073
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    |||||||||| | ||||||| |||||||||| |||| ||||||||||||    
T  27294121 tattttagtaaaagatactaattttatcattcaaatgaacacaattaat 27294073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 34057680 - 34057632
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    |||||||||| || ||||||||||||| ||| ||||||||| |||||||    
T  34057680 tattttagtaaataatactagttttattattgaaatcaacataattaat 34057632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 34394014 - 34393966
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| || |||||| ||||| ||| ||||||||||||||||||||    
T  34394014 ttttagtaaattatactaattttaccatcaaaatcaacacaattaatca 34393966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 36967417 - 36967465
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| |||||| || ||||| ||| ||||||||||||||||||||    
T  36967417 ttttagtaaatgatattaattttaccatcaaaatcaacacaattaatca 36967465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 33815985 - 33816082
Alignment:
Q  16 atgtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatg 113  Q
    ||||||||| |  ||||||| |||||| ||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||| |  ||||||||||||    
T  33815985 atgtctaaaccggtcccaccactaactcttcatcatttacatttcaacaatacaacgattattttaataaaaagtagtgtggagcccacttaagaatg 33816082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 9486927 - 9487012
Alignment:
Q  63 caatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtcttagaagacc 148  Q
    ||||||||||||||||||||||| || |  |||| |||  ||||| ||||||||||||||||||||||| | ||||||||||||||    
T  9486927 caatacaatgattattttaataataagttttgtgaggtcaacttacgaatgagggtcttaagtgagaccctcggtcttagaagacc 9487012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 4998971 - 4998921
Alignment:
Q  46 cattatttacattccaacaatacaatgattattttaataaaaaatagtgtg 96  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  4998971 cattatttacattccaacaatacaataattattttaataaaaagtagtgtg 4998921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 263 - 358
Target Start/End: Complemental strand, 759157 - 759061
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatcannnnnnnna-aatagtgcacaaaccttaaatgactattattttgagac 358  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||        | ||| ||||| |||||||||||||||||||||| |||||    
T  759157 ttttagtaaatgatactagttttaccatcaaaatcaacacaattaatcatttccttaataattgtgcataaaccttaaatgactattatttagagac 759061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 33174164 - 33174234
Alignment:
Q  60 caacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagacc 131  Q
    ||||||||||||||||||||||| ||||| || |||||||  |||||||||||||  |||||||||||||||    
T  33174164 caacaatacaatgattattttaagaaaaagtattgtggggcccacttaagaatga-tgtcttaagtgagacc 33174234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 42710603 - 42710664
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgaga 129  Q
    ||||||||||||||| |||||| | |||||||||||||||||||||| | |||||||||||||    
T  42710603 acaatgattattttattaaaaagttgtgtggggttcacttaagaatg-gagtcttaagtgaga 42710664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 37503895 - 37503823
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||| | |||| | ||||||| | ||||||||| || |||||||||||||||||||| ||||||    
T  37503895 aatgattattttattgaaaagtggtgtgggatccacttaagattgggggtcttaagtgagaccatgtgtctta 37503823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 19271834 - 19271751
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | || ||||||||||||  |||  |||| ||| |||||| |||||||||||||||||||    
T  19271834 cttaactactccactaactacaattaataaaagtattttagtcaatgccactaatttgatcattgaaatcaacacaattaatca 19271751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 21760085 - 21760002
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||||| |||||||| | ||   || ||||| || ||||||||| ||||| ||| ||||||||||||||||||||    
T  21760085 cttaactactccattaactacaattagtaagggtgttttattaaatgatactaattttaccatcaaaatcaacacaattaatca 21760002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 41506166 - 41506083
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||  ||| |||||||| ||| ||||| ||||| ||||||||| ||||||||||||||    
T  41506166 cttaactactccactaactacaattaataagagtgttttagtaaatgctactaattttaccattaaaattaacacaattaatca 41506083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 368
Target Start/End: Original strand, 83448 - 83554
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatcannnnnnnna-aatagtgcacaaaccttaaatgactattattttgagacgaa 361  Q
    |||||||| ||||||||| ||||| ||| ||||||||||||||||||||        | ||| ||||| |||||||||| ||||||||||| |||||| |    
T  83448 ttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcatttccttaataattgtgcataaaccttaaacgactattatttagagacgga 83547  T
Q  362 ggaagta 368  Q
    || ||||    
T  83548 gggagta 83554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 368
Target Start/End: Complemental strand, 16560636 - 16560530
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatcannnnnnnna-aatagtgcacaaaccttaaatgactattattttgagacgaa 361  Q
    |||||||| ||||||||||||||| ||| ||||| ||||||||||||||        | ||| ||||| ||| |||||||||||||||||| |||||| |    
T  16560636 ttttagtaaatgatactagttttaccatcaaaataaacacaattaatcatttccttaataatcgtgcataaatcttaaatgactattatttagagacgga 16560537  T
Q  362 ggaagta 368  Q
    || ||||    
T  16560536 gggagta 16560530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 368
Target Start/End: Original strand, 16605026 - 16605132
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatcannnnnnnna-aatagtgcacaaaccttaaatgactattattttgagacgaa 361  Q
    |||||||| ||||||||||||||| ||| ||||| ||||||||||||||        | ||| ||||| ||| |||||||||||||||||| |||||| |    
T  16605026 ttttagtaaatgatactagttttaccatcaaaataaacacaattaatcatttccttaataatcgtgcataaatcttaaatgactattatttagagacgga 16605125  T
Q  362 ggaagta 368  Q
    || ||||    
T  16605126 gggagta 16605132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 17000631 - 17000742
Alignment:
Q  37 ctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagt--gtggggttcacttaagaatgagggtcttaagtgagaccatg 134  Q
    |||||||||||| |||||||||||| || ||  || ||||||||||||||||| |||  |||||| ||||| ||  ||||||||||||||| ||||  ||    
T  17000631 ctaacttttcatcatttacattccaccactaacat-attattttaataaaaaa-agtatgtggggatcactaaaagatgagggtcttaagttagactctg 17000728  T
Q  135 ggtcttagaagacc 148  Q
    | ||||||||||||    
T  17000729 gatcttagaagacc 17000742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 19987143 - 19987103
Alignment:
Q  101 tcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  19987143 tcacttaagattgagggtcttaagtgagaccttgggtctta 19987103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 38391811 - 38391859
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  38391811 ttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 38391859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 3178305 - 3178222
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | || | || |||||||| |||||| || ||||| ||| |||||||||||||| |||||    
T  3178305 cttaactactccactaactacaattaataaaggtgttttagtaaatgatattaattttaccatcaaaatcaacacaatcaatca 3178222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 7463273 - 7463324
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||| |||| ||| ||||| |||||||||| |||||||||||||||||||    
T  7463273 gtatttaagtaaatgctactaattttatcattgaaatcaacacaattaatca 7463324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 21390323 - 21390406
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||||| ||    | |||||||| |||||| |||||||| ||| ||||| ||||||||||||||    
T  21390323 cttaactactccactaactacaatcaataaggatgttttagtaaatgatattagttttaccatcaaaattaacacaattaatca 21390406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 34947528 - 34947611
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||   || |||||||| |||||| || ||||| |||| |||||||||||||||||||    
T  34947528 cttaactactccactaactacaattaataagggtgttttagtaaatgataataattttaccattgaaatcaacacaattaatca 34947611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 34975685 - 34975723
Alignment:
Q  102 cacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  34975685 cacttaagaatgagggtcttaagtgaga-catgggtctta 34975723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 958116 - 958189
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||||| | |||| | ||||| ||| ||||||||| || ||||||||||| ||||| |||||||||    
T  958116 acaatgattattttattgaaaagttgtgtgtggtccacttaagattg-gggtcttaagttagaccctgggtctta 958189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 13962032 - 13962070
Alignment:
Q  273 tgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  13962032 tgatattaattttatcattaaaatcaacacaattaatca 13962070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 22738762 - 22738812
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||| ||||||||| ||||| |||| ||||| |||||||||||||    
T  22738762 tattttagtaaatgatactaattttaccattgaaatctacacaattaatca 22738812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 359
Target Start/End: Original strand, 26974054 - 26974189
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgat---actagttttatcattaaaatcaacacaattaatcannnnnnnna-aat 323  Q
    ||||||||||||| | |||||||| | ||  |||||||||||| |||||   | || ||||| |||| |||||||||||||||||||        | |||    
T  26974054 cttaactactccactaactacaattaataagagtattttagtaaatgatgatattaattttaccattgaaatcaacacaattaatcatttccttaataat 26974153  T
Q  324 agtgcacaaaccttaaatgactattattttgagacg 359  Q
     |||||||||||||||| |||||| |||| ||||||    
T  26974154 cgtgcacaaaccttaaacgactataatttagagacg 26974189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 33202918 - 33202865
Alignment:
Q  95 tggggttcacttaagaatgagggtcttaagtgagaccatgggtcttagaagacc 148  Q
    |||| ||||||||||| |||||||||||||||||||| | ||| ||| ||||||    
T  33202918 tgggtttcacttaagattgagggtcttaagtgagaccttaggtattataagacc 33202865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 311
Target Start/End: Complemental strand, 44433990 - 44433961
Alignment:
Q  282 ttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||||||||||||||||||||    
T  44433990 ttttatcattaaaatcaacacaattaatca 44433961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 358
Target Start/End: Original strand, 16904506 - 16904538
Alignment:
Q  326 tgcacaaaccttaaatgactattattttgagac 358  Q
    ||||||||||||||| |||||||||||||||||    
T  16904506 tgcacaaaccttaaacgactattattttgagac 16904538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 24516355 - 24516307
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  24516355 ttttagtaaatgttactaattttaccattgaaatcaacacaattaatca 24516307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 27828868 - 27828755
Alignment:
Q  29 tcccacctctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgag 128  Q
    ||||||| |||||| || || |||||||||| || ||||||||    ||||||||||||| |||||  || | ||||||| |||| |||| |||||||||    
T  27828868 tcccaccactaactatttatcatttacattcaaataatacaat----attttaataaaaagtagtg--ggatccacttaaaaatgtgggtgttaagtgag 27828775  T
Q  129 accatgggtcttagaagacca 149  Q
    ||| |  ||||||||||||||    
T  27828774 accct-agtcttagaagacca 27828755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 27921051 - 27921099
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||| || ||||||||| ||||| |||||||||||||| |||||||||    
T  27921051 ttttaataaatgatactaattttaccattaaaatcaacataattaatca 27921099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 40076378 - 40076426
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||||||||| ||||| ||| ||||| ||||||||||||||    
T  40076378 ttttagtaaatgatactaattttaccatcaaaattaacacaattaatca 40076426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 42935724 - 42935772
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| |||||| || ||||| ||| ||||||||||||||||||||    
T  42935724 ttttagtaaatgatattaattttaccatcaaaatcaacacaattaatca 42935772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 43873986 - 43874034
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| |||||| || ||||| ||| ||||||||||||||||||||    
T  43873986 ttttagtaaatgatattaattttaccatcaaaatcaacacaattaatca 43874034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 44180268 - 44180316
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| || |||||| ||||| |||| |||||||||||||||||||    
T  44180268 ttttagtaaattatactaattttaccattgaaatcaacacaattaatca 44180316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 44484112 - 44484180
Alignment:
Q  73 attattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||| | |||| | ||||||| | ||||||||| || ||||||||||| ||||| |||||||||    
T  44484112 attattttattgaaaagtggtgtgggatccacttaagactgggggtcttaagttagaccttgggtctta 44484180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 48608937 - 48608973
Alignment:
Q  275 atactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  48608937 atactagttttaccatcaaaatcaacacaattaatca 48608973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 49101691 - 49101777
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtatttta---gtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||  |||||||||   ||| |||||| || ||||||| ||||||| ||||||||||||||    
T  49101691 cttaactactccactaactacaattaatatgagtattttaatagtaaatgatattaattttatccttaaaataaacacaattaatca 49101777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 33099618 - 33099692
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    |||||||||||||||||||||||| |  |||||| |||||||||||||| ||||||||||||| ||| |||||||    
T  33099618 acaatgattattttaataaaaaatggcatggggtccacttaagaatgagtgtcttaagtgagatcattggtctta 33099692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 31632439 - 31632511
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||| |||||||| ||||||| | |||||||||||| |||||||||||| |||| |||||||||    
T  31632439 aatgattattttattaaaaaattgtgtgggatccacttaagaatgggggtcttaagtgtgaccctgggtctta 31632511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 1063696 - 1063613
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | |   |||||||||||| || |||||| |||||||||| |||||||||||||||||||    
T  1063696 cttaactactccactaactacaattactcagagtattttagtaaataatactaattttatcattgaaatcaacacaattaatca 1063613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 24141386 - 24141322
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagacc 131  Q
    ||||||||||||||| |||||| | |||||| |  ||||||||||||| ||||||||||||||||    
T  24141386 acaatgattattttattaaaaagttgtgtggagaccacttaagaatgaaggtcttaagtgagacc 24141322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 29363362 - 29363410
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  29363362 ttttagtaaatgatactagttttaccatcaaaatcaacacaattaatca 29363410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 31632532 - 31632598
Alignment:
Q  166 ccaatgg-ggtacctatttagtaccgagtcataaatgataaagatctcaccattgaggatggtctta 231  Q
    ||||||| |||||||||| ||||| | ||| |||||||| |||| ||||||||||||||||||||||    
T  31632532 ccaatggaggtacctattaagtactgggtcttaaatgatgaagacctcaccattgaggatggtctta 31632598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 27448214 - 27448166
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||||||||| ||| ||||| ||||||||||||||||||||    
T  27448214 ttttagtaaatgatactaatttcatcatcaaaatcaacacaattaatca 27448166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 31766285 - 31766219
Alignment:
Q  18 gtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaata 84  Q
    ||||||||| || ||||| || ||| ||||| ||||||||||| |||||||||||||  ||||||||    
T  31766285 gtctaaatcgattccaccactgactcttcatcatttacattcctacaatacaatgatcgttttaata 31766219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 378929 - 378848
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtcttagaagacc 148  Q
    |||||||| ||||||| ||||| || |||| ||| |||||||| ||   ||| |||||||||||| | ||||||||||||||    
T  378929 acaatgatcattttaagaaaaagtaatgtgtggtccacttaagcattgaggttttaagtgagaccctaggtcttagaagacc 378848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 1955968 - 1955931
Alignment:
Q  331 aaaccttaaatgactattattttgagacgaaggaagta 368  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  1955968 aaaccttaaacgactattattttgagacgaatgaagta 1955931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 7072213 - 7072262
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    |||||| |||| |||| |||| ||||| ||||||||||||||||||||||    
T  7072213 gtatttcagtaaatgacactaattttaccattaaaatcaacacaattaat 7072262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 11703287 - 11703344
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaag 124  Q
    ||||||||||||||| |||||| | ||||||| | ||||||| |||| ||||||||||    
T  11703287 acaatgattattttattaaaaagttgtgtgggatccacttaaaaatgggggtcttaag 11703344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 11656004 - 11655956
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| |||| |||| ||||| ||| ||||||||||||||||||||    
T  11656004 ttttagtaaatgacactaattttaccatcaaaatcaacacaattaatca 11655956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 13087586 - 13087634
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| |||||| || ||||| |||| |||||||||||||||||||    
T  13087586 ttttagtaaatgatattaattttaccattgaaatcaacacaattaatca 13087634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 31894268 - 31894220
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  31894268 ttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 31894220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 32440703 - 32440655
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| || |||||| ||||| ||| ||||||||||||||||||||    
T  32440703 ttttagtaaataatactaattttaccatcaaaatcaacacaattaatca 32440655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 4942534 - 4942612
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtcttagaagac 147  Q
    ||||||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||  ||||| ||| |||||    
T  4942534 aatgattattttattaaaaagttgtgtggggtccacttaagaatgagggtcttaagtgagactctgggtattaaaagac 4942612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 4441043 - 4441123
Alignment:
Q  229 ttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    |||||||||||| | |||||||| | || || |||||||||| || ||| || ||||||||||||||||||||||||||||    
T  4441043 ttaactactccactaactacaattaataaaaatattttagtaaataatattaattttatcattaaaatcaacacaattaat 4441123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 275 - 357
Target Start/End: Original strand, 3076658 - 3076740
Alignment:
Q  275 atactagttttatcattaaaatcaacacaattaatcannnnnnnnaaatagtgcacaaaccttaaatgactattattttgaga 357  Q
    |||||| |||||||||| |||||||||||||||||||        |||| |||||||||| ||| ||||||||||||||||||    
T  3076658 atactaattttatcattgaaatcaacacaattaatcattttgttaaaattgtgcacaaacgttacatgactattattttgaga 3076740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 30471744 - 30471687
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaag 124  Q
    ||||||||||||||| |||||| | ||||||||| ||||||| |||||||||||||||    
T  30471744 acaatgattattttattaaaaagttgtgtggggtccacttaaaaatgagggtcttaag 30471687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 8681471 - 8681526
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaag 124  Q
    ||||||||||||| | |||||| ||||||||| ||||||||| |||||||||||||    
T  8681471 aatgattattttattgaaaaatggtgtggggtccacttaagattgagggtcttaag 8681526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 263 - 365
Target Start/End: Original strand, 9515802 - 9515905
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatcannnnnnnna-aatagtgcacaaaccttaaatgactattattttgagacgaa 361  Q
    |||||||| ||||||||| ||||| |||| |||||||||||||||||||        | ||| |||||||||||||||| ||||| |||| ||||||| |    
T  9515802 ttttagtaaatgatactaattttaccattgaaatcaacacaattaatcattatcttaataatcgtgcacaaaccttaaacgactaatattgtgagacgga 9515901  T
Q  362 ggaa 365  Q
    ||||    
T  9515902 ggaa 9515905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 21060651 - 21060734
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||  |||||||||||| || |||||| ||||| ||| ||||| ||||||||||||||    
T  21060651 cttaactactccactaactacaattaataagagtattttagtaaataatactaattttaccatcaaaataaacacaattaatca 21060734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 27580621 - 27580704
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||   ||||||||||| |||||| || ||||| |||| |||||||||||||||||||    
T  27580621 cttaactactccactaactacaattaataagggtattttagtaaatgatattaattttaccattgaaatcaacacaattaatca 27580704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 309
Target Start/End: Complemental strand, 7828018 - 7827937
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    ||||||||||||| | |||||||| | ||   |||||||| || ||||||||| ||||| |||| |||||||||||||||||    
T  7828018 cttaactactccactaactacaattaataagggtattttaataaatgatactaattttaccattgaaatcaacacaattaat 7827937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 32440194 - 32440303
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaatca-nnnnnnnnaaatagtgcacaaaccttaaatgactattattttgagac 358  Q
    ||||||||||| |||||| || |||||||||| |||| ||||||||||||||         ||||  |||||||||||| || |||||||||||||||||    
T  32440194 gtattttagtaaatgatattaattttatcattgaaattaacacaattaatcatttctttaaaaatcatgcacaaacctttaacgactattattttgagac 32440293  T
Q  359 gaaggaagta 368  Q
    | ||| ||||    
T  32440294 ggagggagta 32440303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 11796259 - 11796179
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaa 308  Q
    |||||||||| || | |||||||| | ||  | |||||||||| || ||| || |||||||||||||||||||||||||||    
T  11796259 cttaactactacactaactacaattaataataatattttagtaaataatattaattttatcattaaaatcaacacaattaa 11796179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 15558591 - 15558527
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagacc 131  Q
    ||||||||||||||| |||||| | ||||||| | || |||| ||||| ||||||||||||||||    
T  15558591 acaatgattattttattaaaaagttgtgtgggatccatttaaaaatgaaggtcttaagtgagacc 15558527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 11761359 - 11761313
Alignment:
Q  259 agtattttagtacatgatactagttttatcattaaaatcaacacaatt 306  Q
    |||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  11761359 agtattttagta-atgatactaattttaccattaaaatcaacacaatt 11761313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 27542816 - 27542899
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||  |||||||||||| ||| || || ||||| |||| ||||||||||||| |||||    
T  27542816 cttaactactccactaactacaattaataagagtattttagtaaatggtattaattttaccattgaaatcaacacaatcaatca 27542899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 36974250 - 36974311
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagac 130  Q
    ||||| |||||||||||||||| | |||| ||| ||||||||||||| ||||||||||||||||    
T  36974250 acaattattattttaataaaaagtggtgt-gggatcacttaagaatg-gggtcttaagtgagac 36974311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 40899939 - 40900022
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||   || |||||||| ||||||||| ||||  ||| ||||||||||||||||||||    
T  40899939 cttaactactccactaactacaattaataagggtgttttagtaaatgatactaattttgccatcaaaatcaacacaattaatca 40900022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 8725100 - 8725018
Alignment:
Q  229 ttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||||| | |||||||| | ||   || |||||||| |||||| || ||||| |||| |||||||||||||||||||    
T  8725100 ttaactactccactaactacaattaataagtgtgttttagtaaatgatattaattttaccattgaaatcaacacaattaatca 8725018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 29374364 - 29374446
Alignment:
Q  229 ttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||||| | |||||||| | || | || |||||||| ||| || || |||||||||| ||||||||| |||||||||    
T  29374364 ttaactactccactaactacaattaataaaggtcttttagtaaatgctattaattttatcattgaaatcaacataattaatca 29374446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 5495746 - 5495823
Alignment:
Q  71 tgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtcttagaagacc 148  Q
    ||||||||||||  |||| || |||||| | |||||||| || | |||||||| ||||||  ||||||||||||||||    
T  5495746 tgattattttaaacaaaagtaatgtgggatccacttaagcattaaggtcttaattgagactctgggtcttagaagacc 5495823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 13906093 - 13906170
Alignment:
Q  71 tgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtcttagaagacc 148  Q
    ||||||||||||  |||| || |||||||| |||||||| ||   |||||||||||||| |||| |||| ||||||||    
T  13906093 tgattattttaagcaaaagtaatgtggggtccacttaagcattgaggtcttaagtgagatcatgagtctcagaagacc 13906170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 15439381 - 15439328
Alignment:
Q  258 aagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| ||||||||| ||||| |||| |||| || |||||||||||    
T  15439381 aagtattttagtaaatgatactaattttaccattgaaattaatacaattaatca 15439328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 13417377 - 13417449
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||| | |||| | ||||||||| ||||||| | || ||||||||||| ||||| || ||||||    
T  13417377 aatgattattttattgaaaagtggtgtggggtccacttaacattgggggtcttaagttagaccctgagtctta 13417449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 40530281 - 40530233
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  40530281 ttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 40530233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 40976406 - 40976334
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||| | |||| | ||||||||| ||||||||| || |||| |||||| ||||  |||||||||    
T  40976406 aatgattattttattgaaaagtggtgtggggtccacttaagattgggggtattaagttagacattgggtctta 40976334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 17694450 - 17694352
Alignment:
Q  18 gtctaaatcaatcccacctctaacttttcattatttacattccaacaatacaatgattattttaataaaaaatagtgtggggttcacttaagaatgagg 116  Q
    |||||||||  || |||| |||||| ||||| ||||||||||||||| |||||||||||||||||| |||| || |||||||| |||| || |||||||    
T  17694450 gtctaaatcggtctcaccactaactcttcatcatttacattccaacactacaatgattattttaatgaaaagtaatgtggggtccactcaaaaatgagg 17694352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 3161819 - 3161931
Alignment:
Q  37 ctaacttttcattatttacattccaacaatacaatgattattttaataaaaaata--gtgtggggttcacttaagaatgagggtcttaagtgagaccatg 134  Q
    |||||||||||| |||||||||||| || ||  || ||||||||||||||||| |  ||||||||  |||| ||  ||| ||||||||||| ||||||||    
T  3161819 ctaacttttcatcatttacattccaccactaacat-attattttaataaaaaaaaatgtgtggggaccactaaaagatgggggtcttaagttagaccatg 3161917  T
Q  135 ggtcttagaagacc 148  Q
     |||||||||||||    
T  3161918 cgtcttagaagacc 3161931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 368
Target Start/End: Complemental strand, 11907699 - 11907558
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatcannnnnnnna-aatagt 326  Q
    ||||||||||||| | |||||||| | ||   || |||||||| ||||||||| ||||| ||| ||||||||||||||||||||        | ||| ||    
T  11907699 cttaactactccaataactacaattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatcatttccttaataatcgt 11907600  T
Q  327 gcacaaaccttaaatgactattattttgagacgaaggaagta 368  Q
    |||  ||||||||||||||||||||| |||||| ||| ||||    
T  11907599 gcattaaccttaaatgactattatttagagacggagggagta 11907558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 309
Target Start/End: Complemental strand, 38502582 - 38502501
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    |||||||||| |||| |||| ||| | || |||||||||| || ||||||||| ||||| ||| ||||||||||||||||||    
T  38502582 cttaactactacattaactataattaataaaagtattttaataaatgatactaattttaccatcaaaatcaacacaattaat 38502501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 26417216 - 26417145
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||| | |||| | ||||||||||||||||||| || |||||||||||||||||  ||||||||    
T  26417216 aatgattattttattgaaaagtggtgtggggttcacttaagattg-gggtcttaagtgagaccccgggtctta 26417145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 32212808 - 32212879
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||| |||||| | ||||| |||  |||||||||||| |||||||||||||||| |||||||||    
T  32212808 aatgattattttattaaaaagtggtgtgaggtctacttaagaatga-ggtcttaagtgagaccctgggtctta 32212879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 36985839 - 36985890
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||| ||||||||| ||||| |||| |||||||||||||||||||    
T  36985839 gtattttagtaaatgatactaattttaccattgaaatcaacacaattaatca 36985890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 41248351 - 41248285
Alignment:
Q  64 aatacaatgattattttaataaaaaatagtgtggggttca-cttaagaatgagggtcttaagtgagac 130  Q
    ||||||||||||||||||||||||  || |||||||  || |||||||||||||||||||||||||||    
T  41248351 aatacaatgattattttaataaaag-tattgtgggggccaacttaagaatgagggtcttaagtgagac 41248285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 42617003 - 42616920
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | || || |||||||||| |||||| || ||||| |||| ||||||||||| |||||||    
T  42617003 cttaactactccacttactacaattaataaaaatattttagtaaatgatattaattttaccattgaaatcaacacagttaatca 42616920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 2653442 - 2653524
Alignment:
Q  229 ttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||| || |||||||| | ||  ||||||||| || ||||||||| |||||  ||| |||||||||||||||||||    
T  2653442 ttaactactcctttaactacaattaataagagtattttaataaatgatactaattttacaattgaaatcaacacaattaatca 2653524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 7987028 - 7987074
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaatta 307  Q
    |||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  7987028 tattttagtagatgatactaattttatcattaaaatcaacactatta 7987074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 16821398 - 16821348
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||| ||||| ||||||||| |||||||||| |||||||||||||||||||    
T  16821398 tattatagtaaatgatactaattttatcattgaaatcaacacaattaatca 16821348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 17114462 - 17114544
Alignment:
Q  229 ttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||||| | |||||||| | ||   || |||||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  17114462 ttaactactccactaactacaattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 17114544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 47359049 - 47358972
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaat 305  Q
    ||||| ||||||| |||||||||| | || ||||||||||| | || || ||| |||||||||| |||||||||||||    
T  47359049 cttaattactccactgactacaattaataaaagtattttagaaaattattctaattttatcattgaaatcaacacaat 47358972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 309
Target Start/End: Complemental strand, 47773119 - 47773038
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    ||||||||||||| | |||||||| | ||   || |||||||| ||||||||| ||||| ||| ||||||||||||||||||    
T  47773119 cttaactactccactaactacaattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaat 47773038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 51997192 - 51997115
Alignment:
Q  71 tgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtcttagaagacc 148  Q
    ||||||||||||  |||| || |||||||  |||||||| ||   |||||||||||||||| ||||||||||||||||    
T  51997192 tgattattttaagcaaaagtaatgtggggcccacttaagcattgaggtcttaagtgagaccttgggtcttagaagacc 51997115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 1586456 - 1586389
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaat-gag--ggtcttaagtgagacc 131  Q
    ||||||||||||||| |||||| | ||||||||| ||||||||||| |||  ||||||||||||||||    
T  1586456 acaatgattattttattaaaaatttgtgtggggtccacttaagaatggaggaggtcttaagtgagacc 1586389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 32470013 - 32469965
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||| || ||||||||| ||||| ||||||||||||||||||||||||    
T  32470013 ttttaataaatgatactaattttaccattaaaatcaacacaattaatca 32469965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 45047237 - 45047300
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagacc 131  Q
    ||||||||||||||| |||||  | ||||||||  ||||||||||||| ||||||||||||||||    
T  45047237 acaatgattattttattaaaatgttgtgtggggcccacttaagaatga-ggtcttaagtgagacc 45047300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 49747014 - 49747122
Alignment:
Q  260 gtattttagtacatgatactagttttatcattaaaatcaacacaattaatcannnnnnnnaaatagtgcacaaaccttaaatgactattattttgagacg 359  Q
    ||||||||||| ||  ||||| |||||||||| ||||||||||||||||| |         ||| |||||||| |||| |||||||| |||| |||||||    
T  49747014 gtattttagtaaatactactaattttatcattgaaatcaacacaattaattattttttaataatcgtgcacaagccttgaatgactaatattgtgagacg 49747113  T
Q  360 aaggaagta 368  Q
    || ||||||    
T  49747114 aatgaagta 49747122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 52859864 - 52859816
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  52859864 ttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 52859816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 34360676 - 34360759
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| | |||||||| | ||  ||| |||||||| ||| ||||| ||||| |||| ||||||| |||||||||||    
T  34360676 cttaactactccactaactacaattaataagagtgttttagtaaatgctactaattttaccattgaaatcaatacaattaatca 34360759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 34483634 - 34483689
Alignment:
Q  69 aatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaag 124  Q
    ||||||||||||| | |||| | ||||||||| ||||||||| |||||||||||||    
T  34483634 aatgattattttattgaaaagtggtgtggggtccacttaagattgagggtcttaag 34483689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 40122954 - 40122871
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||| ||||| | |||||||||| ||   || |||||||| ||| ||||| ||||| ||||||||||||| ||||||||||    
T  40122954 cttaactgctccactaactacaatcaataagggtgttttagtaaatgctactaattttaacattaaaatcaacgcaattaatca 40122871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 47464465 - 47464382
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||||||   |||||||| | ||  ||| |||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  47464465 cttaactactccaccaactacaattaataagagttttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 47464382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 6078026 - 6078099
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtctta 141  Q
    ||||||||||||||| |||||| |  |||| ||| ||||||||||| | | |||||||||||||| |||||||||    
T  6078026 acaatgattattttattaaaaagtgttgtgaggtccacttaagaat-atgatcttaagtgagaccctgggtctta 6078099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 7061731 - 7061681
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||| ||||| ||||||||| ||||| |||| |||||||||||||||||||    
T  7061731 tattatagtaaatgatactaattttaccattgaaatcaacacaattaatca 7061681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 8757389 - 8757328
Alignment:
Q  68 caatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagac 130  Q
    |||||||||||||| |||||| | ||||| | |||| |||||||||| |||||||||||||||    
T  8757389 caatgattattttattaaaaagtggtgtgagattcagttaagaatga-ggtcttaagtgagac 8757328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 49176001 - 49175951
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||| ||||||||| |||||||||| |||||  ||||||||||||    
T  49176001 tattttagtaaatgatactaattttatcattgaaatctccacaattaatca 49175951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 19798940 - 19798977
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaac 300  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  19798940 tttttgtacatgatactagttttaccattaaaatcaac 19798977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 25233202 - 25233283
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaat 309  Q
    |||||||||| || | |||| ||| | ||| ||| |||||||| ||||||||| ||||| ||| ||||| ||||||||||||    
T  25233202 cttaactacttcactaactataattaatactagtgttttagtaaatgatactaattttaccatcaaaattaacacaattaat 25233283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 26147680 - 26147635
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaa 308  Q
    |||||||| ||||||||| ||||| ||| |||||||||||||||||    
T  26147680 ttttagtaaatgatactaattttaccatcaaaatcaacacaattaa 26147635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 40946337 - 40946414
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtcttagaa 144  Q
    ||||| |||||||||| ||||| || |||||||| |||||||| ||   |||||||||||||||| || ||| |||||    
T  40946337 acaattattattttaagaaaaagtaatgtggggtccacttaagcattgaggtcttaagtgagaccctgagtcctagaa 40946414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 51625134 - 51625187
Alignment:
Q  258 aagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||| |||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  51625134 aagtgttttagtaaatgttactaattttaccattgaaatcaacacaattaatca 51625187  T

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Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 2942710 - 2942662
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||| ||||| |||||||||  |||||||||||||||||||    
T  2942710 ttttagtaaatgctactaattttatcatcgaaatcaacacaattaatca 2942662  T

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Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 3689618 - 3689666
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||||||||| ||||| ||| |||||||| |||||||||||    
T  3689618 ttttagtaaatgatactaattttaccatcaaaatcaatacaattaatca 3689666  T

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Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 5841524 - 5841444
Alignment:
Q  231 aactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||||| | |||||||| | ||   ||||||||||| |||||| || ||||| ||||||||||||| |||| |||||    
T  5841524 aactactccactaactacaattaataagggtattttagtaaatgatattaattttaccattaaaatcaacgcaatcaatca 5841444  T

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Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 6609817 - 6609865
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||| ||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  6609817 tttttgtaaatgatactaattttaccatcaaaatcaacacaattaatca 6609865  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 6643725 - 6643677
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||| ||||| ||||| |||| |||||||||||||||||||    
T  6643725 ttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 6643677  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 35380398 - 35380350
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||| ||||| ||||| |||||||||||||| |||||||||    
T  35380398 ttttagtaaatgctactaattttaccattaaaatcaacataattaatca 35380350  T

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Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 37988986 - 37988950
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaa 299  Q
    ||||||||||| | |||||||||||||||||||||||    
T  37988986 ttttagtacattacactagttttatcattaaaatcaa 37988950  T

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Target: scaffold0092 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 4933 - 5015
Alignment:
Q  67 acaatgattattttaat-aaaaaatagtgtggggttcacttaagaatgagggtcttaagtgagaccatgggtcttagaagacc 148  Q
    ||||||||||||||| | ||||||| |||| |||  ||||||||||||||| |||||||||||||| |||||||||| |||||    
T  4933 acaatgattattttatttaaaaaatggtgttggggccacttaagaatgaggatcttaagtgagaccctgggtcttaggagacc 5015  T

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Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 1725 - 1808
Alignment:
Q  228 cttaactactccattgactacaatcattacaagtattttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||||||| |||||||||| | |||  || ||| |||| ||||||||| ||||| ||| |||||||||| |||||||||    
T  1725 cttaactactccactgactacaattaatacgggtgtttaagtaaatgatactaattttaccatcaaaatcaacataattaatca 1808  T

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Target: scaffold0040 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 55915 - 55961
Alignment:
Q  102 cacttaagaatgagggtcttaagtgagaccatgggtcttagaagacc 148  Q
    |||||||||||||||||||||||||||||| |||||| || ||||||    
T  55915 cacttaagaatgagggtcttaagtgagaccctgggtcctataagacc 55961  T

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Target: scaffold0067 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 269 - 212
Alignment:
Q  67 acaatgattattttaataaaaaatagtgtggggttcacttaagaatgagggtcttaag 124  Q
    ||||||||||||||| |||||| | ||||||||| |||||||||||  ||||||||||    
T  269 acaatgattattttattaaaaagttgtgtggggtccacttaagaatatgggtcttaag 212  T

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Target: scaffold0302 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 16154 - 16202
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||| || || ||||||||||||||||||||||||||||||    
T  16154 ttttagtaaatgctattaattttatcattaaaatcaacacaattaatca 16202  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 39144 - 39192
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| ||||||||| ||| ||||| ||||||||||||||||||||    
T  39144 ttttagtaaatgatactaatttcatcatcaaaatcaacacaattaatca 39192  T

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Target: scaffold0464 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 6335 - 6296
Alignment:
Q  272 atgatactagttttatcattaaaatcaacacaattaatca 311  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  6335 atgatactaattttatcattagaatcaacacaattaatca 6296  T

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Target: scaffold0159 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 34015 - 33972
Alignment:
Q  325 gtgcacaaaccttaaatgactattattttgagacgaaggaagta 368  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||    
T  34015 gtgcacaaaccttaaatgactaatattgtgagacggaggaagta 33972  T

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Target: scaffold0095 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 50258 - 50357
Alignment:
Q  261 tattttagtacatgatactagttttatcattaaaatcaacacaattaatcannnnnnnna-aatagtgcacaaaccttaaatgactattattttgagacg 359  Q
    |||| ||||| ||||||||| |||||||||| |||| ||||||||||||||        | ||| |||||||||||||||| ||||| |||| |||||||    
T  50258 tattatagtaaatgatactaattttatcattgaaattaacacaattaatcatttccttaataatcgtgcacaaaccttaaacgactaatattgtgagacg 50357  T

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Target: scaffold0583 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 2081 - 2129
Alignment:
Q  263 ttttagtacatgatactagttttatcattaaaatcaacacaattaatca 311  Q
    |||||||| |||||| || |||||||||| |||| ||||||||||||||    
T  2081 ttttagtaaatgatattaattttatcattgaaattaacacaattaatca 2129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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