View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0584_high_6 (Length: 423)
Name: NF0584_high_6
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0584_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 29 - 413
Target Start/End: Original strand, 33860307 - 33860691
Alignment:
| Q |
29 |
acctataacatggttataaacaaaaatacatactataacatgtttagctttagtctttagtatataagattttcatctctcaattgaatttattatcact |
128 |
Q |
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| T |
33860307 |
acctataacatggttataaacaaaaatacatactataacatgtttagctttagtctttagtatataagattttcatctctcaattgaatttattatcact |
33860406 |
T |
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| Q |
129 |
tggtccaaatgaatgatgaaaattggaaatatgcaggtatgcaacagattatggcatgtttcgtttctgtatagctgacagtgagcatgattggagagaa |
228 |
Q |
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| T |
33860407 |
tggtccaaatgaatgatgaaaattggaaatatgcaggtatgcaacagattatggcatgtttcgtttctgtatagctgacagtgagcatgattggagagaa |
33860506 |
T |
|
| Q |
229 |
ggatcggaacaatacaaattcatagagcattgccttgcaacagtagatagaaaacaacaaccatggttaatctttgcagcacatcgtccactcggttact |
328 |
Q |
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| T |
33860507 |
ggatcggaacaatacaaattcatcgagcattgccttgcaacagtagatagaaaacaacaaccatggttaatctttgcagcacatcgtccactcggttact |
33860606 |
T |
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| Q |
329 |
cctctaatgattggtatgccaaggagggttcatttcaagaacccatgggaagggagagtttgcagggactttggcagaagtataa |
413 |
Q |
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| T |
33860607 |
cctctaatgattggtatgccaaggagggttcatttcaagaacccatgggaagggagagtttgcagggactttggcagaagtataa |
33860691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 132 - 413
Target Start/End: Original strand, 33875288 - 33875569
Alignment:
| Q |
132 |
tccaaatgaatgatgaaaattggaaatatgcaggtatgcaacagattatggcatgtttcgtttctgtatagctgacagtgagcatgattggagagaagga |
231 |
Q |
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| T |
33875288 |
tccaaatgaatgatgaaaattggaaatatgcaggtatgcaacagattatggcatgtttcatttctgtatagcagacagtgagcatgactggagagaagga |
33875387 |
T |
|
| Q |
232 |
tcggaacaatacaaattcatagagcattgccttgcaacagtagatagaaaacaacaaccatggttaatctttgcagcacatcgtccactcggttactcct |
331 |
Q |
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|||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||| |
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| T |
33875388 |
tcggaacagtacaaattcatcgagcattaccttgcaactgtagatagaaaacaacaaccatggttaatatttgcagcacatcgcccacttgcttactcct |
33875487 |
T |
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| Q |
332 |
ctaatgattggtatgccaaggagggttcatttcaagaacccatgggaagggagagtttgcagggactttggcagaagtataa |
413 |
Q |
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| T |
33875488 |
ctaatgattggtatgccgaggagggttcatttgaagagcccatgggaagggaaagtttgcagaggctttggcagaagtataa |
33875569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 136 - 413
Target Start/End: Original strand, 33870701 - 33870978
Alignment:
| Q |
136 |
aatgaatgatgaaaattggaaatatgcaggtatgcaacagattatggcatgtttcgtttctgtatagctgacagtgagcatgattggagagaaggatcgg |
235 |
Q |
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| T |
33870701 |
aatgaacgacgaaaattggaaatatgcaggtatgccacagattatggcatgtttcgtttctgtatagcagacactgaacatgactggagagaaggatcgg |
33870800 |
T |
|
| Q |
236 |
aacaatacaaattcatagagcattgccttgcaacagtagatagaaaacaacaaccatggttaatctttgcagcacatcgtccactcggttactcctctaa |
335 |
Q |
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| T |
33870801 |
aacaatacaaattcatcgagcattgccttgcaacagtagatagaaaacaacaaccatggttaatctttgcagcacatcgcccacttggttactcctctaa |
33870900 |
T |
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| Q |
336 |
tgattggtatgccaaggagggttcatttcaagaacccatgggaagggagagtttgcagggactttggcagaagtataa |
413 |
Q |
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| T |
33870901 |
tgattgatacgccaaagagggttcatttgaagatcccatgggaagggaaagtttgcaggggctttggcaaaagtataa |
33870978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 162 - 407
Target Start/End: Original strand, 42784256 - 42784501
Alignment:
| Q |
162 |
caggtatgcaacagattatggcatgtttcgtttctgtatagctgacagtgagcatgattggagagaaggatcggaacaatacaaattcatagagcattgc |
261 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||| |||||||||| ||| ||||||||| |||||||||| ||||| ||||||||||| |||||||| |
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| T |
42784256 |
caggtatgcaacggattatggcatgtttcgcttctgcatagctgacactgaacatgattggcgagaaggatctgaacagtacaaattcatcgagcattgt |
42784355 |
T |
|
| Q |
262 |
cttgcaacagtagatagaaaacaacaaccatggttaatctttgcagcacatcgtccactcggttactcctctaatgattggtatgccaaggagggttcat |
361 |
Q |
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||||||||||| || ||| || ||||||| ||||| |||||||| || |||||| || || || |||||| | |||||||| | ||| || |||| |
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| T |
42784356 |
cttgcaacagtggacagacaaaaacaaccctggttgatctttgctgcgcatcgtgtgcttggatattcctctgacttttggtatggaatggaagggtcat |
42784455 |
T |
|
| Q |
362 |
ttcaagaacccatgggaagggagagtttgcagggactttggcagaa |
407 |
Q |
| |
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|| ||| || ||||||||||| ||||||||| ||||||||||||| |
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| T |
42784456 |
ttgcagagccaatgggaagggaaagtttgcagagactttggcagaa |
42784501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 20003693 - 20003611
Alignment:
| Q |
178 |
tatggcatgtttcgtttctgtatagctgacagtgagcatgattggagagaaggatcggaacaatacaaattcatagagcattg |
260 |
Q |
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||||||||||| ||||||||| | || |||| ||| |||||||||||||||||| | ||||||||||| ||||| |||||||| |
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| T |
20003693 |
tatggcatgttccgtttctgtgtcgcagacactgaacatgattggagagaaggaacagaacaatacaagttcattgagcattg |
20003611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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