View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0584_low_11 (Length: 424)

Name: NF0584_low_11
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0584_low_11
NF0584_low_11
[»] chr1 (7 HSPs)
chr1 (97-382)||(17577483-17577768)
chr1 (122-232)||(3887555-3887665)
chr1 (122-173)||(11941299-11941350)
chr1 (122-229)||(2295133-2295240)
chr1 (137-232)||(27146178-27146273)
chr1 (122-176)||(4481967-4482020)
chr1 (122-176)||(47498818-47498872)
[»] chr5 (8 HSPs)
chr5 (122-224)||(10639990-10640092)
chr5 (122-173)||(7808542-7808593)
chr5 (122-172)||(39105501-39105551)
chr5 (159-232)||(9107164-9107237)
chr5 (122-232)||(16937806-16937916)
chr5 (122-176)||(42582375-42582428)
chr5 (139-232)||(41419373-41419466)
chr5 (192-232)||(35299872-35299912)
[»] chr3 (7 HSPs)
chr3 (122-202)||(21367704-21367784)
chr3 (122-176)||(53952085-53952138)
chr3 (139-232)||(31365111-31365204)
chr3 (141-226)||(34610735-34610820)
chr3 (122-176)||(402521-402575)
chr3 (190-232)||(16072964-16073006)
chr3 (126-175)||(39723381-39723429)
[»] chr4 (8 HSPs)
chr4 (122-232)||(17822788-17822898)
chr4 (122-232)||(13126499-13126609)
chr4 (125-176)||(49939930-49939981)
chr4 (122-205)||(54069367-54069450)
chr4 (190-232)||(27043753-27043795)
chr4 (122-232)||(52315120-52315230)
chr4 (123-228)||(25904150-25904255)
chr4 (159-232)||(49940090-49940163)
[»] chr7 (7 HSPs)
chr7 (98-231)||(48470058-48470190)
chr7 (142-229)||(19302489-19302576)
chr7 (138-176)||(17248605-17248643)
chr7 (122-176)||(20526483-20526537)
chr7 (122-176)||(39967957-39968011)
chr7 (126-175)||(43219785-43219833)
chr7 (139-223)||(33601342-33601426)
[»] chr8 (9 HSPs)
chr8 (122-214)||(1930072-1930164)
chr8 (161-232)||(43717857-43717928)
chr8 (122-169)||(1113095-1113142)
chr8 (137-176)||(7514630-7514669)
chr8 (122-229)||(32840912-32841019)
chr8 (122-232)||(30251377-30251487)
chr8 (122-176)||(33808340-33808394)
chr8 (190-232)||(38602432-38602474)
chr8 (139-203)||(28763422-28763486)
[»] chr6 (5 HSPs)
chr6 (122-173)||(28641732-28641782)
chr6 (122-176)||(9912170-9912224)
chr6 (126-175)||(696483-696531)
chr6 (137-218)||(9559359-9559440)
chr6 (164-232)||(21405077-21405145)
[»] chr2 (8 HSPs)
chr2 (122-176)||(43570451-43570504)
chr2 (119-216)||(18066162-18066259)
chr2 (124-176)||(750709-750761)
chr2 (122-232)||(4606962-4607072)
chr2 (190-232)||(15305779-15305821)
chr2 (122-176)||(16451155-16451209)
chr2 (122-175)||(36534805-36534858)
chr2 (164-232)||(30331830-30331898)
[»] scaffold0608 (1 HSPs)
scaffold0608 (122-176)||(9617-9670)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 97 - 382
Target Start/End: Complemental strand, 17577768 - 17577483
Alignment:
Q  97 aataagctatctttgaataatgtaagaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17577768 aataagctatctttgaataatgtaagaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaa 17577669  T
Q  197 cttatgtcaataggtaagctcagataagtcaatccagtaaaacctcaattcaaagttcattgaataaaattctattttttctgatattttcgtgagtttc 296  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  17577668 cttatgtcaataggtaagctcagataagtcaatctagtaaaacctcaattcaaagttccttgaataaaattctaatttttctgatattttcgtgagtttc 17577569  T
Q  297 ctatgatatttctannnnnnncttcataaatatatgacatttccatttatgatgcttgaatattcacgagcactagcatcgagcta 382  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17577568 ctatgatatttctatttttttcttcataaatatatgacatttccatttatgatgcttgaatattcacgagcattagcatcgagcta 17577483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 3887665 - 3887555
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagat 221  Q
    ||||||||| |||| |||||||||||||||||| || || |||||||||||||||  ||||| |     |||||||||||  ||||||  ||||||| ||    
T  3887665 gaaaataagttaaaaacagcttatgaacaatgtcataagatgttttcataagttcttccaaacagccttacaaaacttataccaatagtaaagctcaaat 3887566  T
Q  222 aagtcaatcca 232  Q
    |||||||||||    
T  3887565 aagtcaatcca 3887555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 11941299 - 11941350
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataag 173  Q
    ||||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  11941299 gaaaataagctgaaaacagcttatgaacaatgttataagctattttcataag 11941350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 2295133 - 2295240
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagat 221  Q
    ||||||||| | || | |||||||||| | ||| || ||||||||||||||||||  ||||| | |  ||||||||||||| || ||| |||||||| ||    
T  2295133 gaaaataagttgaatagagcttatgaaaattgtcataagctgttttcataagttctcccaaacagtctcacaaaacttatgccagtagataagctcaaat 2295232  T
Q  222 aagtcaat 229  Q
    ||| ||||    
T  2295233 aagccaat 2295240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 27146273 - 27146178
Alignment:
Q  137 acagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    |||||||||||||||||| || || ||||| | |||||||  ||||  | |  ||||||||||||| |||||| |||||||| || ||||||||||    
T  27146273 acagcttatgaacaatgtcataagttgtttccttaagttcttccaacaagtctcacaaaacttatgccaatagataagctcaaatcagtcaatcca 27146178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 4481967 - 4482020
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    |||||||||||||| ||||||||||||| |||| || || |||||||||||||||    
T  4481967 gaaaataagctaaaaacagcttatgaac-atgtaataagttgttttcataagttc 4482020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 47498872 - 47498818
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    |||||||||||||| ||| |||||||||||| | || |||| |||||||||||||    
T  47498872 gaaaataagctaaaaacaacttatgaacaatatcataagctattttcataagttc 47498818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 10639990 - 10640092
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagat 221  Q
    |||||||||||| | | |||||||||| ||||| || ||||||||||||||||||  ||||| | || |||||||||||||||| ||| ||| |||| ||    
T  10639990 gaaaataagctagaaaaagcttatgaaaaatgtcataagctgttttcataagttctcccaaacaatatcacaaaacttatgtcagtagataaactcaaat 10640089  T
Q  222 aag 224  Q
    |||    
T  10640090 aag 10640092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 7808542 - 7808593
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataag 173  Q
    ||||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  7808542 gaaaataagctgaaaacagcttatgaacaatgttataagctattttcataag 7808593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 39105501 - 39105551
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataa 172  Q
    |||||||||||||| | |||||||||||||||| || ||||||||||||||    
T  39105501 gaaaataagctaaaaatagcttatgaacaatgtcataagctgttttcataa 39105551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 9107164 - 9107237
Alignment:
Q  159 agctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    |||||||||||| |||||  ||||| |||  |||||||||||||||| ||| ||| |||| |||||||||||||    
T  9107164 agctgttttcatgagttctcccaaacattctcacaaaacttatgtcactagataaactcaaataagtcaatcca 9107237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 16937916 - 16937806
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagat 221  Q
    ||||||||||| || | ||||||||||   ||| || ||||||||||||||||||  ||||| | |  |||||||||||||  | ||| |||||||| ||    
T  16937916 gaaaataagctgaaaaaagcttatgaaatttgtcataagctgttttcataagttcttccaaacactctcacaaaacttatgctagtagataagctcaaat 16937817  T
Q  222 aagtcaatcca 232  Q
    ||| |||||||    
T  16937816 aagccaatcca 16937806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 42582428 - 42582375
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    |||| ||||||||| |||| |||||||||||||||| ||||||| ||||||||||    
T  42582428 gaaactaagctaaa-acagtttatgaacaatgttataagctgttctcataagttc 42582375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 41419373 - 41419466
Alignment:
Q  139 agcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    |||| ||||||||||| || ||||||||||| |||||   ||||| | |  ||||||| |||||||| ||| | |||||| |||||||||||||    
T  41419373 agctcatgaacaatgtcataagctgttttcacaagttatcccaaacaatctcacaaaatttatgtcagtagattagctcaaataagtcaatcca 41419466  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 35299872 - 35299912
Alignment:
Q  192 caaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    ||||||| |||||||||| |||||||| |||||||||||||    
T  35299872 caaaactcatgtcaatagataagctcaaataagtcaatcca 35299912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 21367704 - 21367784
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatg 202  Q
    ||||||||||| || ||||||| |||||||||| || ||||||||||||||||||  ||||| | | ||||||||||||||    
T  21367704 gaaaataagctgaaaacagcttgtgaacaatgtcataagctgttttcataagttctcccaaacagtcccacaaaacttatg 21367784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 53952085 - 53952138
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    ||||||||||| || |||||| ||||||| |||||||||||||||||||||||||    
T  53952085 gaaaataagctgaaaacagctcatgaaca-tgttatcagctgttttcataagttc 53952138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 31365204 - 31365111
Alignment:
Q  139 agcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    |||||||||| | ||| || ||||| ||||||||||||  ||||| | |  ||||||||||||| |||||| |||||||| ||||| |||||||    
T  31365204 agcttatgaaaattgtcataagctgctttcataagttctcccaaacagtctcacaaaacttatgccaatagataagctcaaataagccaatcca 31365111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 34610820 - 34610735
Alignment:
Q  141 cttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagataagtc 226  Q
    |||||||||||||| || ||| ||||||||||||||  ||||| | |   ||||||||||||||| ||| |||||||| |||||||    
T  34610820 cttatgaacaatgtcataagcagttttcataagttctcccaaatagttgtacaaaacttatgtcagtagataagctcaaataagtc 34610735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 402575 - 402521
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    |||| |||||| || |||||||||||||||||| || ||||||||||||| ||||    
T  402575 gaaattaagctgaaaacagcttatgaacaatgtcataagctgttttcatacgttc 402521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 16073006 - 16072964
Alignment:
Q  190 cacaaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    |||||||||||||||| ||| |||||||| |||||||||||||    
T  16073006 cacaaaacttatgtcattagataagctcaaataagtcaatcca 16072964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 39723429 - 39723381
Alignment:
Q  126 ataagctaaagacagcttatgaacaatgttatcagctgttttcataagtt 175  Q
    |||||||||| ||||||||||||| |||| || |||||||||||||||||    
T  39723429 ataagctaaaaacagcttatgaac-atgtcataagctgttttcataagtt 39723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 17822898 - 17822788
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagat 221  Q
    |||||||||||||| | |||||||||| ||||| || ||||||||||||| ||||  | ||| | |  |||| ||||||||||| ||| |||||||| ||    
T  17822898 gaaaataagctaaaaaaagcttatgaaaaatgtcataagctgttttcatatgttctcctaaatagtctcacagaacttatgtcagtagataagctcaaat 17822799  T
Q  222 aagtcaatcca 232  Q
    |||| ||||||    
T  17822798 aagttaatcca 17822788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 13126609 - 13126499
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagat 221  Q
    ||||||||||| || | |||||||||  ||||| || ||||||||| ||||||||  ||||| | |  |||||||||||||| | |||||||||| | ||    
T  13126609 gaaaataagctgaaaaaagcttatgataaatgtcataagctgtttttataagttcttccaaacagtctcacaaaacttatgttagtaggtaagctaaaat 13126510  T
Q  222 aagtcaatcca 232  Q
    ||| |||||||    
T  13126509 aagccaatcca 13126499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 49939981 - 49939930
Alignment:
Q  125 aataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    |||||||| || |||||||||||||||||| || |||| |||||||||||||    
T  49939981 aataagctgaaaacagcttatgaacaatgtcataagctcttttcataagttc 49939930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 54069450 - 54069367
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtca 205  Q
    ||||||||| |||| |||||||||||| | |||| | ||||||||||| || | | |||||| | | |||||||||||||||||    
T  54069450 gaaaataagttaaaaacagcttatgaaaattgttgtaagctgttttcaaaaatcctaccaaacagtcccacaaaacttatgtca 54069367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 27043795 - 27043753
Alignment:
Q  190 cacaaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    |||||||||||||||| ||| |||||||| |||||||||||||    
T  27043795 cacaaaacttatgtcagtagataagctcaaataagtcaatcca 27043753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 52315230 - 52315120
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagat 221  Q
    ||||||||||| ||  || |||||||| ||||| || || |||||| ||||||||  ||||| | |  ||||||||||| |||| ||| ||| |||| ||    
T  52315230 gaaaataagctgaaagcaacttatgaataatgtgataagttgttttgataagttcttccaaacaatctcacaaaacttacgtcagtagataaactcaaat 52315131  T
Q  222 aagtcaatcca 232  Q
    |||||||||||    
T  52315130 aagtcaatcca 52315120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 25904255 - 25904150
Alignment:
Q  123 aaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagata 222  Q
    |||||||||| || | |||||||||| ||||  || ||||||||||||||| ||  ||||| | |  ||||||| |||||||| | | |||||||| |||    
T  25904255 aaaataagctgaaaaaagcttatgaaaaatggcataagctgttttcataagctctcccaaacagtctcacaaaatttatgtcattggataagctcaaata 25904156  T
Q  223 agtcaa 228  Q
    ||||||    
T  25904155 agtcaa 25904150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 49940163 - 49940090
Alignment:
Q  159 agctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    ||||||||||||||||||   |||| | |  |||||||||||||| |  ||||||||||| |||||||||||||    
T  49940163 agctgttttcataagttctctcaaacagtctcacaaaacttatgttagcaggtaagctcaaataagtcaatcca 49940090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 48470058 - 48470190
Alignment:
Q  98 ataagctatctttgaataatgtaagaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaac 197  Q
    ||||||||| |||||||||  || ||| ||||||| || | |||||||||| ||||  || ||||||||||||||||||  ||||| | |  || |||||    
T  48470058 ataagctat-tttgaataacttatgaacataagctcaaaaaagcttatgaaaaatgccataagctgttttcataagttctcccaaacaatctcataaaac 48470156  T
Q  198 ttatgtcaataggtaagctcagataagtcaatcc 231  Q
    ||||||| |||| |||||||| ||||| ||||||    
T  48470157 ttatgtctatagataagctcaaataagccaatcc 48470190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 19302576 - 19302489
Alignment:
Q  142 ttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagataagtcaat 229  Q
    ||||||| | ||| || |||||||||||||| |||  ||||| |||  |||||||||||||||| ||| |||||||| ||||||||||    
T  19302576 ttatgaaaattgtcataagctgttttcataaattctcccaaatattctcacaaaacttatgtcagtagataagctcaaataagtcaat 19302489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 17248605 - 17248643
Alignment:
Q  138 cagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  17248605 cagcttatgaacaatgttataagctgtttttataagttc 17248643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 20526483 - 20526537
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    |||||||||||||| |||||||| ||| ||||| || | ||||||||||||||||    
T  20526483 gaaaataagctaaaaacagcttacgaaaaatgtgataaactgttttcataagttc 20526537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 39967957 - 39968011
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    ||||||||| | || |||||||||||||||||  || ||||||||||||||||||    
T  39967957 gaaaataagttgaaaacagcttatgaacaatgccataagctgttttcataagttc 39968011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 43219833 - 43219785
Alignment:
Q  126 ataagctaaagacagcttatgaacaatgttatcagctgttttcataagtt 175  Q
    |||||||||| ||||||||||||| |||| || |||||||||||||||||    
T  43219833 ataagctaaaaacagcttatgaac-atgtcataagctgttttcataagtt 43219785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 33601426 - 33601342
Alignment:
Q  139 agcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagataa 223  Q
    |||||||||| | ||| || ||||||||||||||||||    ||||| |  ||||||||||||| |||||| |||||||| ||||    
T  33601426 agcttatgaaaagtgtcataagctgttttcataagttctcgaaaagagtctcacaaaacttatgccaatagataagctcaaataa 33601342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 1930072 - 1930164
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaag 214  Q
    ||||||||||| || |||||||||||||||||| || | ||||||||| ||||||  ||||| | |  |||||||||||||||| ||| ||||    
T  1930072 gaaaataagctgaaaacagcttatgaacaatgtcataaactgttttcacaagttctcccaaataatgtcacaaaacttatgtcagtagataag 1930164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 43717928 - 43717857
Alignment:
Q  161 ctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    ||||||||||||||||  ||||| | |  |||||||||||||||||||| |||||||| ||||| |||||||    
T  43717928 ctgttttcataagttctcccaaatagtctcacaaaacttatgtcaatagataagctcaaataagccaatcca 43717857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 1113095 - 1113142
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttca 169  Q
    |||||| ||||||| ||||||||||||||||||| | |||||||||||    
T  1113095 gaaaattagctaaaaacagcttatgaacaatgttttaagctgttttca 1113142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 7514630 - 7514669
Alignment:
Q  137 acagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  7514630 acagcttatgaacaatgttatcagctgctttcacaagttc 7514669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 32841019 - 32840912
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagat 221  Q
    ||||||||||| || ||| |||||||||||||| || || |||||||||||||||  ||||| | |  | |||||||| ||| | ||| ||||||||  |    
T  32841019 gaaaataagctgaaaacaacttatgaacaatgtcataagttgttttcataagttctcccaaacagtctcgcaaaacttgtgtgagtagataagctcaagt 32840920  T
Q  222 aagtcaat 229  Q
    ||||||||    
T  32840919 aagtcaat 32840912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 30251487 - 30251377
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagat 221  Q
    |||||||||||  | | |||||||||| ||||  || |||||||||| |||||||  ||||| | |  ||| |||||||||||| ||| |||||||| ||    
T  30251487 gaaaataagctgtaaaaagcttatgaaaaatgcaataagctgttttcgtaagttctcccaaacagtctcacgaaacttatgtcagtagataagctcaaat 30251388  T
Q  222 aagtcaatcca 232  Q
    ||| |||||||    
T  30251387 aagccaatcca 30251377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 33808340 - 33808394
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    |||||||||||||| ||| |||||||||||| | || |||| |||||||||||||    
T  33808340 gaaaataagctaaaaacaacttatgaacaatatcataagctattttcataagttc 33808394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 38602432 - 38602474
Alignment:
Q  190 cacaaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    |||||||||||||||| ||| |||||||| |||||||||||||    
T  38602432 cacaaaacttatgtcagtagataagctcaaataagtcaatcca 38602474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 28763422 - 28763486
Alignment:
Q  139 agcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgt 203  Q
    |||||||||| | |||||| ||||||||||||||||||  ||||| | |  ||||||||||||||    
T  28763422 agcttatgaaaattgttataagctgttttcataagttctcccaaacagtctcacaaaacttatgt 28763486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 28641782 - 28641732
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataag 173  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||||||||||    
T  28641782 gaaaataagctaaaaacagcttatgaac-atgttataagctgttttcataag 28641732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 9912224 - 9912170
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    ||||||||||| || |||||||||||||||||| || ||||| ||||||||||||    
T  9912224 gaaaataagctcaaaacagcttatgaacaatgtcataagctggtttcataagttc 9912170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 696483 - 696531
Alignment:
Q  126 ataagctaaagacagcttatgaacaatgttatcagctgttttcataagtt 175  Q
    |||||||||| ||||||||||||| |||| || |||||||||||||||||    
T  696483 ataagctaaaaacagcttatgaac-atgtcataagctgttttcataagtt 696531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 9559440 - 9559359
Alignment:
Q  137 acagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctca 218  Q
    ||||||||||||||||||| | |||||||||||||| |||  | ||| | |  ||||||||||||| |||||| ||| ||||    
T  9559440 acagcttatgaacaatgttgtaagctgttttcataacttctcctaaacagtctcacaaaacttatgccaatagataatctca 9559359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 21405145 - 21405077
Alignment:
Q  164 ttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    ||||||| |||||  ||||| |||  |||||||||||||||| ||  |||||||| |||||||||||||    
T  21405145 ttttcattagttcccccaaatattctcacaaaacttatgtcagtatataagctcaaataagtcaatcca 21405077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 43570451 - 43570504
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    |||||||||||||| | |||||||||||||||| || ||||||||||||||||||    
T  43570451 gaaaataagctaaaaa-agcttatgaacaatgtcataagctgttttcataagttc 43570504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 18066162 - 18066259
Alignment:
Q  119 taagaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagct 216  Q
    |||||||||||| | || | ||||||||| |||||| || |||||||||||||||||  || ||| | |  |||||||||||||||| ||| ||||||    
T  18066162 taagaaaataaggtgaaaatagcttatgagcaatgtcataagctgttttcataagttgtacaaaacagtttcacaaaacttatgtcagtagataagct 18066259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 750709 - 750761
Alignment:
Q  124 aaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    ||||||||| || |||||||||||||||||| || |||| |||||||||||||    
T  750709 aaataagctcaaaacagcttatgaacaatgtcattagctcttttcataagttc 750761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 4606962 - 4607072
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagat 221  Q
    ||||||||||||||  ||||| ||||||||||| || || |||||||| ||||||  ||||| | |  |||||||||||| |   ||| |||||||| ||    
T  4606962 gaaaataagctaaaagcagctcatgaacaatgtcataagttgttttcacaagttctcccaaatagtctcacaaaacttatattggtagataagctcaaat 4607061  T
Q  222 aagtcaatcca 232  Q
    ||| |||||||    
T  4607062 aagccaatcca 4607072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 15305779 - 15305821
Alignment:
Q  190 cacaaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    |||||||||||||||||||| |||||||| ||||| |||||||    
T  15305779 cacaaaacttatgtcaatagataagctcaaataagccaatcca 15305821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 16451155 - 16451209
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    ||||||||||| || |||||| ||||||||||| || || |||||||||||||||    
T  16451155 gaaaataagctgaaaacagctcatgaacaatgtcataagttgttttcataagttc 16451209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 36534805 - 36534858
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagtt 175  Q
    ||||||||||| || | || ||||||||||| |||| |||||||||||||||||    
T  36534805 gaaaataagctgaaaatagattatgaacaattttataagctgttttcataagtt 36534858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 30331830 - 30331898
Alignment:
Q  164 ttttcataagttcaaccaaagattaccacaaaacttatgtcaataggtaagctcagataagtcaatcca 232  Q
    |||||||||||||  ||||| | |  |||||||||||||||| ||| |||||| | |||||||||||||    
T  30331830 ttttcataagttctcccaaacagtctcacaaaacttatgtcagtagataagctgaaataagtcaatcca 30331898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 9670 - 9617
Alignment:
Q  122 gaaaataagctaaagacagcttatgaacaatgttatcagctgttttcataagttc 176  Q
    |||||||||||||| ||||||||||||| |||| || || |||||||||||||||    
T  9670 gaaaataagctaaaaacagcttatgaac-atgtaataagttgttttcataagttc 9617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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