View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0584_low_13 (Length: 420)
Name: NF0584_low_13
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0584_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 136 - 378
Target Start/End: Complemental strand, 17577423 - 17577180
Alignment:
| Q |
136 |
aggtagatgaaagtagtgaatttctaccattggtgtatgatccagctagtattactgcatattggggaaaacgtcctcgctccgttgcaactcgcattgt |
235 |
Q |
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| T |
17577423 |
aggtagatgaaagtagtgaatttctaccattggtgtatgatccagctagtattactgcatattggggaaaacgtcctcgctccgttgcaactcgcattgt |
17577324 |
T |
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| Q |
236 |
gcagttattatctgttgctggaggttttctttcgcgggttgcgtgggatgtggttaacaagaaggttaaagaggtaatttttctatgtccagat-agact |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17577323 |
gcagttattatctgttgctggaggttttctttcgcgggttgcgtgggatgtggttaacaagaaggttaaagaggtaatttttctatgtccagataagact |
17577224 |
T |
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| Q |
335 |
aagcagcttgcgtgcattcttgacatggtggtcattgtcggtgg |
378 |
Q |
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| T |
17577223 |
aagcagcttgcgtgcattcctgacatggtggttattgtcggtgg |
17577180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17577551 - 17577483
Alignment:
| Q |
1 |
ttttcttcataaatatatgacatttccatttatgatgcttgaatattcacgagcactagcatcgagcta |
69 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17577551 |
ttttcttcataaatatatgacatttccatttatgatgcttgaatattcacgagcattagcatcgagcta |
17577483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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