View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0584_low_18 (Length: 345)
Name: NF0584_low_18
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0584_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 340
Target Start/End: Original strand, 17068292 - 17068621
Alignment:
| Q |
7 |
aagtgctctatatatagtagagggattgtgttgaaaggacaaggaaacgtgaaaatttgtggccatgcataaagtagttacgtccaagaacacgaacgta |
106 |
Q |
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| T |
17068292 |
aagtgctctatatatagtagagggattgtgttcaaaggacaaagaaacgtgaaaatttgtggccatgcataaagtagttacgtccatgaacacgaacgta |
17068391 |
T |
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| Q |
107 |
gccagaataatgaacatagccaggatgtttggcatgaagaatgatatgaaagaaatattcttattgtagcgtcacattgtagaaaattgattaaaatctt |
206 |
Q |
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| T |
17068392 |
gccagaataatgaacatagccaggttgtttggcatgaagaatgatatgaaagaaatattcttattgtagcgtctcgttgtagaaaattgattaaaatctt |
17068491 |
T |
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| Q |
207 |
tcaaaatccaacaaaggtccctcttctatttcgatcgtctaaatctttttactatcaagaatttagaaatgacaattaacttaaattctacatatgtcca |
306 |
Q |
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| T |
17068492 |
tccaaatccaacaaaggtccctcttctatt----tcgtctaaatctttttactatcaagaatttagaaatgacaattaacttaaattctacatatgtcca |
17068587 |
T |
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| Q |
307 |
agccttgacatttcctttatttgacagaataatc |
340 |
Q |
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| T |
17068588 |
agccttgacatttcctttatttgacagaataatc |
17068621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 17063110 - 17063380
Alignment:
| Q |
10 |
tgctctatatatagtagagggattgtgttgaaaggacaaggaaacgtgaaaatttgtggccatgcataaag-tagttacgtccaagaacacgaa--cgta |
106 |
Q |
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| T |
17063110 |
tgctctatatatagtagagagattgtgttcgaaggacaaagaaacttgaaaatttctggccatgcataaagatagttacgtacatgaatatgaaaacata |
17063209 |
T |
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| Q |
107 |
gccagaataatgaacatagccaggatgtttggcatgaagaat---------gatatgaaagaaatattcttattgtagcgtcacattgtagaaaattgat |
197 |
Q |
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| T |
17063210 |
gccagaataatgaacatagccaggatgtttggcaagaatactaatatttgggatatgaaagaaatattcttattgttgcatctcattgtagaaaagtgat |
17063309 |
T |
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| Q |
198 |
taaaatctttcaaaatccaacaaa-ggtccctcttctatttcgatcgtctaaatctttttactatcaagaattta |
271 |
Q |
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| T |
17063310 |
taaaatctttcaaaatccaagaaaaggtccctcctctatttct----tctaaatcttttaaatatcaaaaattta |
17063380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 17063414 - 17063453
Alignment:
| Q |
277 |
gacaattaacttaaattctacatatgtccaagccttgaca |
316 |
Q |
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| T |
17063414 |
gacaattaacataaattccacatatgtccaagccttgaca |
17063453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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