View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0584_low_21 (Length: 309)
Name: NF0584_low_21
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0584_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 36 - 280
Target Start/End: Original strand, 30370480 - 30370728
Alignment:
| Q |
36 |
gtgtgtgaagaatttggagacaagaaatacgatgatgaagaatctcaatatcttctccaagaaacctaagccaaaaggttccttctttatcattccattc |
135 |
Q |
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| T |
30370480 |
gtgtgtgaagaatttggagacaagaaatacgatgatgaagaatctcaatatcttctccaagaaacctaagccaaaaggttcattctttatcatt-cattc |
30370578 |
T |
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| Q |
136 |
gatcactcactttctcatgttttgtctttcttcttctgttctgttccttccactgtcattcaatttt-----attaaaacaaccatttttctattaacan |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30370579 |
gatcactcactttctcatgttttgtctttcttcttctgttctgttccttccaccgtcattcaattttgcttgattaaaacaaccatttttctattaacac |
30370678 |
T |
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| Q |
231 |
nnnnnntctctatccatgcagaggttctgagagagagtaaacgtgaaatg |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30370679 |
cccccctctctatccatgcagaggttctgagagagagtaaacgtgaaatg |
30370728 |
T |
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