View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0584_low_22 (Length: 296)

Name: NF0584_low_22
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0584_low_22
NF0584_low_22
[»] chr3 (1 HSPs)
chr3 (58-212)||(33805475-33805629)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 58 - 212
Target Start/End: Original strand, 33805475 - 33805629
Alignment:
Q  58 agagatcttgagttcgaattagactgagacactatcttgagttagaagtatattgatatatttgaaattttagtttacaaatggatgcacatcgaattca 157  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33805475 agagatcttaagttcgaattagactgagacactatcttgagttagaagcatattgatatatttgaaattttagtttacaaatggatgcacatcgaattca 33805574  T
Q  158 cgacagtagtttctcttgtacattgaatcagttgatgtaattagtgactaataag 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33805575 cgacagtagtttctcttgtacattgaatcagttgatgtaattagtgactaataag 33805629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University