View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0584_low_26 (Length: 276)
Name: NF0584_low_26
Description: NF0584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0584_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 51 - 240
Target Start/End: Original strand, 38419749 - 38419938
Alignment:
| Q |
51 |
aaaagaaagggaaaatccaatgtaatggaaactaattattaattggagattatttgttgttcaattttataaatctacagtgaataactgtaatttgttt |
150 |
Q |
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| T |
38419749 |
aaaagaaagggaaaatccaatgttatggaaactaattattaattggagattgtttgttgttcaattttataaatctacagtgaataactggaatttgttt |
38419848 |
T |
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| Q |
151 |
ttcttccgtctaaaatttaggaatttgacatcatcagtcctaataaaaatataatgaaatcatctttcgataataattttatctctctct |
240 |
Q |
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| T |
38419849 |
ttcttccgtctaaaatttaggaatttgacatcatcagtcctaataaaaatataatgaaatcatctttcgataataattttatctctctct |
38419938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 38436232 - 38436410
Alignment:
| Q |
51 |
aaaagaaagggaaaatccaatgtaatggaaactaattattaattggagattatttgttgttcaattttataaatctacagtgaataactgtaatttgttt |
150 |
Q |
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| T |
38436232 |
aaaagaatgggaaaatccaatattgtgaaaactagttactagttggggattttgtggtgttcaattttataaatatatcgtgaataatttgaatttgttt |
38436331 |
T |
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| Q |
151 |
ttcttccgtctaaaatttaggaatttgacatcatcagtcctaataaaaatataatgaaatcatctttcgataataatttt |
230 |
Q |
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| T |
38436332 |
ttctt-tgttttatattttggaatttgacatcttcaatccgagtaaaaatctaatgaaatcaattttccattataatttt |
38436410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 30570059 - 30570121
Alignment:
| Q |
62 |
aaaatccaatgtaatggaaactaattattaattggagattatttgttgttcaattttataaat |
124 |
Q |
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| T |
30570059 |
aaaatccaatgttatgaaaagtaattactaattagagattttgtgttgttcaattttagaaat |
30570121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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